@jbrowse/plugin-alignments 3.2.0 → 3.4.0

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Files changed (47) hide show
  1. package/dist/AlignmentsFeatureDetail/AlignmentsFeatureDetail.js +7 -3
  2. package/dist/AlignmentsFeatureDetail/Flags.d.ts +1 -3
  3. package/dist/AlignmentsFeatureDetail/Flags.js +1 -2
  4. package/dist/AlignmentsFeatureDetail/LinkedPairedAlignments.d.ts +1 -1
  5. package/dist/AlignmentsFeatureDetail/LinkedPairedAlignments.js +1 -1
  6. package/dist/AlignmentsFeatureDetail/stateModelFactory.d.ts +9 -6
  7. package/dist/AlignmentsFeatureDetail/stateModelFactory.js +1 -2
  8. package/dist/BamAdapter/BamAdapter.d.ts +0 -1
  9. package/dist/BamAdapter/BamAdapter.js +0 -1
  10. package/dist/CramAdapter/CramAdapter.d.ts +0 -1
  11. package/dist/CramAdapter/CramAdapter.js +0 -1
  12. package/dist/CramAdapter/CramTestAdapters.d.ts +0 -1
  13. package/dist/CramAdapter/CramTestAdapters.js +0 -1
  14. package/dist/LinearPileupDisplay/SharedLinearPileupDisplayMixin.d.ts +1 -1
  15. package/dist/LinearPileupDisplay/SharedLinearPileupDisplayMixin.js +6 -4
  16. package/dist/LinearPileupDisplay/model.d.ts +1 -1
  17. package/dist/PileupRenderer/PileupRenderer.d.ts +4 -4
  18. package/dist/PileupRenderer/makeImageData.js +9 -14
  19. package/dist/PileupRenderer/renderModifications.js +25 -29
  20. package/dist/SNPCoverageAdapter/SNPCoverageAdapter.d.ts +0 -1
  21. package/dist/SNPCoverageAdapter/SNPCoverageAdapter.js +0 -1
  22. package/dist/SNPCoverageAdapter/processModifications.js +34 -38
  23. package/dist/SNPCoverageRenderer/makeImage.js +25 -36
  24. package/esm/AlignmentsFeatureDetail/AlignmentsFeatureDetail.js +8 -4
  25. package/esm/AlignmentsFeatureDetail/Flags.d.ts +1 -3
  26. package/esm/AlignmentsFeatureDetail/Flags.js +1 -2
  27. package/esm/AlignmentsFeatureDetail/LinkedPairedAlignments.d.ts +1 -1
  28. package/esm/AlignmentsFeatureDetail/LinkedPairedAlignments.js +1 -1
  29. package/esm/AlignmentsFeatureDetail/stateModelFactory.d.ts +9 -6
  30. package/esm/AlignmentsFeatureDetail/stateModelFactory.js +1 -2
  31. package/esm/BamAdapter/BamAdapter.d.ts +0 -1
  32. package/esm/BamAdapter/BamAdapter.js +0 -1
  33. package/esm/CramAdapter/CramAdapter.d.ts +0 -1
  34. package/esm/CramAdapter/CramAdapter.js +0 -1
  35. package/esm/CramAdapter/CramTestAdapters.d.ts +0 -1
  36. package/esm/CramAdapter/CramTestAdapters.js +0 -1
  37. package/esm/LinearPileupDisplay/SharedLinearPileupDisplayMixin.d.ts +1 -1
  38. package/esm/LinearPileupDisplay/SharedLinearPileupDisplayMixin.js +6 -4
  39. package/esm/LinearPileupDisplay/model.d.ts +1 -1
  40. package/esm/PileupRenderer/PileupRenderer.d.ts +4 -4
  41. package/esm/PileupRenderer/makeImageData.js +3 -8
  42. package/esm/PileupRenderer/renderModifications.js +25 -29
  43. package/esm/SNPCoverageAdapter/SNPCoverageAdapter.d.ts +0 -1
  44. package/esm/SNPCoverageAdapter/SNPCoverageAdapter.js +0 -1
  45. package/esm/SNPCoverageAdapter/processModifications.js +34 -38
  46. package/esm/SNPCoverageRenderer/makeImage.js +26 -37
  47. package/package.json +11 -11
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@jbrowse/plugin-alignments",
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- "version": "3.2.0",
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+ "version": "3.4.0",
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  "description": "JBrowse 2 alignments adapters, tracks, etc.",
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  "keywords": [
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  "jbrowse",
@@ -36,18 +36,18 @@
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  "clean": "rimraf dist esm *.tsbuildinfo"
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  },
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  "dependencies": {
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- "@gmod/bam": "^5.0.0",
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- "@gmod/cram": "^4.0.1",
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- "@jbrowse/core": "^3.2.0",
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- "@jbrowse/plugin-linear-genome-view": "^3.2.0",
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- "@jbrowse/plugin-wiggle": "^3.2.0",
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- "@jbrowse/sv-core": "^3.2.0",
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- "@mui/icons-material": "^6.0.0",
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- "@mui/material": "^6.0.0",
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+ "@gmod/bam": "^6.0.1",
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+ "@gmod/cram": "^5.0.4",
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+ "@jbrowse/core": "^3.4.0",
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+ "@jbrowse/plugin-linear-genome-view": "^3.4.0",
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+ "@jbrowse/plugin-wiggle": "^3.4.0",
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+ "@jbrowse/sv-core": "^3.4.0",
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+ "@mui/icons-material": "^7.0.0",
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+ "@mui/material": "^7.0.0",
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  "canvas2svg": "^1.0.16",
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  "copy-to-clipboard": "^3.3.1",
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  "fast-deep-equal": "^3.1.3",
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- "generic-filehandle2": "^1.0.0",
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+ "generic-filehandle2": "^2.0.1",
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  "mobx": "^6.0.0",
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  "mobx-react": "^9.0.0",
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  "mobx-state-tree": "^5.0.0",
@@ -63,5 +63,5 @@
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  "distModule": "esm/index.js",
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  "srcModule": "src/index.ts",
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  "module": "esm/index.js",
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- "gitHead": "c750e3f56706a490c19ba75abd807fec5e38aebf"
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+ "gitHead": "a9f1ac35fc2dd810bae92cdaf1fc19995bee4413"
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  }