@jbrowse/plugin-alignments 3.6.5 → 4.0.0

package/dist/LinearPileupDisplay/components/GroupByDialog.js

@@ -1,145 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const ui_1 = require("@jbrowse/core/ui");
-const util_1 = require("@jbrowse/core/util");
-const material_1 = require("@mui/material");
-const mobx_react_1 = require("mobx-react");
-const mobx_state_tree_1 = require("mobx-state-tree");
-const getUniqueTags_1 = require("../../shared/getUniqueTags");
-const util_2 = require("../../shared/util");
-const GroupByTagDialog = (0, mobx_react_1.observer)(function (props) {
-    const { model, handleClose } = props;
-    const [tag, setGroupByTag] = (0, react_1.useState)('');
-    const [tagSet, setGroupByTagSet] = (0, react_1.useState)();
-    const [loading, setLoading] = (0, react_1.useState)(false);
-    const [error, setError] = (0, react_1.useState)();
-    const validTag = /^[A-Za-z][A-Za-z0-9]$/.exec(tag);
-    const isInvalid = tag.length === 2 && !validTag;
-    const debouncedTag = (0, util_1.useDebounce)(tag, 1000);
-    const [type, setType] = (0, react_1.useState)('');
-    (0, react_1.useEffect)(() => {
-        ;
-        (async () => {
-            try {
-                if (!isInvalid) {
-                    setError(undefined);
-                    setLoading(true);
-                    const vals = await (0, getUniqueTags_1.getUniqueTags)({
-                        self: model,
-                        tag: debouncedTag,
-                        blocks: (0, util_1.getContainingView)(model)
-                            .staticBlocks,
-                    });
-                    setGroupByTagSet(vals);
-                }
-            }
-            catch (e) {
-                console.error(e);
-                setError(e);
-            }
-            finally {
-                setLoading(false);
-            }
-        })();
-    }, [model, isInvalid, debouncedTag]);
-    return ((0, jsx_runtime_1.jsxs)(ui_1.Dialog, { open: true, onClose: handleClose, title: "Group by", children: [(0, jsx_runtime_1.jsxs)(material_1.DialogContent, { children: [(0, jsx_runtime_1.jsx)(material_1.Typography, { children: "NOTE: this will create new session tracks with the \"filter by\" set to the values chosen here rather than affecting the current track state" }), (0, jsx_runtime_1.jsxs)(material_1.TextField, { fullWidth: true, value: type, onChange: event => {
-                            setType(event.target.value);
-                        }, label: "Group by...", select: true, children: [(0, jsx_runtime_1.jsx)(material_1.MenuItem, { value: "strand", children: "Strand" }), (0, jsx_runtime_1.jsx)(material_1.MenuItem, { value: "tag", children: "Tag" })] }), type === 'tag' ? ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(material_1.Typography, { color: "textSecondary", children: "Examples: HP for haplotype, RG for read group, etc." }), (0, jsx_runtime_1.jsx)(material_1.TextField, { value: tag, onChange: event => {
-                                    setGroupByTag(event.target.value);
-                                }, placeholder: "Enter tag name", error: isInvalid, helperText: isInvalid ? 'Not a valid tag' : '', autoComplete: "off", "data-testid": "group-tag-name", slotProps: {
-                                    htmlInput: {
-                                        maxLength: 2,
-                                        'data-testid': 'group-tag-name-input',
-                                    },
-                                } }), error ? ((0, jsx_runtime_1.jsx)(ui_1.ErrorMessage, { error: error })) : loading ? ((0, jsx_runtime_1.jsx)(ui_1.LoadingEllipses, { title: "Loading unique tags" })) : tagSet ? ((0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsxs)("div", { children: ["Found unique ", tag, " values:"] }), (0, jsx_runtime_1.jsx)("div", { children: tagSet.join(', ') })] })) : null] })) : null] }), (0, jsx_runtime_1.jsxs)(material_1.DialogActions, { children: [(0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "primary", type: "submit", disabled: !tagSet, autoFocus: true, onClick: () => {
-                            const track = (0, util_1.getContainingTrack)(model);
-                            const trackConf = structuredClone((0, mobx_state_tree_1.getSnapshot)(track.configuration));
-                            const session = (0, util_1.getSession)(model);
-                            const view = (0, util_1.getContainingView)(model);
-                            if (type === 'tag') {
-                                if (tagSet) {
-                                    const ret = [...tagSet, undefined];
-                                    for (const tagValue of ret) {
-                                        const t1 = `${trackConf.trackId}-${tag}:${tagValue}-${+Date.now()}-sessionTrack`;
-                                        session.addTrackConf({
-                                            ...trackConf,
