@jbrowse/plugin-alignments 2.5.0 → 2.6.0

package/esm/LinearAlignmentsDisplay/models/model.d.ts

@@ -24,6 +24,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
 }, {
     rendererTypeName: string;
     error: unknown;
+    message: string | undefined;
 } & {
     readonly RenderingComponent: React.FC<{
         model: {
@@ -33,6 +34,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
             rendererTypeName: string;
             error: unknown;
+            message: string | undefined;
         } & IStateTreeNode<import("mobx-state-tree").IModelType<{
             id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             type: import("mobx-state-tree").ISimpleType<string>;
@@ -40,6 +42,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
         }, {
             rendererTypeName: string;
             error: unknown;
+            message: string | undefined;
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
         onHorizontalScroll?: Function | undefined;
         blockState?: Record<string, any> | undefined;
@@ -52,6 +55,10 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
             rendererTypeName: string;
             error: unknown;
+            message: string | undefined; /**
+             * #property
+             * refers to LinearPileupDisplay sub-display model
+             */
         } & IStateTreeNode<import("mobx-state-tree").IModelType<{
             id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             type: import("mobx-state-tree").ISimpleType<string>;
@@ -59,19 +66,22 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
         }, {
             rendererTypeName: string;
             error: unknown;
+            message: string | undefined;
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
     }> | null;
-    readonly adapterConfig: any;
+    readonly adapterConfig: any; /**
+     * #stateModel LinearAlignmentsDisplay
+     * extends `BaseDisplay`
+     */
     readonly parentTrack: any;
     renderProps(): any;
     readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
     readonly DisplayMessageComponent: React.FC<any> | undefined;
     trackMenuItems(): MenuItem[];
-    readonly viewMenuActions: MenuItem[]; /**
-     * #action
-     */
-    regionCannotBeRendered(): undefined;
+    readonly viewMenuActions: MenuItem[];
+    regionCannotBeRendered(): null;
 } & {
+    setMessage(arg?: string | undefined): void;
     setError(error?: unknown): void;
     setRpcDriverName(rpcDriverName: string): void;
     reload(): void;
@@ -153,7 +163,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
      */
     renderSvg(opts: {
         rasterizeLayers?: boolean;
-    }): Promise<JSX.Element>;
+    }): Promise<React.JSX.Element>;
 } & {
     /**
      * #method

package/esm/LinearAlignmentsDisplay/models/model.js

@@ -253,7 +253,8 @@ function stateModelFactory(pluginManager, configSchema) {
          */
         async renderSvg(opts) {
             const pileupHeight = self.height - self.SNPCoverageDisplay.height;
-            await when(() => self.PileupDisplay.ready);
+            await when(() => !self.PileupDisplay.renderProps().notReady &&
+                !self.SNPCoverageDisplay.renderProps().notReady);
             return (React.createElement(React.Fragment, null,
                 React.createElement("g", null, await self.SNPCoverageDisplay.renderSvg(opts)),
                 React.createElement("g", { transform: `translate(0 ${self.SNPCoverageDisplay.height})` }, await self.PileupDisplay.renderSvg({

