@jbrowse/plugin-alignments 3.7.0 → 4.0.0

package/dist/shared/drawLongReadChains.d.ts

@@ -1,24 +0,0 @@
-import type { ChainData, ReducedFeature } from './fetchChains';
-import type { FlatbushEntry } from './flatbushType';
-import type { Assembly } from '@jbrowse/core/assemblyManager/assembly';
-import type { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view';
-type LGV = LinearGenomeViewModel;
-export declare function drawLongReadChains({ ctx, chainData, view, asm, chainYOffsets, renderChevrons, featureHeight, featuresForFlatbush, computedChains, flipStrandLongReadChains, }: {
-    ctx: CanvasRenderingContext2D;
-    chainData: ChainData;
-    view: LGV;
-    asm: Assembly;
-    chainYOffsets: Map<string, number>;
-    renderChevrons: boolean;
-    featureHeight: number;
-    featuresForFlatbush: FlatbushEntry[];
-    computedChains: {
-        distance: number;
-        minX: number;
-        maxX: number;
-        chain: ReducedFeature[];
-        id: string;
-    }[];
-    flipStrandLongReadChains: boolean;
-}): void;
-export {};

package/dist/shared/drawLongReadChains.js

@@ -1,104 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.drawLongReadChains = drawLongReadChains;
-const canvasUtils_1 = require("./canvasUtils");
-const chevron_1 = require("./chevron");
-const color_1 = require("./color");
-const primaryStrand_1 = require("./primaryStrand");
-const util_1 = require("./util");
-function drawLongReadChains({ ctx, chainData, view, asm, chainYOffsets, renderChevrons, featureHeight, featuresForFlatbush, computedChains, flipStrandLongReadChains, }) {
-    var _a, _b;
-    const getStrandColorKey = (strand) => strand === -1 ? 'color_rev_strand' : 'color_fwd_strand';
-    for (const computedChain of computedChains) {
-        const { id, chain, minX, maxX } = computedChain;
-        let isPairedEnd = false;
-        for (const element of chain) {
-            if (element.flags & 1) {
-                isPairedEnd = true;
-                break;
-            }
-        }
-        if (isPairedEnd) {
-            continue;
-        }
-        const chainY = chainYOffsets.get(id);
-        if (chainY === undefined) {
-            continue;
-        }
-        const nonSupplementary = [];
-        for (const element of chain) {
-            if (!(element.flags & 2048)) {
-                nonSupplementary.push(element);
-            }
-        }
-        const isSingleton = chain.length === 1;
-        const c1 = nonSupplementary[0] || chain[0];
-        const primaryStrand = (0, primaryStrand_1.getPrimaryStrandFromFlags)(c1);
-        if (!isSingleton) {
-            const firstFeat = chain[0];
-            const lastFeat = chain[chain.length - 1];
-            const firstPx = (_a = view.bpToPx({
-                refName: asm.getCanonicalRefName2(firstFeat.refName),
-                coord: firstFeat.start,
-            })) === null || _a === void 0 ? void 0 : _a.offsetPx;
-            const lastPx = (_b = view.bpToPx({
-                refName: asm.getCanonicalRefName2(lastFeat.refName),
-                coord: lastFeat.end,
-            })) === null || _b === void 0 ? void 0 : _b.offsetPx;
-            if (firstPx !== undefined && lastPx !== undefined) {
-                const lineY = chainY + featureHeight / 2 - 0.5;
-                ctx.beginPath();
-                ctx.strokeStyle = '#666';
-                ctx.moveTo(firstPx - view.offsetPx, lineY);
-                ctx.lineTo(lastPx - view.offsetPx, lineY);
-                ctx.stroke();
-            }
-        }
-        const viewOffsetPx = view.offsetPx;
-        const chainMinXPx = minX - viewOffsetPx;
-        const chainMaxXPx = maxX - viewOffsetPx;
-        for (let i = 0, l = chain.length; i < l; i++) {
-            const feat = chain[i];
-            const s = view.bpToPx({
-                refName: asm.getCanonicalRefName2(feat.refName),
-                coord: feat.start,
-            });
-            const e = view.bpToPx({
-                refName: asm.getCanonicalRefName2(feat.refName),
-                coord: feat.end,
-            });
-            if (!s || !e) {
-                continue;
-            }
-            const effectiveStrand = isSingleton || !flipStrandLongReadChains
-                ? feat.strand
-                : feat.strand * primaryStrand;
-            const [featureFill, featureStroke] = isSingleton
-                ? (0, color_1.getSingletonColor)(feat, chainData.stats)
-                : [
-                    color_1.fillColor[getStrandColorKey(effectiveStrand)],
-                    color_1.strokeColor[getStrandColorKey(effectiveStrand)],
-                ];
-            const xPos = s.offsetPx - viewOffsetPx;
-            const width = Math.max(e.offsetPx - s.offsetPx, 3);
-            if (renderChevrons) {
-                (0, chevron_1.drawChevron)(ctx, xPos, chainY, width, featureHeight, effectiveStrand, featureFill, util_1.CHEVRON_WIDTH, featureStroke);
-            }
-            else {
-                (0, canvasUtils_1.fillRectCtx)(xPos, chainY, width, featureHeight, ctx, featureFill);
-                (0, canvasUtils_1.strokeRectCtx)(xPos, chainY, width, featureHeight, ctx, featureStroke);
-            }
-            featuresForFlatbush.push({
-                x1: xPos,
-                y1: chainY,
-                x2: xPos + width,
-                y2: chainY + featureHeight,
-                data: feat,
-                chainId: id,
-                chainMinX: chainMinXPx,
-                chainMaxX: chainMaxXPx,
-                chain,
-            });
-        }
-    }
-}

