@jbrowse/plugin-alignments 2.4.2 → 2.6.0

package/esm/LinearPileupDisplay/components/ColorByModifications.d.ts

@@ -1,4 +1,4 @@
-/// <reference types="react" />
+import React from 'react';
 import { ObservableMap } from 'mobx';
 declare function ColorByTagDlg(props: {
     model: {
@@ -11,6 +11,6 @@ declare function ColorByTagDlg(props: {
         };
     };
     handleClose: () => void;
-}): JSX.Element;
+}): React.JSX.Element;
 declare const _default: typeof ColorByTagDlg;
 export default _default;

package/esm/LinearPileupDisplay/components/ColorByModifications.js

@@ -2,27 +2,7 @@ import React from 'react';
 import { observer } from 'mobx-react';
 import { Button, CircularProgress, DialogActions, DialogContent, Typography, } from '@mui/material';
 import { Dialog } from '@jbrowse/core/ui';
-import { makeStyles } from 'tss-react/mui';
-const useStyles = makeStyles()(theme => ({
-    table: {
-        border: '1px solid #888',
-        margin: theme.spacing(4),
-        '& td': {
-            padding: theme.spacing(1),
-        },
-    },
-}));
-function ModificationTable({ modifications, }) {
-    const { classes } = useStyles();
-    return (React.createElement("table", { className: classes.table },
-        React.createElement("tbody", null, modifications.map(([key, value]) => (React.createElement("tr", { key: key },
-            React.createElement("td", null, key),
-            React.createElement("td", null, value),
-            React.createElement("td", { style: {
-                    width: '1em',
-                    background: value,
-                } })))))));
-}
+import ModificationTable from './ModificationsTable';
 function ColorByTagDlg(props) {
     const { model, handleClose } = props;
     const { colorBy, modificationTagMap } = model;
@@ -34,7 +14,7 @@ function ColorByTagDlg(props) {
             React.createElement("div", { style: { margin: 20 } },
                 (colorBy === null || colorBy === void 0 ? void 0 : colorBy.type) === 'modifications' ? (React.createElement("div", null, modifications.length ? (React.createElement(React.Fragment, null,
                     "Current modification-type-to-color mapping",
-                    React.createElement(ModificationTable, { modifications: [...modificationTagMap.entries()] }))) : (React.createElement("div", null,
+                    React.createElement(ModificationTable, { modifications: [...modificationTagMap.entries()] }))) : (React.createElement(React.Fragment, null,
                     React.createElement(Typography, null, "Note: color by modifications is already enabled. Loading current modifications..."),
                     React.createElement(CircularProgress, { size: 15 }))))) : null,
                 (colorBy === null || colorBy === void 0 ? void 0 : colorBy.type) === 'methylation' ? (React.createElement(ModificationTable, { modifications: [

package/esm/LinearPileupDisplay/components/ColorByModifications.js.map

@@ -1 +1 @@
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+{"version":3,"file":"ColorByModifications.js","sourceRoot":"","sources":["../../../src/LinearPileupDisplay/components/ColorByModifications.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EACL,MAAM,EACN,gBAAgB,EAChB,aAAa,EACb,aAAa,EACb,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,iBAAiB,MAAM,sBAAsB,CAAA;AAEpD,SAAS,aAAa,CAAC,KAOtB;IACC,MAAM,EAAE,KAAK,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IACpC,MAAM,EAAE,OAAO,EAAE,kBAAkB,EAAE,GAAG,KAAK,CAAA;IAE7C,MAAM,aAAa,GAAG,CAAC,GAAG,kBAAkB,CAAC,OAAO,EAAE,CAAC,CAAA;IAEvD,OAAO,CACL,oBAAC,MAAM,IAAC,IAAI,QAAC,OAAO,EAAE,WAAW,EAAE,KAAK,EAAC,wBAAwB;QAC/D,oBAAC,aAAa;YACZ,oBAAC,UAAU,oRAKE;YACb,oBAAC,UAAU,yIAGE;YACb,6BAAK,KAAK,EAAE,EAAE,MAAM,EAAE,EAAE,EAAE;gBACvB,CAAA,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAE,IAAI,MAAK,eAAe,CAAC,CAAC,CAAC,CACnC,iCACG,aAAa,CAAC,MAAM,CAAC,CAAC,CAAC,CACtB;;oBAEE,oBAAC,iBAAiB,IAChB,aAAa,EAAE,CAAC,GAAG,kBAAkB,CAAC,OAAO,EAAE,CAAC,GAChD,CACD,CACJ,CAAC,CAAC,CAAC,CACF;oBACE,oBAAC,UAAU,4FAGE;oBACb,oBAAC,gBAAgB,IAAC,IAAI,EAAE,EAAE,GAAI,CAC7B,CACJ,CACG,CACP,CAAC,CAAC,CAAC,IAAI;gBACP,CAAA,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAE,IAAI,MAAK,aAAa,CAAC,CAAC,CAAC,CACjC,oBAAC,iBAAiB,IAChB,aAAa,EAAE;wBACb,CAAC,YAAY,EAAE,KAAK,CAAC;wBACrB,CAAC,cAAc,EAAE,MAAM,CAAC;qBACzB,GACD,CACH,CAAC,CAAC,CAAC,IAAI,CACJ;YACN,oBAAC,aAAa;gBACZ,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,cAAc,CAAC,EAAE,IAAI,EAAE,eAAe,EAAE,CAAC,CAAA;wBAC/C,WAAW,EAAE,CAAA;oBACf,CAAC,oBAGM;gBACT,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,cAAc,CAAC,EAAE,IAAI,EAAE,aAAa,EAAE,CAAC,CAAA;wBAC7C,WAAW,EAAE,CAAA;oBACf,CAAC,kBAGM;gBACT,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,WAAW,EACjB,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,aAGrB,CACK,CACF,CACT,CACV,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,aAAa,CAAC,CAAA"}