package/esm/LinearAlignmentsDisplay/models/model.js.map

@@ -1 +1 @@
-{"version":3,"file":"model.js","sourceRoot":"","sources":["../../../src/LinearAlignmentsDisplay/models/model.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,OAAO,EAAE,IAAI,EAAE,MAAM,MAAM,CAAA;AACpC,OAAO,EACL,WAAW,EACX,WAAW,EACX,OAAO,EACP,KAAK,GAGN,MAAM,iBAAiB,CAAA;AACxB,OAAO,SAAS,MAAM,iBAAiB,CAAA;AAEvC,UAAU;AACV,OAAO,EACL,sBAAsB,EAGtB,OAAO,GACR,MAAM,6BAA6B,CAAA;AACpC,OAAO,EAAE,WAAW,EAAE,MAAM,4CAA4C,CAAA;AAKxE,MAAM,gBAAgB,GAAG,EAAE,CAAA;AAE3B,SAAS,qBAAqB,CAAC,aAA4B;IACzD,OAAO,CACL,aAAa;SACV,kBAAkB,EAAE;QACrB,mBAAmB;SAClB,MAAM,CAAC,CAAC,CAAC,EAAE,WAAC,OAAA,CAAA,MAAA,CAAC,CAAC,UAAU,0CAAE,IAAI,MAAK,yBAAyB,CAAA,EAAA,CAAC;QAC9D,mBAAmB;SAClB,MAAM,CAAC,CAAC,CAAC,EAAE,WAAC,OAAA,MAAA,CAAC,CAAC,UAAU,0CAAE,UAAU,CAAA,EAAA,CAAC,CACzC,CAAA;AACH,CAAC;AAED,SAAS,QAAQ,CACf,EAAK,EACL,EAAK;IAEL,OAAO,SAAS,CACd,EAAE,CAAC,CAAC,CAAC,WAAW,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,SAAS,EAChC,EAAE,CAAC,CAAC,CAAC,WAAW,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,SAAS,CACjC,CAAA;AACH,CAAC;AAED,SAAS,QAAQ,CAAC,IAA4B;IAC5C,MAAM,EAAE,aAAa,EAAE,kBAAkB,EAAE,GAAG,IAAI,CAAA;IAClD,OAAO,CACL,aAAa;QACb,OAAO,CAAC,aAAa,CAAC;QACtB,kBAAkB;QAClB,OAAO,CAAC,kBAAkB,CAAC,CAC5B,CAAA;AACH,CAAC;AAED,SAAS,gBAAgB,CAAC,IAA4B;IACpD,MAAM,EAAE,aAAa,EAAE,kBAAkB,EAAE,GAAG,IAAI,CAAA;IAClD,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,IAAI,CAAC,aAAa,CAAC,OAAO,EAAE;QAC7C,OAAM;KACP;IACD,IAAI,CAAC,QAAQ,CAAC,aAAa,CAAC,OAAO,EAAE,kBAAkB,CAAC,OAAO,CAAC,EAAE;QAChE,kBAAkB,CAAC,UAAU,CAAC,WAAW,CAAC,aAAa,CAAC,OAAO,CAAC,CAAC,CAAA;KAClE;AACH,CAAC;AAED,SAAS,iBAAiB,CAAC,IAA4B;IACrD,MAAM,EAAE,aAAa,EAAE,kBAAkB,EAAE,GAAG,IAAI,CAAA;IAClD,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,IAAI,CAAC,aAAa,CAAC,QAAQ,EAAE;QAC9C,OAAM;KACP;IACD,IAAI,CAAC,QAAQ,CAAC,aAAa,CAAC,QAAQ,EAAE,kBAAkB,CAAC,QAAQ,CAAC,EAAE;QAClE,kBAAkB,CAAC,WAAW,CAAC,WAAW,CAAC,aAAa,CAAC,QAAQ,CAAC,CAAC,CAAA;KACpE;AACH,CAAC;AAED,SAAS,eAAe,CACtB,aAA4B,EAC5B,YAAwC;IAExC,MAAM,kBAAkB,GAAG,qBAAqB,CAAC,aAAa,CAAC,CAAC,GAAG,CACjE,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,UAAU,CAClB,CAAA;IAED,OAAO,KAAK,CAAC,KAAK,CAAC;QACjB;;;WAGG;QACH,aAAa,EAAE,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC,GAAG,kBAAkB,CAAC,CAAC;QAC9D;;;WAGG;QACH,kBAAkB,EAAE,KAAK,CAAC,KAAK,CAC7B,aAAa,CAAC,cAAc,CAAC,0BAA0B,CAAC,CAAC,UAAU,CACpE;QACD;;WAEG;QACH,YAAY,EAAE,EAAE;QAChB;;WAEG;QACH,IAAI,EAAE,KAAK,CAAC,OAAO,CAAC,yBAAyB,CAAC;QAC9C;;WAEG;QACH,aAAa,EAAE,sBAAsB,CAAC,YAAY,CAAC;QACnD;;WAEG;QACH,eAAe,EAAE,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC,MAAM,CAAC;QAC1C;;WAEG;QACH,wBAAwB,EAAE,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC,MAAM,CAAC;QACnD;;WAEG;QACH,cAAc,EAAE,qBAAqB;KACtC,CAAC,CAAA;AACJ,CAAC;AAED;;;GAGG;AACH,SAAS,iBAAiB,CACxB,aAA4B,EAC5B,YAAwC;IAExC,OAAO,KAAK;SACT,OAAO,CACN,yBAAyB,EACzB,WAAW,EACX,eAAe,CAAC,aAAa,EAAE,YAAY,CAAC,CAC7C;SACA,QAAQ,CAAC,GAAG,EAAE,CAAC,CAAC;QACf,SAAS,EAAE,CAAC;KACb,CAAC,CAAC;SACF,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB;;WAEG;QACH,YAAY,CAAC,SAAiB;YAC5B,IAAI,CAAC,SAAS,GAAG,SAAS,CAAA;QAC5B,CAAC;QAED;;WAEG;QACH,oBAAoB,CAAC,CAAS;YAC5B,IAAI,CAAC,YAAY,GAAG,CAAC,CAAA;QACvB,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd;;WAEG;QACH,IAAI,MAAM;;YACR,OAAO,MAAA,IAAI,CAAC,eAAe,mCAAI,OAAO,CAAC,IAAI,EAAE,QAAQ,CAAC,CAAA;QACxD,CAAC;QAED,IAAI,mBAAmB;YACrB,OAAO,CACL,IAAI,CAAC,aAAa,CAAC,mBAAmB;gBACtC,IAAI,CAAC,kBAAkB,CAAC,mBAAmB,CAC5C,CAAA;QACH,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd;;WAEG;QACH,IAAI,UAAU;YACZ,MAAM,IAAI,GAAG,OAAO,CAAC,IAAI,EAAE,eAAe,CAAC,CAAA;YAC3C,OAAO;gBACL,GAAG,IAAI;gBACP,IAAI,EAAE,IAAI,CAAC,cAAc;gBACzB,SAAS,EAAE,GAAG,IAAI,CAAC,aAAa,CAAC,SAAS,IAAI,IAAI,CAAC,cAAc,MAAM,EAAE,yEAAyE;aACnJ,CAAA;QACH,CAAC;QAED;;WAEG;QACH,cAAc,CAAC,QAAgB,EAAE,EAAU;YACzC,OAAO,IAAI,CAAC,aAAa,CAAC,cAAc,CAAC,QAAQ,EAAE,EAAE,CAAC,CAAA;QACxD,CAAC;QACD;;WAEG;QACH,iBAAiB,CAAC,EAAU;YAC1B,OAAO,IAAI,CAAC,aAAa,CAAC,iBAAiB,CAAC,EAAE,CAAC,CAAA;QACjD,CAAC;QAED;;WAEG;QACH,IAAI,QAAQ;YACV,OAAO,IAAI,CAAC,aAAa,CAAC,QAAQ,CAAA;QACpC,CAAC;QAED;;WAEG;QACH,IAAI,YAAY;;YACd,OAAO,MAAA,IAAI,CAAC,aAAa,0CAAE,YAAY,CAAA;QACzC,CAAC;QAED;;WAEG;QACH,IAAI,QAAQ;YACV,OAAO,IAAI,CAAC,aAAa,CAAC,QAAQ,CAAA;QACpC,CAAC;QAED;;WAEG;QACH,IAAI,YAAY;YACd,MAAM,IAAI,GAAG,OAAO,CAAC,IAAI,EAAE,oBAAoB,CAAC,CAAA;YAChD,OAAO;gBACL,GAAG,IAAI;gBACP,SAAS,EAAE,GAAG,IAAI,CAAC,aAAa,CAAC,SAAS,kBAAkB,EAAE,yEAAyE;aACxI,CAAA;QACH,CAAC;KACF,CAAC,CAAC;SACF,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB;;WAEG;QACH,qBAAqB,CAAC,aAAoC;YACxD,IAAI,CAAC,kBAAkB,GAAG;gBACxB,IAAI,EAAE,0BAA0B;gBAChC,aAAa;gBACb,MAAM,EAAE,IAAI,CAAC,YAAY;aAC1B,CAAA;QACH,CAAC;QACD;;WAEG;QACH,2BAA2B,CAAC,KAA2B;YACrD,IAAI,CAAC,aAAa,CAAC,2BAA2B,CAAC,KAAK,CAAC,CAAA;YACrD,IAAI,CAAC,kBAAkB,CAAC,2BAA2B,CAAC,KAAK,CAAC,CAAA;QAC5D,CAAC;QAED;;WAEG;QACH,gBAAgB,CAAC,aAAoC;YACnD,IAAI,CAAC,aAAa,GAAG;gBACnB,IAAI,EAAE,aAAa,CAAC,IAAI,IAAI,qBAAqB;gBACjD,aAAa;aACd,CAAA;QACH,CAAC;QACD;;WAEG;QACH,SAAS,CAAC,CAAS;YACjB,IAAI,CAAC,eAAe,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,gBAAgB,CAAC,CAAA;YACpD,OAAO,IAAI,CAAC,eAAe,CAAA;QAC7B,CAAC;QACD;;WAEG;QACH,iBAAiB,CAAC,IAAY;YAC5B,IAAI,CAAC,cAAc,GAAG,IAAI,CAAA;QAC5B,CAAC;QACD;;WAEG;QACH,YAAY,CAAC,QAAgB;YAC3B,MAAM,SAAS,GAAG,IAAI,CAAC,MAAM,CAAA;YAC7B,MAAM,SAAS,GAAG,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,MAAM,GAAG,QAAQ,CAAC,CAAA;YACxD,OAAO,SAAS,GAAG,SAAS,CAAA;QAC9B,CAAC;KACF,CAAC,CAAC;SACF,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB,WAAW;YACT,WAAW,CACT,IAAI,EACJ,OAAO,CAAC,GAAG,EAAE;gBACX,MAAM,EACJ,kBAAkB,EAClB,aAAa,EACb,YAAY,EACZ,UAAU,GACX,GAAG,IAAI,CAAA;gBAER,IAAI,CAAC,kBAAkB,EAAE;oBACvB,IAAI,CAAC,qBAAqB,CAAC,YAAY,CAAC,CAAA;iBACzC;qBAAM,IACL,CAAC,SAAS,CACR,YAAY,EACZ,WAAW,CAAC,kBAAkB,CAAC,aAAa,CAAC,CAC9C,EACD;oBACA,kBAAkB,CAAC,SAAS,CAAC,IAAI,CAAC,YAAY,CAAC,CAAA;oBAC/C,kBAAkB,CAAC,SAAS,CAAC,IAAI,CAAC,YAAY,CAAC,CAAA;iBAChD;gBAED,IAAI,CAAC,aAAa,IAAI,IAAI,CAAC,cAAc,KAAK,aAAa,CAAC,IAAI,EAAE;oBAChE,IAAI,CAAC,gBAAgB,CAAC,UAAU,CAAC,CAAA;iBAClC;qBAAM,IACL,CAAC,SAAS,CAAC,UAAU,EAAE,WAAW,CAAC,aAAa,CAAC,aAAa,CAAC,CAAC,EAChE;oBACA,aAAa,CAAC,SAAS,CAAC,IAAI,CAAC,UAAU,CAAC,CAAA;iBACzC;gBAED,gBAAgB,CAAC,IAA8B,CAAC,CAAA;gBAChD,iBAAiB,CAAC,IAA8B,CAAC,CAAA;YACnD,CAAC,CAAC,CACH,CAAA;YAED,WAAW,CACT,IAAI,EACJ,OAAO,CAAC,GAAG,EAAE;gBACX,IAAI,CAAC,oBAAoB,CAAC,IAAI,CAAC,kBAAkB,CAAC,MAAM,CAAC,CAAA;YAC3D,CAAC,CAAC,CACH,CAAA;YAED,WAAW,CACT,IAAI,EACJ,OAAO,CAAC,GAAG,EAAE;gBACX,IAAI,CAAC,aAAa,CAAC,SAAS,CAC1B,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,kBAAkB,CAAC,MAAM,CAC7C,CAAA;YACH,CAAC,CAAC,CACH,CAAA;QACH,CAAC;QACD;;WAEG;QACH,KAAK,CAAC,SAAS,CAAC,IAAmC;YACjD,MAAM,YAAY,GAAG,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,kBAAkB,CAAC,MAAM,CAAA;YACjE,MAAM,IAAI,CAAC,GAAG,EAAE,CAAC,IAAI,CAAC,aAAa,CAAC,KAAK,CAAC,CAAA;YAC1C,OAAO,CACL;gBACE,+BAAI,MAAM,IAAI,CAAC,kBAAkB,CAAC,SAAS,CAAC,IAAI,CAAC,CAAK;gBACtD,2BAAG,SAAS,EAAE,eAAe,IAAI,CAAC,kBAAkB,CAAC,MAAM,GAAG,IAC3D,MAAM,IAAI,CAAC,aAAa,CAAC,SAAS,CAAC;oBAClC,GAAG,IAAI;oBACP,cAAc,EAAE,YAAY;iBAC7B,CAAC,CACA,CACH,CACJ,CAAA;QACH,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE;QACZ,MAAM,EAAE,cAAc,EAAE,mBAAmB,EAAE,GAAG,IAAI,CAAA;QACpD,OAAO;YACL;;eAEG;YACH,cAAc;gBACZ,MAAM,KAAK,GAAG,qBAAqB,CAAC,aAAa,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;oBAC3D,IAAI,EAAE,OAAO;oBACb,KAAK,EAAE,CAAC,CAAC,WAAW;oBACpB,OAAO,EAAE,CAAC,CAAC,IAAI,KAAK,IAAI,CAAC,aAAa,CAAC,IAAI;oBAC3C,OAAO,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,iBAAiB,CAAC,CAAC,CAAC,IAAI,CAAC;iBAC9C,CAAC,CAAC,CAAA;gBACH,OAAO;oBACL,GAAG,mBAAmB,EAAE;oBACxB;wBACE,IAAI,EAAE,SAAS;wBACf,KAAK,EAAE,iBAAiB;wBACxB,OAAO,EAAE,IAAI,CAAC,aAAa,CAAC,cAAc,EAAE;qBAC7C;oBACD;wBACE,IAAI,EAAE,SAAS;wBACf,KAAK,EAAE,sBAAsB;wBAC7B,OAAO,EAAE,IAAI,CAAC,kBAAkB,CAAC,cAAc,EAAE;qBAClD;oBACD;wBACE,IAAI,EAAE,SAAS;wBACf,KAAK,EAAE,6BAA6B;wBACpC,OAAO,EAAE,KAAK;qBACf;iBACF,CAAA;YACH,CAAC;SACF,CAAA;IACH,CAAC,CAAC;SACD,kBAAkB,CAAC,IAAI,CAAC,EAAE;QACzB,IAAI,CAAC,IAAI,EAAE;YACT,OAAO,IAAI,CAAA;SACZ;QACD,mBAAmB;QACnB,MAAM,EAAE,MAAM,EAAE,GAAG,IAAI,EAAE,GAAG,IAAI,CAAA;QAChC,OAAO,EAAE,eAAe,EAAE,MAAM,EAAE,GAAG,IAAI,EAAE,CAAA;IAC7C,CAAC,CAAC,CAAA;AACN,CAAC;AAED,eAAe,iBAAiB,CAAA"}
