npm - @jbrowse/plugin-alignments - Versions diffs - 2.6.1 → 2.6.3 - Mend

@jbrowse/plugin-alignments 2.6.1 → 2.6.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (534) hide show

package/dist/AlignmentsFeatureDetail/AlignmentsFeatureDetail.js CHANGED Viewed

@@ -131,4 +131,3 @@ exports.default = (0, mobx_react_1.observer)(function AlignmentFeatureDetails(pr
         SA ? react_1.default.createElement(AlignmentsFeatureSuppAligns_1.default, { model: model, tag: SA }) : null,
         feat.flags !== undefined ? (react_1.default.createElement(AlignmentsFeatureFlags_1.default, { feature: feat, ...props })) : null));
 });
-//# sourceMappingURL=AlignmentsFeatureDetail.js.map

package/dist/AlignmentsFeatureDetail/AlignmentsFeatureFlags.js CHANGED Viewed

@@ -42,4 +42,3 @@ function AlignmentFlags(props) {
         }))));
 }
 exports.default = AlignmentFlags;
-//# sourceMappingURL=AlignmentsFeatureFlags.js.map

package/dist/AlignmentsFeatureDetail/AlignmentsFeatureSuppAligns.js CHANGED Viewed

@@ -34,4 +34,3 @@ function SupplementaryAlignments(props) {
         }))));
 }
 exports.default = SupplementaryAlignments;
-//# sourceMappingURL=AlignmentsFeatureSuppAligns.js.map

package/dist/AlignmentsFeatureDetail/index.js CHANGED Viewed

@@ -51,4 +51,3 @@ function register(pluginManager) {
     }));
 }
 exports.default = register;
-//# sourceMappingURL=index.js.map

package/dist/AlignmentsFeatureDetail/util.js CHANGED Viewed

@@ -24,4 +24,3 @@ async function navToLoc(locString, model) {
     }
 }
 exports.navToLoc = navToLoc;
-//# sourceMappingURL=util.js.map

package/dist/AlignmentsTrack/configSchemaF.js CHANGED Viewed

@@ -16,4 +16,3 @@ function configSchemaFactory(pluginManager) {
     });
 }
 exports.default = configSchemaFactory;
-//# sourceMappingURL=configSchemaF.js.map

package/dist/AlignmentsTrack/index.js CHANGED Viewed

@@ -24,4 +24,3 @@ function register(pm) {
     });
 }
 exports.default = register;
-//# sourceMappingURL=index.js.map

package/dist/BamAdapter/BamAdapter.js CHANGED Viewed

@@ -177,4 +177,3 @@ class BamAdapter extends BaseAdapter_1.BaseFeatureDataAdapter {
     }
 }
 exports.default = BamAdapter;
-//# sourceMappingURL=BamAdapter.js.map

package/dist/BamAdapter/BamSlightlyLazyFeature.js CHANGED Viewed

@@ -101,4 +101,3 @@ class BamSlightlyLazyFeature {
     }
 }
 exports.default = BamSlightlyLazyFeature;
-//# sourceMappingURL=BamSlightlyLazyFeature.js.map

package/dist/BamAdapter/configSchema.js CHANGED Viewed

@@ -55,4 +55,3 @@ const configSchema = (0, configuration_1.ConfigurationSchema)('BamAdapter', {
     },
 }, { explicitlyTyped: true });
 exports.default = configSchema;
-//# sourceMappingURL=configSchema.js.map

package/dist/BamAdapter/index.js CHANGED Viewed

@@ -38,4 +38,3 @@ exports.default = (pluginManager) => {
         });
     });
 };
-//# sourceMappingURL=index.js.map

package/dist/CramAdapter/CramAdapter.js CHANGED Viewed

@@ -228,4 +228,3 @@ class CramAdapter extends BaseAdapter_1.BaseFeatureDataAdapter {
     }
 }
 exports.default = CramAdapter;
-//# sourceMappingURL=CramAdapter.js.map

package/dist/CramAdapter/CramSlightlyLazyFeature.js CHANGED Viewed

@@ -138,4 +138,3 @@ class CramSlightlyLazyFeature {
     }
 }
 exports.default = CramSlightlyLazyFeature;
-//# sourceMappingURL=CramSlightlyLazyFeature.js.map

package/dist/CramAdapter/CramTestAdapters.js CHANGED Viewed

@@ -77,4 +77,3 @@ class SequenceAdapter extends BaseAdapter_1.BaseFeatureDataAdapter {
     freeResources( /* { region } */) { }
 }
 exports.SequenceAdapter = SequenceAdapter;
-//# sourceMappingURL=CramTestAdapters.js.map

package/dist/CramAdapter/configSchema.js CHANGED Viewed

@@ -47,4 +47,3 @@ const configSchema = (0, configuration_1.ConfigurationSchema)('CramAdapter', {
     },
 }, { explicitlyTyped: true });
 exports.default = configSchema;
-//# sourceMappingURL=configSchema.js.map