-                                            trackId: t1,
-                                            name: `${trackConf.name} (${tag}:${tagValue})`,
-                                            displays: [
-                                                {
-                                                    displayId: `${t1}-LinearAlignmentsDisplay`,
-                                                    type: 'LinearAlignmentsDisplay',
-                                                    pileupDisplay: {
-                                                        displayId: `${t1}-LinearAlignmentsDisplay-LinearPileupDisplay`,
-                                                        type: 'LinearPileupDisplay',
-                                                        filterBy: {
-                                                            ...util_2.defaultFilterFlags,
-                                                            tagFilter: {
-                                                                tag,
-                                                                value: tagValue,
-                                                            },
-                                                        },
-                                                    },
-                                                },
-                                            ],
-                                        });
-                                        view.showTrack(t1);
-                                    }
-                                }
-                            }
-                            else if (type === 'strand') {
-                                const t1 = `${trackConf.trackId}-${tag}:(-)-${+Date.now()}-sessionTrack`;
-                                const t2 = `${trackConf.trackId}-${tag}:(+)-${+Date.now()}-sessionTrack`;
-                                session.addTrackConf({
-                                    ...trackConf,
-                                    trackId: t1,
-                                    name: `${trackConf.name} (-)`,
-                                    displays: [
-                                        {
-                                            displayId: `${t1}-LinearAlignmentsDisplay`,
-                                            type: 'LinearAlignmentsDisplay',
-                                            pileupDisplay: {
-                                                displayId: `${t1}-LinearAlignmentsDisplay-LinearPileupDisplay`,
-                                                type: 'LinearPileupDisplay',
-                                                filterBy: util_2.negFlags,
-                                            },
-                                        },
-                                        {
-                                            displayId: `${t1}-LinearSNPCoverageDisplay`,
-                                            type: 'LinearSNPCoverageDisplay',
-                                            filterBy: util_2.negFlags,
-                                        },
-                                    ],
-                                });
-                                session.addTrackConf({
-                                    ...trackConf,
-                                    trackId: t2,
-                                    name: `${trackConf.name} (+)`,
-                                    displays: [
-                                        {
-                                            displayId: `${t2}-LinearAlignmentsDisplay`,
-                                            type: 'LinearAlignmentsDisplay',
-                                            pileupDisplay: {
-                                                displayId: `${t2}-LinearAlignmentsDisplay-LinearPileupDisplay`,
-                                                type: 'LinearPileupDisplay',
-                                                filterBy: util_2.posFlags,
-                                            },
-                                        },
-                                        {
-                                            displayId: `${t2}-LinearSNPCoverageDisplay`,
-                                            type: 'LinearSNPCoverageDisplay',
-                                            filterBy: util_2.posFlags,
-                                        },
-                                    ],
-                                });
-                                view.showTrack(t1);
-                                view.showTrack(t2);
-                            }
-                            handleClose();
-                        }, children: "Submit" }), (0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "secondary", onClick: () => {
-                            handleClose();
-                        }, children: "Cancel" })] })] }));
-});
-exports.default = GroupByTagDialog;