package/dist/shared/drawPairChains.d.ts

@@ -1,24 +0,0 @@
-import type { ChainData, ReducedFeature } from './fetchChains';
-import type { FlatbushEntry } from './flatbushType';
-import type { Assembly } from '@jbrowse/core/assemblyManager/assembly';
-import type { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view';
-type LGV = LinearGenomeViewModel;
-export declare function drawPairChains({ ctx, type, chainData, view, asm, chainYOffsets, renderChevrons, featureHeight, featuresForFlatbush, computedChains, }: {
-    ctx: CanvasRenderingContext2D;
-    type: string;
-    chainData: ChainData;
-    view: LGV;
-    asm: Assembly;
-    chainYOffsets: Map<string, number>;
-    renderChevrons: boolean;
-    featureHeight: number;
-    featuresForFlatbush: FlatbushEntry[];
-    computedChains: {
-        distance: number;
-        minX: number;
-        maxX: number;
-        chain: ReducedFeature[];
-        id: string;
-    }[];
-}): void;
-export {};

package/dist/shared/drawPairChains.js

@@ -1,94 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.drawPairChains = drawPairChains;
-const canvasUtils_1 = require("./canvasUtils");
-const chevron_1 = require("./chevron");
-const color_1 = require("./color");
-const util_1 = require("./util");
-function drawPairChains({ ctx, type, chainData, view, asm, chainYOffsets, renderChevrons, featureHeight, featuresForFlatbush, computedChains, }) {
-    var _a, _b;
-    for (const computedChain of computedChains) {
-        const { id, chain, minX, maxX } = computedChain;
-        let isPairedEnd = false;
-        for (const element of chain) {
-            if (element.flags & 1) {
-                isPairedEnd = true;
-                break;
-            }
-        }
-        if (!isPairedEnd) {
-            continue;
-        }
-        const chainY = chainYOffsets.get(id);
-        if (chainY === undefined) {
-            continue;
-        }
-        const nonSupplementary = [];
-        for (const element of chain) {
-            if (!(element.flags & 2048)) {
-                nonSupplementary.push(element);
-            }
-        }
-        const hasBothMates = nonSupplementary.length === 2;
-        const [pairedFill, pairedStroke] = hasBothMates
-            ? (0, color_1.getPairedColor)({
-                type,
-                v0: nonSupplementary[0],
-                v1: nonSupplementary[1],
-                stats: chainData.stats,
-            }) || ['#888', '#888']
-            : (0, color_1.getSingletonColor)(nonSupplementary[0] || chain[0], chainData.stats);
-        if (hasBothMates) {
-            const v0 = nonSupplementary[0];
-            const v1 = nonSupplementary[1];
-            const r1s = (_a = view.bpToPx({
-                refName: asm.getCanonicalRefName2(v0.refName),
-                coord: v0.start,
-            })) === null || _a === void 0 ? void 0 : _a.offsetPx;