+{"version":3,"file":"model.js","sourceRoot":"","sources":["../../../src/LinearAlignmentsDisplay/models/model.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,OAAO,EAAE,IAAI,EAAE,MAAM,MAAM,CAAA;AACpC,OAAO,EACL,WAAW,EACX,WAAW,EACX,OAAO,EACP,KAAK,GAGN,MAAM,iBAAiB,CAAA;AACxB,OAAO,SAAS,MAAM,iBAAiB,CAAA;AAEvC,UAAU;AACV,OAAO,EACL,sBAAsB,EAGtB,OAAO,GACR,MAAM,6BAA6B,CAAA;AACpC,OAAO,EAAE,WAAW,EAAE,MAAM,4CAA4C,CAAA;AAKxE,MAAM,gBAAgB,GAAG,EAAE,CAAA;AAE3B,SAAS,qBAAqB,CAAC,aAA4B;IACzD,OAAO,CACL,aAAa;SACV,kBAAkB,EAAE;QACrB,mBAAmB;SAClB,MAAM,CAAC,CAAC,CAAC,EAAE,WAAC,OAAA,CAAA,MAAA,CAAC,CAAC,UAAU,0CAAE,IAAI,MAAK,yBAAyB,CAAA,EAAA,CAAC;QAC9D,mBAAmB;SAClB,MAAM,CAAC,CAAC,CAAC,EAAE,WAAC,OAAA,MAAA,CAAC,CAAC,UAAU,0CAAE,UAAU,CAAA,EAAA,CAAC,CACzC,CAAA;AACH,CAAC;AAED,SAAS,QAAQ,CACf,EAAK,EACL,EAAK;IAEL,OAAO,SAAS,CACd,EAAE,CAAC,CAAC,CAAC,WAAW,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,SAAS,EAChC,EAAE,CAAC,CAAC,CAAC,WAAW,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,SAAS,CACjC,CAAA;AACH,CAAC;AAED,SAAS,QAAQ,CAAC,IAA4B;IAC5C,MAAM,EAAE,aAAa,EAAE,kBAAkB,EAAE,GAAG,IAAI,CAAA;IAClD,OAAO,CACL,aAAa;QACb,OAAO,CAAC,aAAa,CAAC;QACtB,kBAAkB;QAClB,OAAO,CAAC,kBAAkB,CAAC,CAC5B,CAAA;AACH,CAAC;AAED,SAAS,gBAAgB,CAAC,IAA4B;IACpD,MAAM,EAAE,aAAa,EAAE,kBAAkB,EAAE,GAAG,IAAI,CAAA;IAClD,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,IAAI,CAAC,aAAa,CAAC,OAAO,EAAE;QAC7C,OAAM;KACP;IACD,IAAI,CAAC,QAAQ,CAAC,aAAa,CAAC,OAAO,EAAE,kBAAkB,CAAC,OAAO,CAAC,EAAE;QAChE,kBAAkB,CAAC,UAAU,CAAC,WAAW,CAAC,aAAa,CAAC,OAAO,CAAC,CAAC,CAAA;KAClE;AACH,CAAC;AAED,SAAS,iBAAiB,CAAC,IAA4B;IACrD,MAAM,EAAE,aAAa,EAAE,kBAAkB,EAAE,GAAG,IAAI,CAAA;IAClD,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,IAAI,CAAC,aAAa,CAAC,QAAQ,EAAE;QAC9C,OAAM;KACP;IACD,IAAI,CAAC,QAAQ,CAAC,aAAa,CAAC,QAAQ,EAAE,kBAAkB,CAAC,QAAQ,CAAC,EAAE;QAClE,kBAAkB,CAAC,WAAW,CAAC,WAAW,CAAC,aAAa,CAAC,QAAQ,CAAC,CAAC,CAAA;KACpE;AACH,CAAC;AAED,SAAS,eAAe,CACtB,aAA4B,EAC5B,YAAwC;IAExC,MAAM,kBAAkB,GAAG,qBAAqB,CAAC,aAAa,CAAC,CAAC,GAAG,CACjE,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,UAAU,CAClB,CAAA;IAED,OAAO,KAAK,CAAC,KAAK,CAAC;QACjB;;;WAGG;QACH,aAAa,EAAE,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC,GAAG,kBAAkB,CAAC,CAAC;QAC9D;;;WAGG;QACH,kBAAkB,EAAE,KAAK,CAAC,KAAK,CAC7B,aAAa,CAAC,cAAc,CAAC,0BAA0B,CAAC,CAAC,UAAU,CACpE;QACD;;WAEG;QACH,YAAY,EAAE,EAAE;QAChB;;WAEG;QACH,IAAI,EAAE,KAAK,CAAC,OAAO,CAAC,yBAAyB,CAAC;QAC9C;;WAEG;QACH,aAAa,EAAE,sBAAsB,CAAC,YAAY,CAAC;QACnD;;WAEG;QACH,eAAe,EAAE,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC,MAAM,CAAC;QAC1C;;WAEG;QACH,wBAAwB,EAAE,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC,MAAM,CAAC;QACnD;;WAEG;QACH,cAAc,EAAE,qBAAqB;KACtC,CAAC,CAAA;AACJ,CAAC;AAED;;;GAGG;AACH,SAAS,iBAAiB,CACxB,aAA4B,EAC5B,YAAwC;IAExC,OAAO,KAAK;SACT,OAAO,CACN,yBAAyB,EACzB,WAAW,EACX,eAAe,CAAC,aAAa,EAAE,YAAY,CAAC,CAC7C;SACA,QAAQ,CAAC,GAAG,EAAE,CAAC,CAAC;QACf,SAAS,EAAE,CAAC;KACb,CAAC,CAAC;SACF,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB;;WAEG;QACH,YAAY,CAAC,SAAiB;YAC5B,IAAI,CAAC,SAAS,GAAG,SAAS,CAAA;QAC5B,CAAC;QAED;;WAEG;QACH,oBAAoB,CAAC,CAAS;YAC5B,IAAI,CAAC,YAAY,GAAG,CAAC,CAAA;QACvB,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd;;WAEG;QACH,IAAI,MAAM;;YACR,OAAO,MAAA,IAAI,CAAC,eAAe,mCAAI,OAAO,CAAC,IAAI,EAAE,QAAQ,CAAC,CAAA;QACxD,CAAC;QAED,IAAI,mBAAmB;YACrB,OAAO,CACL,IAAI,CAAC,aAAa,CAAC,mBAAmB;gBACtC,IAAI,CAAC,kBAAkB,CAAC,mBAAmB,CAC5C,CAAA;QACH,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd;;WAEG;QACH,IAAI,UAAU;YACZ,MAAM,IAAI,GAAG,OAAO,CAAC,IAAI,EAAE,eAAe,CAAC,CAAA;YAC3C,OAAO;gBACL,GAAG,IAAI;gBACP,IAAI,EAAE,IAAI,CAAC,cAAc;gBACzB,SAAS,EAAE,GAAG,IAAI,CAAC,aAAa,CAAC,SAAS,IAAI,IAAI,CAAC,cAAc,MAAM,EAAE,yEAAyE;aACnJ,CAAA;QACH,CAAC;QAED;;WAEG;QACH,cAAc,CAAC,QAAgB,EAAE,EAAU;YACzC,OAAO,IAAI,CAAC,aAAa,CAAC,cAAc,CAAC,QAAQ,EAAE,EAAE,CAAC,CAAA;QACxD,CAAC;QACD;;WAEG;QACH,iBAAiB,CAAC,EAAU;YAC1B,OAAO,IAAI,CAAC,aAAa,CAAC,iBAAiB,CAAC,EAAE,CAAC,CAAA;QACjD,CAAC;QAED;;WAEG;QACH,IAAI,QAAQ;YACV,OAAO,IAAI,CAAC,aAAa,CAAC,QAAQ,CAAA;QACpC,CAAC;QAED;;WAEG;QACH,IAAI,YAAY;;YACd,OAAO,MAAA,IAAI,CAAC,aAAa,0CAAE,YAAY,CAAA;QACzC,CAAC;QAED;;WAEG;QACH,IAAI,QAAQ;YACV,OAAO,IAAI,CAAC,aAAa,CAAC,QAAQ,CAAA;QACpC,CAAC;QAED;;WAEG;QACH,IAAI,YAAY;YACd,MAAM,IAAI,GAAG,OAAO,CAAC,IAAI,EAAE,oBAAoB,CAAC,CAAA;YAChD,OAAO;gBACL,GAAG,IAAI;gBACP,SAAS,EAAE,GAAG,IAAI,CAAC,aAAa,CAAC,SAAS,kBAAkB,EAAE,yEAAyE;aACxI,CAAA;QACH,CAAC;KACF,CAAC,CAAC;SACF,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB;;WAEG;QACH,qBAAqB,CAAC,aAAoC;YACxD,IAAI,CAAC,kBAAkB,GAAG;gBACxB,IAAI,EAAE,0BAA0B;gBAChC,aAAa;gBACb,MAAM,EAAE,IAAI,CAAC,YAAY;aAC1B,CAAA;QACH,CAAC;QACD;;WAEG;QACH,2BAA2B,CAAC,KAA2B;YACrD,IAAI,CAAC,aAAa,CAAC,2BAA2B,CAAC,KAAK,CAAC,CAAA;YACrD,IAAI,CAAC,kBAAkB,CAAC,2BAA2B,CAAC,KAAK,CAAC,CAAA;QAC5D,CAAC;QAED;;WAEG;QACH,gBAAgB,CAAC,aAAoC;YACnD,IAAI,CAAC,aAAa,GAAG;gBACnB,IAAI,EAAE,aAAa,CAAC,IAAI,IAAI,qBAAqB;gBACjD,aAAa;aACd,CAAA;QACH,CAAC;QACD;;WAEG;QACH,SAAS,CAAC,CAAS;YACjB,IAAI,CAAC,eAAe,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,gBAAgB,CAAC,CAAA;YACpD,OAAO,IAAI,CAAC,eAAe,CAAA;QAC7B,CAAC;QACD;;WAEG;QACH,iBAAiB,CAAC,IAAY;YAC5B,IAAI,CAAC,cAAc,GAAG,IAAI,CAAA;QAC5B,CAAC;QACD;;WAEG;QACH,YAAY,CAAC,QAAgB;YAC3B,MAAM,SAAS,GAAG,IAAI,CAAC,MAAM,CAAA;YAC7B,MAAM,SAAS,GAAG,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,MAAM,GAAG,QAAQ,CAAC,CAAA;YACxD,OAAO,SAAS,GAAG,SAAS,CAAA;QAC9B,CAAC;KACF,CAAC,CAAC;SACF,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB,WAAW;YACT,WAAW,CACT,IAAI,EACJ,OAAO,CAAC,GAAG,EAAE;gBACX,MAAM,EACJ,kBAAkB,EAClB,aAAa,EACb,YAAY,EACZ,UAAU,GACX,GAAG,IAAI,CAAA;gBAER,IAAI,CAAC,kBAAkB,EAAE;oBACvB,IAAI,CAAC,qBAAqB,CAAC,YAAY,CAAC,CAAA;iBACzC;qBAAM,IACL,CAAC,SAAS,CACR,YAAY,EACZ,WAAW,CAAC,kBAAkB,CAAC,aAAa,CAAC,CAC9C,EACD;oBACA,kBAAkB,CAAC,SAAS,CAAC,IAAI,CAAC,YAAY,CAAC,CAAA;oBAC/C,kBAAkB,CAAC,SAAS,CAAC,IAAI,CAAC,YAAY,CAAC,CAAA;iBAChD;gBAED,IAAI,CAAC,aAAa,IAAI,IAAI,CAAC,cAAc,KAAK,aAAa,CAAC,IAAI,EAAE;oBAChE,IAAI,CAAC,gBAAgB,CAAC,UAAU,CAAC,CAAA;iBAClC;qBAAM,IACL,CAAC,SAAS,CAAC,UAAU,EAAE,WAAW,CAAC,aAAa,CAAC,aAAa,CAAC,CAAC,EAChE;oBACA,aAAa,CAAC,SAAS,CAAC,IAAI,CAAC,UAAU,CAAC,CAAA;iBACzC;gBAED,gBAAgB,CAAC,IAA8B,CAAC,CAAA;gBAChD,iBAAiB,CAAC,IAA8B,CAAC,CAAA;YACnD,CAAC,CAAC,CACH,CAAA;YAED,WAAW,CACT,IAAI,EACJ,OAAO,CAAC,GAAG,EAAE;gBACX,IAAI,CAAC,oBAAoB,CAAC,IAAI,CAAC,kBAAkB,CAAC,MAAM,CAAC,CAAA;YAC3D,CAAC,CAAC,CACH,CAAA;YAED,WAAW,CACT,IAAI,EACJ,OAAO,CAAC,GAAG,EAAE;gBACX,IAAI,CAAC,aAAa,CAAC,SAAS,CAC1B,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,kBAAkB,CAAC,MAAM,CAC7C,CAAA;YACH,CAAC,CAAC,CACH,CAAA;QACH,CAAC;QACD;;WAEG;QACH,KAAK,CAAC,SAAS,CAAC,IAAmC;YACjD,MAAM,YAAY,GAAG,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,kBAAkB,CAAC,MAAM,CAAA;YACjE,MAAM,IAAI,CACR,GAAG,EAAE,CACH,CAAC,IAAI,CAAC,aAAa,CAAC,WAAW,EAAE,CAAC,QAAQ;gBAC1C,CAAC,IAAI,CAAC,kBAAkB,CAAC,WAAW,EAAE,CAAC,QAAQ,CAClD,CAAA;YACD,OAAO,CACL;gBACE,+BAAI,MAAM,IAAI,CAAC,kBAAkB,CAAC,SAAS,CAAC,IAAI,CAAC,CAAK;gBACtD,2BAAG,SAAS,EAAE,eAAe,IAAI,CAAC,kBAAkB,CAAC,MAAM,GAAG,IAC3D,MAAM,IAAI,CAAC,aAAa,CAAC,SAAS,CAAC;oBAClC,GAAG,IAAI;oBACP,cAAc,EAAE,YAAY;iBAC7B,CAAC,CACA,CACH,CACJ,CAAA;QACH,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE;QACZ,MAAM,EAAE,cAAc,EAAE,mBAAmB,EAAE,GAAG,IAAI,CAAA;QACpD,OAAO;YACL;;eAEG;YACH,cAAc;gBACZ,MAAM,KAAK,GAAG,qBAAqB,CAAC,aAAa,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;oBAC3D,IAAI,EAAE,OAAO;oBACb,KAAK,EAAE,CAAC,CAAC,WAAW;oBACpB,OAAO,EAAE,CAAC,CAAC,IAAI,KAAK,IAAI,CAAC,aAAa,CAAC,IAAI;oBAC3C,OAAO,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,iBAAiB,CAAC,CAAC,CAAC,IAAI,CAAC;iBAC9C,CAAC,CAAC,CAAA;gBACH,OAAO;oBACL,GAAG,mBAAmB,EAAE;oBACxB;wBACE,IAAI,EAAE,SAAS;wBACf,KAAK,EAAE,iBAAiB;wBACxB,OAAO,EAAE,IAAI,CAAC,aAAa,CAAC,cAAc,EAAE;qBAC7C;oBACD;wBACE,IAAI,EAAE,SAAS;wBACf,KAAK,EAAE,sBAAsB;wBAC7B,OAAO,EAAE,IAAI,CAAC,kBAAkB,CAAC,cAAc,EAAE;qBAClD;oBACD;wBACE,IAAI,EAAE,SAAS;wBACf,KAAK,EAAE,6BAA6B;wBACpC,OAAO,EAAE,KAAK;qBACf;iBACF,CAAA;YACH,CAAC;SACF,CAAA;IACH,CAAC,CAAC;SACD,kBAAkB,CAAC,IAAI,CAAC,EAAE;QACzB,IAAI,CAAC,IAAI,EAAE;YACT,OAAO,IAAI,CAAA;SACZ;QACD,mBAAmB;QACnB,MAAM,EAAE,MAAM,EAAE,GAAG,IAAI,EAAE,GAAG,IAAI,CAAA;QAChC,OAAO,EAAE,eAAe,EAAE,MAAM,EAAE,GAAG,IAAI,EAAE,CAAA;IAC7C,CAAC,CAAC,CAAA;AACN,CAAC;AAED,eAAe,iBAAiB,CAAA"}