package/dist/CramAdapter/index.js CHANGED Viewed

@@ -39,4 +39,3 @@ exports.default = (pluginManager) => {
         });
     });
 };
-//# sourceMappingURL=index.js.map

package/dist/CramAdapter/util.js CHANGED Viewed

@@ -238,4 +238,3 @@ function readFeaturesToCIGAR(readFeatures, alignmentStart, readLen, refRegion) {
     return cigar;
 }
 exports.readFeaturesToCIGAR = readFeaturesToCIGAR;
-//# sourceMappingURL=util.js.map

package/dist/GuessAlignmentsTypes/index.js CHANGED Viewed

@@ -53,4 +53,3 @@ exports.default = (pluginManager) => {
         };
     });
 };
-//# sourceMappingURL=index.js.map

package/dist/HtsgetBamAdapter/HtsgetBamAdapter.js CHANGED Viewed

@@ -25,4 +25,3 @@ class HtsgetBamAdapter extends BamAdapter_1.default {
     }
 }
 exports.default = HtsgetBamAdapter;
-//# sourceMappingURL=HtsgetBamAdapter.js.map

package/dist/HtsgetBamAdapter/configSchema.js CHANGED Viewed

@@ -33,4 +33,3 @@ const HtsgetBamAdapter = (0, configuration_1.ConfigurationSchema)('HtsgetBamAdap
     },
 }, { explicitlyTyped: true });
 exports.default = HtsgetBamAdapter;
-//# sourceMappingURL=configSchema.js.map

package/dist/HtsgetBamAdapter/index.js CHANGED Viewed

@@ -41,4 +41,3 @@ exports.default = (pluginManager) => {
         });
     });
 };
-//# sourceMappingURL=index.js.map

package/dist/LinearAlignmentsDisplay/components/AlignmentsDisplay.d.ts CHANGED Viewed

@@ -2,6 +2,6 @@ import React from 'react';
 import { AlignmentsDisplayModel } from '../models/model';
 declare function AlignmentsDisplay({ model }: {
     model: AlignmentsDisplayModel;
-}): React.JSX.Element;
+}): React.JSX.Element | null;
 declare const _default: typeof AlignmentsDisplay;
 export default _default;

package/dist/LinearAlignmentsDisplay/components/AlignmentsDisplay.js CHANGED Viewed

@@ -16,9 +16,13 @@ const useStyles = (0, mui_1.makeStyles)()({
     },
 });
 function AlignmentsDisplay({ model }) {
+    var _a;
     const { PileupDisplay, SNPCoverageDisplay } = model;
     const { classes } = useStyles();
-    const top = SNPCoverageDisplay.height;
+    if (!SNPCoverageDisplay) {
+        return null;
+    }
+    const top = (_a = SNPCoverageDisplay.height) !== null && _a !== void 0 ? _a : 100;
     return (react_1.default.createElement("div", { "data-testid": `display-${(0, configuration_1.getConf)(model, 'displayId')}`, style: { position: 'relative' } },
         react_1.default.createElement("div", { "data-testid": "Blockset-snpcoverage" },
             react_1.default.createElement(SNPCoverageDisplay.RenderingComponent, { model: SNPCoverageDisplay })),
@@ -33,4 +37,3 @@ function AlignmentsDisplay({ model }) {
             react_1.default.createElement(PileupDisplay.RenderingComponent, { model: PileupDisplay }))));
 }
 exports.default = (0, mobx_react_1.observer)(AlignmentsDisplay);
-//# sourceMappingURL=AlignmentsDisplay.js.map

package/dist/LinearAlignmentsDisplay/index.js CHANGED Viewed

@@ -23,4 +23,3 @@ function default_1(pluginManager) {
     });
 }
 exports.default = default_1;
-//# sourceMappingURL=index.js.map

package/dist/LinearAlignmentsDisplay/models/configSchema.js CHANGED Viewed

@@ -34,4 +34,3 @@ function configModelFactory(pm) {
     });
 }
 exports.default = configModelFactory;
-//# sourceMappingURL=configSchema.js.map

package/dist/LinearAlignmentsDisplay/models/model.js CHANGED Viewed

@@ -145,7 +145,8 @@ function stateModelFactory(pluginManager, configSchema) {
          * #method
          */
         searchFeatureByID(id) {
-            return self.PileupDisplay.searchFeatureByID(id);
+            var _a, _b;
+            return (_b = (_a = self.PileupDisplay).searchFeatureByID) === null || _b === void 0 ? void 0 : _b.call(_a, id);
         },
         /**
          * #getter
@@ -275,6 +276,9 @@ function stateModelFactory(pluginManager, configSchema) {
              * #method
              */
             trackMenuItems() {
+                if (!self.PileupDisplay) {
+                    return [];
+                }
                 const extra = getLowerPanelDisplays(pluginManager).map(d => ({
                     type: 'radio',
                     label: d.displayName,
@@ -312,4 +316,3 @@ function stateModelFactory(pluginManager, configSchema) {
     });
 }
 exports.default = stateModelFactory;
-//# sourceMappingURL=model.js.map