-            const r2s = (_b = view.bpToPx({
-                refName: asm.getCanonicalRefName2(v1.refName),
-                coord: v1.start,
-            })) === null || _b === void 0 ? void 0 : _b.offsetPx;
-            if (r1s !== undefined && r2s !== undefined) {
-                (0, canvasUtils_1.fillRectCtx)(r1s - view.offsetPx, chainY + featureHeight / 2 - 0.5, r2s - r1s, 1, ctx, '#666');
-            }
-        }
-        const viewOffsetPx = view.offsetPx;
-        const chainMinXPx = minX - viewOffsetPx;
-        const chainMaxXPx = maxX - viewOffsetPx;
-        for (let i = 0, l = chain.length; i < l; i++) {
-            const feat = chain[i];
-            const s = view.bpToPx({
-                refName: asm.getCanonicalRefName2(feat.refName),
-                coord: feat.start,
-            });
-            const e = view.bpToPx({
-                refName: asm.getCanonicalRefName2(feat.refName),
-                coord: feat.end,
-            });
-            if (!s || !e) {
-                continue;
-            }
-            const xPos = s.offsetPx - viewOffsetPx;
-            const width = Math.max(e.offsetPx - s.offsetPx, 3);
-            if (renderChevrons) {
-                (0, chevron_1.drawChevron)(ctx, xPos, chainY, width, featureHeight, feat.strand, pairedFill, util_1.CHEVRON_WIDTH, pairedStroke);
-            }
-            else {
-                (0, canvasUtils_1.fillRectCtx)(xPos, chainY, width, featureHeight, ctx, pairedFill);
-                (0, canvasUtils_1.strokeRectCtx)(xPos, chainY, width, featureHeight, ctx, pairedStroke);
-            }
-            featuresForFlatbush.push({
-                x1: xPos,
-                y1: chainY,
-                x2: xPos + width,
-                y2: chainY + featureHeight,
-                data: feat,
-                chainId: id,
-                chainMinX: chainMinXPx,
-                chainMaxX: chainMaxXPx,
-                chain,
-            });
-        }
-    }
-}

package/dist/shared/fetchChains.d.ts

@@ -1,28 +0,0 @@
-import type { LinearReadArcsDisplayModel } from '../LinearReadArcsDisplay/model';
-import type { LinearReadCloudDisplayModel } from '../LinearReadCloudDisplay/model';
-export interface ReducedFeature {
-    name: string;
-    strand: number;
-    refName: string;
-    start: number;
-    end: number;
-    id: string;
-    flags: number;
-    tlen: number;
-    pair_orientation: string;
-    next_ref?: string;
-    next_pos?: number;
-    clipPos: number;
-    SA?: string;
-}
-export interface ChainStats {
-    max: number;
-    min: number;
-    upper: number;
-    lower: number;
-}
-export interface ChainData {
-    chains: ReducedFeature[][];
-    stats?: ChainStats;
-}
-export declare function fetchChains(self: LinearReadArcsDisplayModel | LinearReadCloudDisplayModel): Promise<void>;