package/esm/LinearPileupDisplay/components/ColorByModifications.d.ts

@@ -1,3 +1,4 @@
+import React from 'react';
 import { ObservableMap } from 'mobx';
 declare function ColorByTagDlg(props: {
     model: {
@@ -10,6 +11,6 @@ declare function ColorByTagDlg(props: {
         };
     };
     handleClose: () => void;
-}): JSX.Element;
+}): React.JSX.Element;
 declare const _default: typeof ColorByTagDlg;
 export default _default;

package/esm/LinearPileupDisplay/components/ColorByModifications.js

@@ -2,27 +2,7 @@ import React from 'react';
 import { observer } from 'mobx-react';
 import { Button, CircularProgress, DialogActions, DialogContent, Typography, } from '@mui/material';
 import { Dialog } from '@jbrowse/core/ui';
-import { makeStyles } from 'tss-react/mui';
-const useStyles = makeStyles()(theme => ({
-    table: {
-        border: '1px solid #888',
-        margin: theme.spacing(4),
-        '& td': {
-            padding: theme.spacing(1),
-        },
-    },
-}));
-function ModificationTable({ modifications, }) {
-    const { classes } = useStyles();
-    return (React.createElement("table", { className: classes.table },
-        React.createElement("tbody", null, modifications.map(([key, value]) => (React.createElement("tr", { key: key },
-            React.createElement("td", null, key),
-            React.createElement("td", null, value),
-            React.createElement("td", { style: {
-                    width: '1em',
-                    background: value,
-                } })))))));
-}
+import ModificationTable from './ModificationsTable';
 function ColorByTagDlg(props) {
     const { model, handleClose } = props;
     const { colorBy, modificationTagMap } = model;
@@ -34,7 +14,7 @@ function ColorByTagDlg(props) {
             React.createElement("div", { style: { margin: 20 } },
                 (colorBy === null || colorBy === void 0 ? void 0 : colorBy.type) === 'modifications' ? (React.createElement("div", null, modifications.length ? (React.createElement(React.Fragment, null,
                     "Current modification-type-to-color mapping",
-                    React.createElement(ModificationTable, { modifications: [...modificationTagMap.entries()] }))) : (React.createElement("div", null,
+                    React.createElement(ModificationTable, { modifications: [...modificationTagMap.entries()] }))) : (React.createElement(React.Fragment, null,
                     React.createElement(Typography, null, "Note: color by modifications is already enabled. Loading current modifications..."),
                     React.createElement(CircularProgress, { size: 15 }))))) : null,
                 (colorBy === null || colorBy === void 0 ? void 0 : colorBy.type) === 'methylation' ? (React.createElement(ModificationTable, { modifications: [

package/esm/LinearPileupDisplay/components/ColorByModifications.js.map

@@ -1 +1 @@
-{"version":3,"file":"ColorByModifications.js","sourceRoot":"","sources":["../../../src/LinearPileupDisplay/components/ColorByModifications.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EACL,MAAM,EACN,gBAAgB,EAChB,aAAa,EACb,aAAa,EACb,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,KAAK,EAAE;QACL,MAAM,EAAE,gBAAgB;QACxB,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACxB,MAAM,EAAE;YACN,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;SAC1B;KACF;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,iBAAiB,CAAC,EACzB,aAAa,GAGd;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,CACL,+BAAO,SAAS,EAAE,OAAO,CAAC,KAAK;QAC7B,mCACG,aAAa,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,EAAE,KAAK,CAAC,EAAE,EAAE,CAAC,CACnC,4BAAI,GAAG,EAAE,GAAG;YACV,gCAAK,GAAG,CAAM;YACd,gCAAK,KAAK,CAAM;YAChB,4BACE,KAAK,EAAE;oBACL,KAAK,EAAE,KAAK;oBACZ,UAAU,EAAE,KAAK;iBAClB,GACD,CACC,CACN,CAAC,CACI,CACF,CACT,CAAA;AACH,CAAC;AAED,SAAS,aAAa,CAAC,KAOtB;IACC,MAAM,EAAE,KAAK,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IACpC,MAAM,EAAE,OAAO,EAAE,kBAAkB,EAAE,GAAG,KAAK,CAAA;IAE7C,MAAM,aAAa,GAAG,CAAC,GAAG,kBAAkB,CAAC,OAAO,EAAE,CAAC,CAAA;IAEvD,OAAO,CACL,oBAAC,MAAM,IAAC,IAAI,QAAC,OAAO,EAAE,WAAW,EAAE,KAAK,EAAC,wBAAwB;QAC/D,oBAAC,aAAa;YACZ,oBAAC,UAAU,oRAKE;YACb,oBAAC,UAAU,yIAGE;YACb,6BAAK,KAAK,EAAE,EAAE,MAAM,EAAE,EAAE,EAAE;gBACvB,CAAA,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAE,IAAI,MAAK,eAAe,CAAC,CAAC,CAAC,CACnC,iCACG,aAAa,CAAC,MAAM,CAAC,CAAC,CAAC,CACtB;;oBAEE,oBAAC,iBAAiB,IAChB,aAAa,EAAE,CAAC,GAAG,kBAAkB,CAAC,OAAO,EAAE,CAAC,GAChD,CACD,CACJ,CAAC,CAAC,CAAC,CACF;oBACE,oBAAC,UAAU,4FAGE;oBACb,oBAAC,gBAAgB,IAAC,IAAI,EAAE,EAAE,GAAI,CAC1B,CACP,CACG,CACP,CAAC,CAAC,CAAC,IAAI;gBACP,CAAA,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAE,IAAI,MAAK,aAAa,CAAC,CAAC,CAAC,CACjC,oBAAC,iBAAiB,IAChB,aAAa,EAAE;wBACb,CAAC,YAAY,EAAE,KAAK,CAAC;wBACrB,CAAC,cAAc,EAAE,MAAM,CAAC;qBACzB,GACD,CACH,CAAC,CAAC,CAAC,IAAI,CACJ;YACN,oBAAC,aAAa;gBACZ,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,cAAc,CAAC,EAAE,IAAI,EAAE,eAAe,EAAE,CAAC,CAAA;wBAC/C,WAAW,EAAE,CAAA;oBACf,CAAC,oBAGM;gBACT,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,cAAc,CAAC,EAAE,IAAI,EAAE,aAAa,EAAE,CAAC,CAAA;wBAC7C,WAAW,EAAE,CAAA;oBACf,CAAC,kBAGM;gBACT,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,WAAW,EACjB,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,aAGrB,CACK,CACF,CACT,CACV,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,aAAa,CAAC,CAAA"}
+{"version":3,"file":"ColorByModifications.js","sourceRoot":"","sources":["../../../src/LinearPileupDisplay/components/ColorByModifications.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EACL,MAAM,EACN,gBAAgB,EAChB,aAAa,EACb,aAAa,EACb,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,iBAAiB,MAAM,sBAAsB,CAAA;AAEpD,SAAS,aAAa,CAAC,KAOtB;IACC,MAAM,EAAE,KAAK,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IACpC,MAAM,EAAE,OAAO,EAAE,kBAAkB,EAAE,GAAG,KAAK,CAAA;IAE7C,MAAM,aAAa,GAAG,CAAC,GAAG,kBAAkB,CAAC,OAAO,EAAE,CAAC,CAAA;IAEvD,OAAO,CACL,oBAAC,MAAM,IAAC,IAAI,QAAC,OAAO,EAAE,WAAW,EAAE,KAAK,EAAC,wBAAwB;QAC/D,oBAAC,aAAa;YACZ,oBAAC,UAAU,oRAKE;YACb,oBAAC,UAAU,yIAGE;YACb,6BAAK,KAAK,EAAE,EAAE,MAAM,EAAE,EAAE,EAAE;gBACvB,CAAA,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAE,IAAI,MAAK,eAAe,CAAC,CAAC,CAAC,CACnC,iCACG,aAAa,CAAC,MAAM,CAAC,CAAC,CAAC,CACtB;;oBAEE,oBAAC,iBAAiB,IAChB,aAAa,EAAE,CAAC,GAAG,kBAAkB,CAAC,OAAO,EAAE,CAAC,GAChD,CACD,CACJ,CAAC,CAAC,CAAC,CACF;oBACE,oBAAC,UAAU,4FAGE;oBACb,oBAAC,gBAAgB,IAAC,IAAI,EAAE,EAAE,GAAI,CAC7B,CACJ,CACG,CACP,CAAC,CAAC,CAAC,IAAI;gBACP,CAAA,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAE,IAAI,MAAK,aAAa,CAAC,CAAC,CAAC,CACjC,oBAAC,iBAAiB,IAChB,aAAa,EAAE;wBACb,CAAC,YAAY,EAAE,KAAK,CAAC;wBACrB,CAAC,cAAc,EAAE,MAAM,CAAC;qBACzB,GACD,CACH,CAAC,CAAC,CAAC,IAAI,CACJ;YACN,oBAAC,aAAa;gBACZ,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,cAAc,CAAC,EAAE,IAAI,EAAE,eAAe,EAAE,CAAC,CAAA;wBAC/C,WAAW,EAAE,CAAA;oBACf,CAAC,oBAGM;gBACT,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,cAAc,CAAC,EAAE,IAAI,EAAE,aAAa,EAAE,CAAC,CAAA;wBAC7C,WAAW,EAAE,CAAA;oBACf,CAAC,kBAGM;gBACT,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,WAAW,EACjB,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,aAGrB,CACK,CACF,CACT,CACV,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,aAAa,CAAC,CAAA"}