package/dist/LinearPileupDisplay/components/LinearPileupDisplayBlurb.d.ts

@@ -1,7 +0,0 @@
-import type { SortedBy } from '../../shared/types';
-declare const LinearPileupDisplayBlurb: ({ model, }: {
-    model: {
-        sortedBy?: SortedBy;
-    };
-}) => import("react/jsx-runtime").JSX.Element | null;
-export default LinearPileupDisplayBlurb;

package/dist/LinearPileupDisplay/components/LinearPileupDisplayBlurb.js

@@ -1,11 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const material_1 = require("@mui/material");
-const mobx_react_1 = require("mobx-react");
-const LinearPileupDisplayBlurb = (0, mobx_react_1.observer)(function ({ model, }) {
-    var _a;
-    const { sortedBy } = model;
-    return sortedBy ? ((0, jsx_runtime_1.jsx)("div", { "data-testid": `blurb-${sortedBy}`, children: (0, jsx_runtime_1.jsx)(material_1.Typography, { color: "secondary", variant: "caption", children: `Sorted by ${(_a = sortedBy.tag) !== null && _a !== void 0 ? _a : sortedBy.type} at ${sortedBy.refName}:${sortedBy.pos}` }) })) : null;
-});
-exports.default = LinearPileupDisplayBlurb;

package/dist/LinearPileupDisplay/components/SetFeatureHeightDialog.js

@@ -1,26 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const ui_1 = require("@jbrowse/core/ui");
-const material_1 = require("@mui/material");
-const mobx_react_1 = require("mobx-react");
-const SetFeatureHeightDialog = (0, mobx_react_1.observer)(function (props) {
-    const { model, handleClose } = props;
-    const { featureHeightSetting, noSpacing: noSpacingSetting } = model;
-    const [height, setHeight] = (0, react_1.useState)(`${featureHeightSetting}`);
-    const [noSpacing, setNoSpacing] = (0, react_1.useState)(noSpacingSetting);
-    const ok = height !== '' && !Number.isNaN(+height);
-    return ((0, jsx_runtime_1.jsx)(ui_1.Dialog, { open: true, onClose: handleClose, title: "Set feature height", children: (0, jsx_runtime_1.jsxs)(material_1.DialogContent, { children: [(0, jsx_runtime_1.jsx)(material_1.Typography, { children: "Adjust the feature height and whether there is any spacing between features. Setting feature height to 1 and removing spacing makes the display very compact." }), (0, jsx_runtime_1.jsx)(material_1.TextField, { value: height, helperText: "Feature height", onChange: event => {
-                        setHeight(event.target.value);
-                    } }), (0, jsx_runtime_1.jsx)(material_1.FormControlLabel, { control: (0, jsx_runtime_1.jsx)(material_1.Checkbox, { checked: !!noSpacing, onChange: () => {
-                            setNoSpacing(val => !val);
-                        } }), label: "Remove spacing between features in y-direction?" }), (0, jsx_runtime_1.jsxs)(material_1.DialogActions, { children: [(0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "primary", type: "submit", autoFocus: true, disabled: !ok, onClick: () => {
-                                model.setFeatureHeight(height !== '' && !Number.isNaN(+height) ? +height : undefined);
-                                model.setNoSpacing(noSpacing);
-                                handleClose();
-                            }, children: "Submit" }), (0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "secondary", onClick: () => {
-                                handleClose();
-                            }, children: "Cancel" })] })] }) }));
-});
-exports.default = SetFeatureHeightDialog;