package/dist/shared/fetchChains.js

@@ -1,22 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.fetchChains = fetchChains;
-const util_1 = require("@jbrowse/core/util");
-const tracks_1 = require("@jbrowse/core/util/tracks");
-async function fetchChains(self) {
-    const sessionId = (0, tracks_1.getRpcSessionId)(self);
-    const { rpcManager } = (0, util_1.getSession)(self);
-    const view = (0, util_1.getContainingView)(self);
-    if (!view.initialized || self.error || !self.statsReadyAndRegionNotTooLarge) {
-        return;
-    }
-    self.setLoading(true);
-    const ret = (await rpcManager.call(sessionId, 'PileupGetReducedFeatures', {
-        sessionId,
-        regions: view.staticBlocks.contentBlocks,
-        filterBy: self.filterBy,
-        adapterConfig: self.adapterConfig,
-    }));
-    self.setChainData(ret);
-    self.setLoading(false);
-}

package/dist/shared/flatbushType.d.ts

@@ -1,12 +0,0 @@
-import type { ReducedFeature } from './fetchChains';
-export interface FlatbushEntry {
-    x1: number;
-    y1: number;
-    x2: number;
-    y2: number;
-    data: ReducedFeature;
-    chainId: string;
-    chainMinX: number;
-    chainMaxX: number;
-    chain: ReducedFeature[];
-}

package/dist/shared/flatbushType.js

@@ -1,2 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });

package/dist/shared/getMaximumModificationAtEachPosition.d.ts

@@ -1,8 +0,0 @@
-import type { Feature } from '@jbrowse/core/util';
-interface MaximumProbabilityMod {
-    type: string;
-    prob: number;
-    allProbs: number[];
-}
-export declare function getMaxProbModAtEachPosition(feature: Feature, cigarOps?: string[]): MaximumProbabilityMod[] | undefined;
-export {};

package/dist/shared/getMaximumModificationAtEachPosition.js

@@ -1,42 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.getMaxProbModAtEachPosition = getMaxProbModAtEachPosition;
-const MismatchParser_1 = require("../MismatchParser");
-const getModPositions_1 = require("../ModificationParser/getModPositions");
-const getModProbabilities_1 = require("../ModificationParser/getModProbabilities");
-const util_1 = require("../util");
-function getMaxProbModAtEachPosition(feature, cigarOps) {
-    const fstrand = feature.get('strand');
-    const seq = feature.get('seq');
-    const mm = (0, util_1.getTagAlt)(feature, 'MM', 'Mm') || '';
-    const ops = cigarOps || (0, MismatchParser_1.parseCigar)(feature.get('CIGAR'));
-    if (seq) {
-        const modifications = (0, getModPositions_1.getModPositions)(mm, seq, fstrand);
-        const probabilities = (0, getModProbabilities_1.getModProbabilities)(feature);
-        const maxProbModForPosition = [];
-        let probIndex = 0;
-        for (const { type, positions } of modifications) {
-            for (const { ref, idx } of (0, MismatchParser_1.getNextRefPos)(ops, positions)) {
-                const prob = (probabilities === null || probabilities === void 0 ? void 0 : probabilities[probIndex + (fstrand === -1 ? positions.length - 1 - idx : idx)]) || 0;
-                if (!maxProbModForPosition[ref]) {
-                    maxProbModForPosition[ref] = {
-                        type,
-                        prob,
-                        allProbs: [prob],
-                    };
-                }
-                else {
-                    const old = maxProbModForPosition[ref];
-                    maxProbModForPosition[ref] = {
-                        allProbs: [...old.allProbs, prob],
-                        prob: Math.max(old.prob, prob),
-                        type: old.prob > prob ? old.type : type,
-                    };
-                }
-            }
-            probIndex += positions.length;
-        }
-        return maxProbModForPosition;
-    }
-    return undefined;
-}

package/dist/shared/getUniqueModifications.d.ts

@@ -1,18 +0,0 @@
-import { type IAnyStateTreeNode } from 'mobx-state-tree';
-import type { ModificationType } from './types';
-import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
-import type { BlockSet } from '@jbrowse/core/util/blockTypes';
-export interface ModificationOpts {
-    headers?: Record<string, string>;
-    stopToken?: string;
-    filters: string[];
-}
-export declare function getUniqueModifications({ model, adapterConfig, blocks, opts, }: {
-    model: IAnyStateTreeNode;
-    adapterConfig: AnyConfigurationModel;
-    blocks: BlockSet;
-    opts?: ModificationOpts;
-}): Promise<{
-    modifications: ModificationType[];
-    simplexModifications: string[];
-}>;