package/esm/LinearPileupDisplay/components/ColorByTag.d.ts

@@ -1,8 +1,9 @@
+import React from 'react';
 declare function ColorByTagDlg(props: {
     model: {
         setColorScheme: Function;
     };
     handleClose: () => void;
-}): JSX.Element;
+}): React.JSX.Element;
 declare const _default: typeof ColorByTagDlg;
 export default _default;

package/esm/LinearPileupDisplay/components/ColorByTag.js

@@ -12,14 +12,10 @@ function ColorByTagDlg(props) {
             React.createElement(Typography, { color: "textSecondary" }, "Examples: XS or TS for RNA-seq inferred read strand, ts (lower-case) for minimap2 read strand, HP for haplotype, RG for read group, etc."),
             React.createElement(TextField, { value: tag, onChange: event => setTag(event.target.value), placeholder: "Enter tag name", inputProps: {
                     maxLength: 2,
-                    'data-testid': 'color-tag-name-input',
-                }, error: tag.length === 2 && !validTag, helperText: tag.length === 2 && !validTag ? 'Not a valid tag' : '', autoComplete: "off", "data-testid": "color-tag-name" }),
+                }, error: tag.length === 2 && !validTag, helperText: tag.length === 2 && !validTag ? 'Not a valid tag' : '', autoComplete: "off" }),
             React.createElement(DialogActions, null,
                 React.createElement(Button, { variant: "contained", color: "primary", onClick: () => {
-                        model.setColorScheme({
-                            type: 'tag',
-                            tag,
-                        });
+                        model.setColorScheme({ type: 'tag', tag });
                         handleClose();
                     }, disabled: !validTag }, "Submit"),
                 React.createElement(Button, { variant: "contained", color: "secondary", onClick: handleClose }, "Cancel")))));

package/esm/LinearPileupDisplay/components/ColorByTag.js.map

@@ -1 +1 @@
-{"version":3,"file":"ColorByTag.js","sourceRoot":"","sources":["../../../src/LinearPileupDisplay/components/ColorByTag.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EACL,MAAM,EACN,aAAa,EACb,aAAa,EACb,SAAS,EACT,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AAEzC,SAAS,aAAa,CAAC,KAGtB;IACC,MAAM,EAAE,KAAK,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IACpC,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IAClC,MAAM,QAAQ,GAAG,GAAG,CAAC,KAAK,CAAC,uBAAuB,CAAC,CAAA;IAEnD,OAAO,CACL,oBAAC,MAAM,IAAC,IAAI,QAAC,OAAO,EAAE,WAAW,EAAE,KAAK,EAAC,cAAc;QACrD,oBAAC,aAAa,IAAC,KAAK,EAAE,EAAE,SAAS,EAAE,QAAQ,EAAE;YAC3C,oBAAC,UAAU,kCAAqC;YAChD,oBAAC,UAAU,IAAC,KAAK,EAAC,eAAe,+IAGpB;YAEb,oBAAC,SAAS,IACR,KAAK,EAAE,GAAG,EACV,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,EAC7C,WAAW,EAAC,gBAAgB,EAC5B,UAAU,EAAE;oBACV,SAAS,EAAE,CAAC;oBACZ,aAAa,EAAE,sBAAsB;iBACtC,EACD,KAAK,EAAE,GAAG,CAAC,MAAM,KAAK,CAAC,IAAI,CAAC,QAAQ,EACpC,UAAU,EAAE,GAAG,CAAC,MAAM,KAAK,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,iBAAiB,CAAC,CAAC,CAAC,EAAE,EAClE,YAAY,EAAC,KAAK,iBACN,gBAAgB,GAC5B;YACF,oBAAC,aAAa;gBACZ,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,cAAc,CAAC;4BACnB,IAAI,EAAE,KAAK;4BACX,GAAG;yBACJ,CAAC,CAAA;wBACF,WAAW,EAAE,CAAA;oBACf,CAAC,EACD,QAAQ,EAAE,CAAC,QAAQ,aAGZ;gBACT,oBAAC,MAAM,IAAC,OAAO,EAAC,WAAW,EAAC,KAAK,EAAC,WAAW,EAAC,OAAO,EAAE,WAAW,aAEzD,CACK,CACF,CACT,CACV,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,aAAa,CAAC,CAAA"}
+{"version":3,"file":"ColorByTag.js","sourceRoot":"","sources":["../../../src/LinearPileupDisplay/components/ColorByTag.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EACL,MAAM,EACN,aAAa,EACb,aAAa,EACb,SAAS,EACT,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AAEzC,SAAS,aAAa,CAAC,KAGtB;IACC,MAAM,EAAE,KAAK,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IACpC,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IAClC,MAAM,QAAQ,GAAG,GAAG,CAAC,KAAK,CAAC,uBAAuB,CAAC,CAAA;IAEnD,OAAO,CACL,oBAAC,MAAM,IAAC,IAAI,QAAC,OAAO,EAAE,WAAW,EAAE,KAAK,EAAC,cAAc;QACrD,oBAAC,aAAa,IAAC,KAAK,EAAE,EAAE,SAAS,EAAE,QAAQ,EAAE;YAC3C,oBAAC,UAAU,kCAAqC;YAChD,oBAAC,UAAU,IAAC,KAAK,EAAC,eAAe,+IAGpB;YAEb,oBAAC,SAAS,IACR,KAAK,EAAE,GAAG,EACV,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,EAC7C,WAAW,EAAC,gBAAgB,EAC5B,UAAU,EAAE;oBACV,SAAS,EAAE,CAAC;iBACb,EACD,KAAK,EAAE,GAAG,CAAC,MAAM,KAAK,CAAC,IAAI,CAAC,QAAQ,EACpC,UAAU,EAAE,GAAG,CAAC,MAAM,KAAK,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,iBAAiB,CAAC,CAAC,CAAC,EAAE,EAClE,YAAY,EAAC,KAAK,GAClB;YACF,oBAAC,aAAa;gBACZ,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,cAAc,CAAC,EAAE,IAAI,EAAE,KAAK,EAAE,GAAG,EAAE,CAAC,CAAA;wBAC1C,WAAW,EAAE,CAAA;oBACf,CAAC,EACD,QAAQ,EAAE,CAAC,QAAQ,aAGZ;gBACT,oBAAC,MAAM,IAAC,OAAO,EAAC,WAAW,EAAC,KAAK,EAAC,WAAW,EAAC,OAAO,EAAE,WAAW,aAEzD,CACK,CACF,CACT,CACV,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,aAAa,CAAC,CAAA"}

package/esm/LinearPileupDisplay/components/LinearPileupDisplayBlurb.d.ts

@@ -1,12 +1,13 @@
+import React from 'react';
 export interface LinearPileupDisplayBlurbProps {
     model: {
         sortedBy?: {
             pos: number;
             refName: number;
             type: string;
+            tag?: string;
         };
     };
 }
-declare function LinearPileupDisplayBlurb(props: LinearPileupDisplayBlurbProps): JSX.Element | null;
-declare const _default: typeof LinearPileupDisplayBlurb;
+declare const _default: (props: LinearPileupDisplayBlurbProps) => React.JSX.Element | null;
 export default _default;