package/dist/LinearPileupDisplay/components/SetMaxHeightDialog.js

@@ -1,28 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const ui_1 = require("@jbrowse/core/ui");
-const material_1 = require("@mui/material");
-const mobx_react_1 = require("mobx-react");
-const mui_1 = require("tss-react/mui");
-const useStyles = (0, mui_1.makeStyles)()({
-    root: {
-        width: 500,
-    },
-});
-const SetMaxHeightDialog = (0, mobx_react_1.observer)(function (props) {
-    const { model, handleClose } = props;
-    const { classes } = useStyles();
-    const { maxHeight = '' } = model;
-    const [max, setMax] = (0, react_1.useState)(`${maxHeight}`);
-    return ((0, jsx_runtime_1.jsx)(ui_1.Dialog, { open: true, onClose: handleClose, title: "Set max height", children: (0, jsx_runtime_1.jsxs)(material_1.DialogContent, { className: classes.root, children: [(0, jsx_runtime_1.jsx)(material_1.Typography, { children: "Set max height for the track. For example, you can increase this if the layout says \"Max height reached\"" }), (0, jsx_runtime_1.jsx)(material_1.TextField, { value: max, autoFocus: true, onChange: event => {
-                        setMax(event.target.value);
-                    }, placeholder: "Enter max height for layout" }), (0, jsx_runtime_1.jsxs)(material_1.DialogActions, { children: [(0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "primary", type: "submit", autoFocus: true, onClick: () => {
-                                model.setMaxHeight(max !== '' && !Number.isNaN(+max) ? +max : undefined);
-                                handleClose();
-                            }, children: "Submit" }), (0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "secondary", onClick: () => {
-                                handleClose();
-                            }, children: "Cancel" })] })] }) }));
-});
-exports.default = SetMaxHeightDialog;

package/dist/LinearPileupDisplay/components/SortByTagDialog.d.ts

@@ -1,7 +0,0 @@
-declare const SortByTagDialog: (props: {
-    model: {
-        setSortedBy: (arg: string, arg2: string) => void;
-    };
-    handleClose: () => void;
-}) => import("react/jsx-runtime").JSX.Element;
-export default SortByTagDialog;

package/dist/LinearPileupDisplay/components/SortByTagDialog.js

@@ -1,26 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const ui_1 = require("@jbrowse/core/ui");
-const material_1 = require("@mui/material");
-const mobx_react_1 = require("mobx-react");
-const SortByTagDialog = (0, mobx_react_1.observer)(function (props) {
-    const { model, handleClose } = props;
-    const [tag, setTag] = (0, react_1.useState)('');
-    const validTag = /^[A-Za-z][A-Za-z0-9]$/.exec(tag);
-    return ((0, jsx_runtime_1.jsx)(ui_1.Dialog, { open: true, onClose: handleClose, title: "Sort by tag", children: (0, jsx_runtime_1.jsxs)(material_1.DialogContent, { children: [(0, jsx_runtime_1.jsx)(material_1.Typography, { children: "Set the tag to sort by" }), (0, jsx_runtime_1.jsx)(material_1.Typography, { color: "textSecondary", children: "Examples: HP for haplotype, RG for read group, etc." }), (0, jsx_runtime_1.jsx)(material_1.TextField, { value: tag, onChange: event => {
-                        setTag(event.target.value);
-                    }, placeholder: "Enter tag name", error: tag.length === 2 && !validTag, helperText: tag.length === 2 && !validTag ? 'Not a valid tag' : '', autoComplete: "off", "data-testid": "sort-tag-name", slotProps: {
-                        htmlInput: {
-                            maxLength: 2,
-                            'data-testid': 'sort-tag-name-input',
-                        },
-                    } }), (0, jsx_runtime_1.jsxs)(material_1.DialogActions, { children: [(0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "primary", type: "submit", autoFocus: true, onClick: () => {
-                                model.setSortedBy('tag', tag);
-                                handleClose();
-                            }, children: "Submit" }), (0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "secondary", onClick: () => {
-                                handleClose();
-                            }, children: "Cancel" })] })] }) }));
-});
-exports.default = SortByTagDialog;

package/dist/LinearPileupDisplay/configSchema.d.ts

@@ -1,61 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-declare function configSchemaF(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    defaultRendering: {
-        type: string;
-        model: import("mobx-state-tree").ISimpleType<string>;
-        defaultValue: string;
-    };
-    renderers: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-        PileupRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
-    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-    maxFeatureScreenDensity: {
-        type: string;
-        description: string;
-        defaultValue: number;
-    };
-    colorBy: {
-        type: string;
-        description: string;
-        defaultValue: {
-            type: string;
-        };
-    };
-    filterBy: {
-        type: string;
-        description: string;
-        defaultValue: {
-            flagInclude: number;
-            flagExclude: number;
-        };
-    };
-}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    renderer: import("mobx-state-tree").IAnyModelType;
-}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    maxFeatureScreenDensity: {
-        type: string;
-        description: string;
-        defaultValue: number;
-    };
-    fetchSizeLimit: {
-        type: string;
-        defaultValue: number;
-        description: string;
-    };
-    height: {
-        type: string;
-        defaultValue: number;
-        description: string;
-    };
-    mouseover: {
-        type: string;
-        description: string;
-        defaultValue: string;
-        contextVariable: string[];
-    };
-    jexlFilters: {
-        type: string;
-        description: string;
-        defaultValue: never[];
-    };
-}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>, undefined>>;
-export default configSchemaF;