package/dist/shared/getUniqueModifications.js

@@ -1,22 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.getUniqueModifications = getUniqueModifications;
-const util_1 = require("@jbrowse/core/util");
-const tracks_1 = require("@jbrowse/core/util/tracks");
-const mobx_state_tree_1 = require("mobx-state-tree");
-async function getUniqueModifications({ model, adapterConfig, blocks, opts, }) {
-    const { rpcManager } = (0, util_1.getSession)(model);
-    const sessionId = (0, tracks_1.getRpcSessionId)(model);
-    const values = await rpcManager.call(sessionId, 'PileupGetVisibleModifications', {
-        adapterConfig,
-        sessionId,
-        regions: blocks.contentBlocks,
-        statusCallback: (arg) => {
-            if ((0, mobx_state_tree_1.isAlive)(model)) {
-                model.setMessage(arg);
-            }
-        },
-        ...opts,
-    });
-    return values;
-}

package/dist/shared/getUniqueTags.d.ts

@@ -1,15 +0,0 @@
-import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
-import type { BlockSet } from '@jbrowse/core/util/blockTypes';
-import type { IAnyStateTreeNode } from 'mobx-state-tree';
-export declare function getUniqueTags({ self, tag, blocks, opts, }: {
-    self: IAnyStateTreeNode & {
-        adapterConfig: AnyConfigurationModel;
-    };
-    tag: string;
-    blocks: BlockSet;
-    opts?: {
-        headers?: Record<string, string>;
-        stopToken?: string;
-        filters: string[];
-    };
-}): Promise<string[]>;

package/dist/shared/getUniqueTags.js

@@ -1,18 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.getUniqueTags = getUniqueTags;
-const util_1 = require("@jbrowse/core/util");
-const tracks_1 = require("@jbrowse/core/util/tracks");
-async function getUniqueTags({ self, tag, blocks, opts, }) {
-    const { rpcManager } = (0, util_1.getSession)(self);
-    const { adapterConfig } = self;
-    const sessionId = (0, tracks_1.getRpcSessionId)(self);
-    const values = await rpcManager.call((0, tracks_1.getRpcSessionId)(self), 'PileupGetGlobalValueForTag', {
-        adapterConfig,
-        tag,
-        sessionId,
-        regions: blocks.contentBlocks,
-        ...opts,
-    });
-    return values;
-}

package/dist/shared/menuItems.d.ts

@@ -1,23 +0,0 @@
-interface LinearReadDisplayModel {
-    setColorScheme: (colorBy: {
-        type: string;
-    }) => void;
-}
-export declare function getColorSchemeMenuItem(model: LinearReadDisplayModel): {
-    label: string;
-    icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
-        muiName: string;
-    };
-    subMenu: {
-        label: string;
-        onClick: () => void;
-    }[];
-};
-export declare function getFilterByMenuItem(model: unknown): {
-    label: string;
-    icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
-        muiName: string;
-    };
-    onClick: () => void;
-};
-export {};

package/dist/shared/menuItems.js

@@ -1,89 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.getColorSchemeMenuItem = getColorSchemeMenuItem;
-exports.getFilterByMenuItem = getFilterByMenuItem;
-const react_1 = require("react");
-const util_1 = require("@jbrowse/core/util");
-const ClearAll_1 = __importDefault(require("@mui/icons-material/ClearAll"));
-const Palette_1 = __importDefault(require("@mui/icons-material/Palette"));
-const FilterByTagDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/FilterByTagDialog'))));
-function getColorSchemeMenuItem(model) {
-    return {
-        label: 'Color scheme',
-        icon: Palette_1.default,
-        subMenu: [
-            {
-                label: 'Insert size ± 3σ and orientation',
-                onClick: () => {
-                    model.setColorScheme({ type: 'insertSizeAndOrientation' });
-                },
-            },
-            {
-                label: 'Insert size ± 3σ',
-                onClick: () => {
-                    model.setColorScheme({ type: 'insertSize' });
-                },
-            },
-            {
-                label: 'Orientation',
-                onClick: () => {
-                    model.setColorScheme({ type: 'orientation' });
-                },
-            },
-            {
-                label: 'Insert size gradient',
-                onClick: () => {
-                    model.setColorScheme({ type: 'gradient' });
-                },
-            },
-        ],
-    };
-}
-function getFilterByMenuItem(model) {
-    return {
-        label: 'Filter by',
-        icon: ClearAll_1.default,
-        onClick: () => {
-            (0, util_1.getSession)(model).queueDialog((handleClose) => [
-                FilterByTagDialog,
-                { model, handleClose },
-            ]);
-        },
-    };
-}