package/esm/LinearPileupDisplay/components/LinearPileupDisplayBlurb.js

@@ -1,13 +1,13 @@
 import React from 'react';
 import { observer } from 'mobx-react';
 import { Typography } from '@mui/material';
-function LinearPileupDisplayBlurb(props) {
+export default observer(function LinearPileupDisplayBlurb(props) {
+    var _a;
     const { model } = props;
     const { sortedBy } = model;
-    return sortedBy ? (React.createElement("div", { "data-testid": `blurb-${model.sortedBy}`, style: { backgroundColor: 'white' } },
-        React.createElement(Typography, { color: "secondary", variant: "caption" }, model.sortedBy
-            ? `Sorted by ${sortedBy.type.toLowerCase()} at ${sortedBy.refName}:${sortedBy.pos}`
+    return sortedBy ? (React.createElement("div", { "data-testid": `blurb-${sortedBy}` },
+        React.createElement(Typography, { color: "secondary", variant: "caption" }, sortedBy
+            ? `Sorted by ${(_a = sortedBy.tag) !== null && _a !== void 0 ? _a : sortedBy.type} at ${sortedBy.refName}:${sortedBy.pos}`
             : null))) : null;
-}
-export default observer(LinearPileupDisplayBlurb);
+});
 //# sourceMappingURL=LinearPileupDisplayBlurb.js.map

package/esm/LinearPileupDisplay/components/LinearPileupDisplayBlurb.js.map

@@ -1 +1 @@
-{"version":3,"file":"LinearPileupDisplayBlurb.js","sourceRoot":"","sources":["../../../src/LinearPileupDisplay/components/LinearPileupDisplayBlurb.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAY1C,SAAS,wBAAwB,CAAC,KAAoC;IACpE,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IACvB,MAAM,EAAE,QAAQ,EAAE,GAAG,KAAK,CAAA;IAC1B,OAAO,QAAQ,CAAC,CAAC,CAAC,CAChB,4CACe,SAAS,KAAK,CAAC,QAAQ,EAAE,EACtC,KAAK,EAAE,EAAE,eAAe,EAAE,OAAO,EAAE;QAEnC,oBAAC,UAAU,IAAC,KAAK,EAAC,WAAW,EAAC,OAAO,EAAC,SAAS,IAC5C,KAAK,CAAC,QAAQ;YACb,CAAC,CAAC,aAAa,QAAQ,CAAC,IAAI,CAAC,WAAW,EAAE,OAAO,QAAQ,CAAC,OAAO,IAC7D,QAAQ,CAAC,GACX,EAAE;YACJ,CAAC,CAAC,IAAI,CACG,CACT,CACP,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC;AACD,eAAe,QAAQ,CAAC,wBAAwB,CAAC,CAAA"}
+{"version":3,"file":"LinearPileupDisplayBlurb.js","sourceRoot":"","sources":["../../../src/LinearPileupDisplay/components/LinearPileupDisplayBlurb.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAa1C,eAAe,QAAQ,CAAC,SAAS,wBAAwB,CACvD,KAAoC;;IAEpC,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IACvB,MAAM,EAAE,QAAQ,EAAE,GAAG,KAAK,CAAA;IAC1B,OAAO,QAAQ,CAAC,CAAC,CAAC,CAChB,4CAAkB,SAAS,QAAQ,EAAE;QACnC,oBAAC,UAAU,IAAC,KAAK,EAAC,WAAW,EAAC,OAAO,EAAC,SAAS,IAC5C,QAAQ;YACP,CAAC,CAAC,aAAa,MAAA,QAAQ,CAAC,GAAG,mCAAI,QAAQ,CAAC,IAAI,OACxC,QAAQ,CAAC,OACX,IAAI,QAAQ,CAAC,GAAG,EAAE;YACpB,CAAC,CAAC,IAAI,CACG,CACT,CACP,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC,CAAC,CAAA"}

package/esm/LinearPileupDisplay/components/ModificationsTable.d.ts

@@ -0,0 +1,4 @@
+import React from 'react';
+export default function ModificationTable({ modifications, }: {
+    modifications: [string, string | undefined][];
+}): React.JSX.Element;

package/esm/LinearPileupDisplay/components/ModificationsTable.js

@@ -0,0 +1,23 @@
+import React from 'react';
+import { makeStyles } from 'tss-react/mui';
+const useStyles = makeStyles()(theme => ({
+    table: {
+        border: '1px solid #888',
+        margin: theme.spacing(4),
+        '& td': {
+            padding: theme.spacing(1),
+        },
+    },
+}));
+export default function ModificationTable({ modifications, }) {
+    const { classes } = useStyles();
+    return (React.createElement("table", { className: classes.table },
+        React.createElement("tbody", null, modifications.map(([key, value]) => (React.createElement("tr", { key: key },
+            React.createElement("td", null, key),
+            React.createElement("td", null, value),
+            React.createElement("td", { style: {
+                    width: '1em',
+                    background: value,
+                } })))))));
+}
+//# sourceMappingURL=ModificationsTable.js.map

package/esm/LinearPileupDisplay/components/ModificationsTable.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"ModificationsTable.js","sourceRoot":"","sources":["../../../src/LinearPileupDisplay/components/ModificationsTable.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,KAAK,EAAE;QACL,MAAM,EAAE,gBAAgB;QACxB,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACxB,MAAM,EAAE;YACN,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;SAC1B;KACF;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,CAAC,OAAO,UAAU,iBAAiB,CAAC,EACxC,aAAa,GAGd;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,CACL,+BAAO,SAAS,EAAE,OAAO,CAAC,KAAK;QAC7B,mCACG,aAAa,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,EAAE,KAAK,CAAC,EAAE,EAAE,CAAC,CACnC,4BAAI,GAAG,EAAE,GAAG;YACV,gCAAK,GAAG,CAAM;YACd,gCAAK,KAAK,CAAM;YAChB,4BACE,KAAK,EAAE;oBACL,KAAK,EAAE,KAAK;oBACZ,UAAU,EAAE,KAAK;iBAClB,GACD,CACC,CACN,CAAC,CACI,CACF,CACT,CAAA;AACH,CAAC"}

package/esm/LinearPileupDisplay/components/SetFeatureHeight.d.ts

@@ -1,3 +1,4 @@
+import React from 'react';
 declare function SetFeatureHeightDlg(props: {
     model: {
         setFeatureHeight: (arg?: number) => void;
@@ -6,6 +7,6 @@ declare function SetFeatureHeightDlg(props: {
         noSpacing?: boolean;
     };
     handleClose: () => void;
-}): JSX.Element;
+}): React.JSX.Element;
 declare const _default: typeof SetFeatureHeightDlg;
 export default _default;

package/esm/LinearPileupDisplay/components/SetMaxHeight.d.ts

@@ -1,9 +1,10 @@
+import React from 'react';
 declare function SetMaxHeightDlg(props: {
     model: {
         maxHeight?: number;
         setMaxHeight: Function;
     };
     handleClose: () => void;
-}): JSX.Element;
+}): React.JSX.Element;
 declare const _default: typeof SetMaxHeightDlg;
 export default _default;

package/esm/LinearPileupDisplay/components/SortByTag.d.ts

@@ -1,8 +1,9 @@
+import React from 'react';
 declare function SortByTagDlg(props: {
     model: {
         setSortedBy: Function;
     };
     handleClose: () => void;
-}): JSX.Element;
+}): React.JSX.Element;
 declare const _default: typeof SortByTagDlg;
 export default _default;