package/dist/LinearPileupDisplay/configSchema.js

@@ -1,40 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const configuration_1 = require("@jbrowse/core/configuration");
-const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
-const mobx_state_tree_1 = require("mobx-state-tree");
-const util_1 = require("../shared/util");
-function x() { }
-function configSchemaF(pluginManager) {
-    return (0, configuration_1.ConfigurationSchema)('LinearPileupDisplay', {
-        defaultRendering: {
-            type: 'stringEnum',
-            model: mobx_state_tree_1.types.enumeration('Rendering', ['pileup']),
-            defaultValue: 'pileup',
-        },
-        renderers: (0, configuration_1.ConfigurationSchema)('RenderersConfiguration', {
-            PileupRenderer: pluginManager.getRendererType('PileupRenderer').configSchema,
-        }),
-        maxFeatureScreenDensity: {
-            type: 'number',
-            description: 'maximum features per pixel that is displayed in the view',
-            defaultValue: 5,
-        },
-        colorBy: {
-            type: 'frozen',
-            description: 'color scheme to use',
-            defaultValue: {
-                type: 'normal',
-            },
-        },
-        filterBy: {
-            type: 'frozen',
-            description: 'default filters to use',
-            defaultValue: util_1.defaultFilterFlags,
-        },
-    }, {
-        baseConfiguration: (0, plugin_linear_genome_view_1.linearBasicDisplayConfigSchemaFactory)(pluginManager),
-        explicitlyTyped: true,
-    });
-}
-exports.default = configSchemaF;

package/dist/LinearPileupDisplay/doAfterAttach.d.ts

@@ -1,20 +0,0 @@
-import type { ModificationType, SortedBy } from '../shared/types';
-import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
-export declare function doAfterAttach(model: {
-    autorunReady: boolean;
-    sortedBy?: SortedBy;
-    adapterConfig: AnyConfigurationModel;
-    rendererType: {
-        name: string;
-    };
-    sortReady: boolean;
-    currSortBpPerPx: number;
-    parentTrack: any;
-    renderPropsPre: () => Record<string, unknown>;
-    setCurrSortBpPerPx: (arg: number) => void;
-    setError: (arg: unknown) => void;
-    updateVisibleModifications: (arg: ModificationType[]) => void;
-    setModificationsReady: (arg: boolean) => void;
-    setSortReady: (arg: boolean) => void;
-    setMessage: (arg: string) => void;
-}): void;