package/dist/shared/modificationData.d.ts

@@ -1,6 +0,0 @@
-export interface ModificationData {
-    color: string;
-    name: string;
-}
-export declare const modificationData: Record<string, ModificationData>;
-export declare function getModificationName(type: string): string;

package/dist/shared/modificationData.js

@@ -1,22 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.modificationData = void 0;
-exports.getModificationName = getModificationName;
-exports.modificationData = {
-    m: { color: 'rgb(255,0,0)', name: '5mC' },
-    h: { color: 'rgb(255,0,255)', name: '5hmC' },
-    o: { color: 'rgb(111, 78, 129)', name: '8oxoG' },
-    f: { color: 'rgb(246, 200, 95)', name: '5fC' },
-    c: { color: 'rgb(157, 216, 102)', name: '5cac' },
-    g: { color: 'rgb(255, 160, 86)', name: '5hmu' },
-    e: { color: 'rgb(141, 221, 208)', name: '5fU' },
-    b: { color: 'rgb(0,100,47)', name: '5caU' },
-    a: { color: 'rgb(51,0,111)', name: '6mA' },
-    17082: { color: 'rgb(51,153,255)', name: 'pseU' },
-    17596: { color: 'rgb(102,153,0)', name: 'inosine' },
-    21839: { color: 'rgb(153,0,153)', name: '4mC' },
-};
-function getModificationName(type) {
-    var _a;
-    return ((_a = exports.modificationData[type]) === null || _a === void 0 ? void 0 : _a.name) || type;
-}

package/dist/shared/primaryStrand.d.ts

@@ -1,3 +0,0 @@
-import type { ReducedFeature } from './fetchChains';
-export declare function getPrimaryStrand(feat: ReducedFeature): number;
-export declare function getPrimaryStrandFromFlags(feat: ReducedFeature): 1 | -1;

package/dist/shared/primaryStrand.js

@@ -1,24 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.getPrimaryStrand = getPrimaryStrand;
-exports.getPrimaryStrandFromFlags = getPrimaryStrandFromFlags;
-function getPrimaryStrand(feat) {
-    var _a, _b;
-    if (!(feat.flags & 2048)) {
-        return feat.strand;
-    }
-    else {
-        const res = (_b = (_a = feat.SA) === null || _a === void 0 ? void 0 : _a.split(';')[0]) === null || _b === void 0 ? void 0 : _b.split(',')[2];
-        return res === '-' ? -1 : 1;
-    }
-}
-function getPrimaryStrandFromFlags(feat) {
-    var _a, _b;
-    if (!(feat.flags & 2048)) {
-        return feat.flags & 16 ? -1 : 1;
-    }
-    else {
-        const res = (_b = (_a = feat.SA) === null || _a === void 0 ? void 0 : _a.split(';')[0]) === null || _b === void 0 ? void 0 : _b.split(',')[2];
-        return res === '-' ? -1 : 1;
-    }
-}

package/dist/shared/renderSvgUtil.d.ts

@@ -1,6 +0,0 @@
-export declare function renderSvg<T extends {
-    id: string;
-    height: number;
-}>(self: T, opts: {
-    rasterizeLayers?: boolean;
-}, cb: (model: T, ctx: CanvasRenderingContext2D, width: number, height: number) => void): Promise<import("react/jsx-runtime").JSX.Element | undefined>;