package/dist/LinearPileupDisplay/doAfterAttach.js

@@ -1,71 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.doAfterAttach = doAfterAttach;
-const util_1 = require("@jbrowse/core/util");
-const tracks_1 = require("@jbrowse/core/util/tracks");
-const mobx_state_tree_1 = require("mobx-state-tree");
-const getUniqueModifications_1 = require("../shared/getUniqueModifications");
-const util_2 = require("../util");
-function doAfterAttach(model) {
-    (0, util_2.createAutorun)(model, async () => {
-        const view = (0, util_1.getContainingView)(model);
-        if (!model.autorunReady) {
-            return;
-        }
-        model.setCurrSortBpPerPx(view.bpPerPx);
-    }, { delay: 1000 });
-    (0, util_2.createAutorun)(model, async () => {
-        const { rpcManager } = (0, util_1.getSession)(model);
-        const view = (0, util_1.getContainingView)(model);
-        if (!model.autorunReady) {
-            return;
-        }
-        const { sortedBy, adapterConfig, rendererType, sortReady } = model;
-        const { bpPerPx } = view;
-        if (sortedBy && (!sortReady || model.currSortBpPerPx === view.bpPerPx)) {
-            const { pos, refName, assemblyName } = sortedBy;
-            await model.rendererType.renderInClient(rpcManager, {
-                assemblyName,
-                regions: [
-                    {
-                        start: pos,
-                        end: pos + 1,
-                        refName,
-                        assemblyName,
-                    },
-                ],
-                adapterConfig,
-                rendererType: rendererType.name,
-                sessionId: (0, tracks_1.getRpcSessionId)(model),
-                layoutId: (0, util_1.getContainingTrack)(model).id,
-                timeout: 1000000,
-                statusCallback: (arg) => {
-                    if ((0, mobx_state_tree_1.isAlive)(model)) {
-                        model.setMessage(arg);
-                    }
-                },
-                ...model.renderPropsPre(),
-            });
-        }
-        if ((0, mobx_state_tree_1.isAlive)(model)) {
-            model.setCurrSortBpPerPx(bpPerPx);
-            model.setSortReady(true);
-        }
-    }, { delay: 1000 });
-    (0, util_2.createAutorun)(model, async () => {
-        if (!model.autorunReady) {
-            return;
-        }
-        const { adapterConfig } = model;
-        const { staticBlocks } = (0, util_1.getContainingView)(model);
-        const vals = await (0, getUniqueModifications_1.getUniqueModifications)({
-            model,
-            adapterConfig,
-            blocks: staticBlocks,
-        });
-        if ((0, mobx_state_tree_1.isAlive)(model)) {
-            model.updateVisibleModifications(vals);
-            model.setModificationsReady(true);
-        }
-    }, { delay: 1000 });
-}

package/dist/LinearPileupDisplay/index.d.ts

@@ -1,5 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-export default function register(pluginManager: PluginManager): void;
-export { default as linearPileupDisplayStateModelFactory } from './model';
-export { default as linearPileupDisplayConfigSchemaFactory } from './configSchema';
-export { SharedLinearPileupDisplayMixin } from './SharedLinearPileupDisplayMixin';

package/dist/LinearPileupDisplay/index.js

@@ -1,32 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.SharedLinearPileupDisplayMixin = exports.linearPileupDisplayConfigSchemaFactory = exports.linearPileupDisplayStateModelFactory = void 0;
-exports.default = register;
-const DisplayType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/DisplayType"));
-const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
-const configSchema_1 = __importDefault(require("./configSchema"));
-const model_1 = __importDefault(require("./model"));
-function register(pluginManager) {
-    pluginManager.addDisplayType(() => {
-        const configSchema = (0, configSchema_1.default)(pluginManager);
-        return new DisplayType_1.default({
-            name: 'LinearPileupDisplay',
-            displayName: 'Pileup display',
-            configSchema,
-            stateModel: (0, model_1.default)(configSchema),
-            subDisplay: { type: 'LinearAlignmentsDisplay', lowerPanel: true },
-            trackType: 'AlignmentsTrack',
-            viewType: 'LinearGenomeView',
-            ReactComponent: plugin_linear_genome_view_1.BaseLinearDisplayComponent,
-        });
-    });
-}
-var model_2 = require("./model");
-Object.defineProperty(exports, "linearPileupDisplayStateModelFactory", { enumerable: true, get: function () { return __importDefault(model_2).default; } });
-var configSchema_2 = require("./configSchema");
-Object.defineProperty(exports, "linearPileupDisplayConfigSchemaFactory", { enumerable: true, get: function () { return __importDefault(configSchema_2).default; } });
-var SharedLinearPileupDisplayMixin_1 = require("./SharedLinearPileupDisplayMixin");
-Object.defineProperty(exports, "SharedLinearPileupDisplayMixin", { enumerable: true, get: function () { return SharedLinearPileupDisplayMixin_1.SharedLinearPileupDisplayMixin; } });