package/esm/LinearPileupDisplay/components/ColorByTag.d.ts

@@ -1,9 +1,9 @@
-/// <reference types="react" />
+import React from 'react';
 declare function ColorByTagDlg(props: {
     model: {
         setColorScheme: Function;
     };
     handleClose: () => void;
-}): JSX.Element;
+}): React.JSX.Element;
 declare const _default: typeof ColorByTagDlg;
 export default _default;

package/esm/LinearPileupDisplay/components/ColorByTag.js

@@ -12,14 +12,10 @@ function ColorByTagDlg(props) {
             React.createElement(Typography, { color: "textSecondary" }, "Examples: XS or TS for RNA-seq inferred read strand, ts (lower-case) for minimap2 read strand, HP for haplotype, RG for read group, etc."),
             React.createElement(TextField, { value: tag, onChange: event => setTag(event.target.value), placeholder: "Enter tag name", inputProps: {
                     maxLength: 2,
-                    'data-testid': 'color-tag-name-input',
-                }, error: tag.length === 2 && !validTag, helperText: tag.length === 2 && !validTag ? 'Not a valid tag' : '', autoComplete: "off", "data-testid": "color-tag-name" }),
+                }, error: tag.length === 2 && !validTag, helperText: tag.length === 2 && !validTag ? 'Not a valid tag' : '', autoComplete: "off" }),
             React.createElement(DialogActions, null,
                 React.createElement(Button, { variant: "contained", color: "primary", onClick: () => {
-                        model.setColorScheme({
-                            type: 'tag',
-                            tag,
-                        });
+                        model.setColorScheme({ type: 'tag', tag });
                         handleClose();
                     }, disabled: !validTag }, "Submit"),
                 React.createElement(Button, { variant: "contained", color: "secondary", onClick: handleClose }, "Cancel")))));

package/esm/LinearPileupDisplay/components/ColorByTag.js.map

@@ -1 +1 @@
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+{"version":3,"file":"ColorByTag.js","sourceRoot":"","sources":["../../../src/LinearPileupDisplay/components/ColorByTag.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EACL,MAAM,EACN,aAAa,EACb,aAAa,EACb,SAAS,EACT,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AAEzC,SAAS,aAAa,CAAC,KAGtB;IACC,MAAM,EAAE,KAAK,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IACpC,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IAClC,MAAM,QAAQ,GAAG,GAAG,CAAC,KAAK,CAAC,uBAAuB,CAAC,CAAA;IAEnD,OAAO,CACL,oBAAC,MAAM,IAAC,IAAI,QAAC,OAAO,EAAE,WAAW,EAAE,KAAK,EAAC,cAAc;QACrD,oBAAC,aAAa,IAAC,KAAK,EAAE,EAAE,SAAS,EAAE,QAAQ,EAAE;YAC3C,oBAAC,UAAU,kCAAqC;YAChD,oBAAC,UAAU,IAAC,KAAK,EAAC,eAAe,+IAGpB;YAEb,oBAAC,SAAS,IACR,KAAK,EAAE,GAAG,EACV,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,EAC7C,WAAW,EAAC,gBAAgB,EAC5B,UAAU,EAAE;oBACV,SAAS,EAAE,CAAC;iBACb,EACD,KAAK,EAAE,GAAG,CAAC,MAAM,KAAK,CAAC,IAAI,CAAC,QAAQ,EACpC,UAAU,EAAE,GAAG,CAAC,MAAM,KAAK,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,iBAAiB,CAAC,CAAC,CAAC,EAAE,EAClE,YAAY,EAAC,KAAK,GAClB;YACF,oBAAC,aAAa;gBACZ,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,cAAc,CAAC,EAAE,IAAI,EAAE,KAAK,EAAE,GAAG,EAAE,CAAC,CAAA;wBAC1C,WAAW,EAAE,CAAA;oBACf,CAAC,EACD,QAAQ,EAAE,CAAC,QAAQ,aAGZ;gBACT,oBAAC,MAAM,IAAC,OAAO,EAAC,WAAW,EAAC,KAAK,EAAC,WAAW,EAAC,OAAO,EAAE,WAAW,aAEzD,CACK,CACF,CACT,CACV,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,aAAa,CAAC,CAAA"}

package/esm/LinearPileupDisplay/components/LinearPileupDisplayBlurb.d.ts

@@ -1,13 +1,13 @@
-/// <reference types="react" />
+import React from 'react';
 export interface LinearPileupDisplayBlurbProps {
     model: {
         sortedBy?: {
             pos: number;
             refName: number;
             type: string;
+            tag?: string;
         };
     };
 }
-declare function LinearPileupDisplayBlurb(props: LinearPileupDisplayBlurbProps): JSX.Element | null;
-declare const _default: typeof LinearPileupDisplayBlurb;
+declare const _default: (props: LinearPileupDisplayBlurbProps) => React.JSX.Element | null;
 export default _default;

package/esm/LinearPileupDisplay/components/LinearPileupDisplayBlurb.js

@@ -1,13 +1,13 @@
 import React from 'react';
 import { observer } from 'mobx-react';
 import { Typography } from '@mui/material';
-function LinearPileupDisplayBlurb(props) {
+export default observer(function LinearPileupDisplayBlurb(props) {
+    var _a;
     const { model } = props;
     const { sortedBy } = model;
-    return sortedBy ? (React.createElement("div", { "data-testid": `blurb-${model.sortedBy}`, style: { backgroundColor: 'white' } },
-        React.createElement(Typography, { color: "secondary", variant: "caption" }, model.sortedBy
-            ? `Sorted by ${sortedBy.type.toLowerCase()} at ${sortedBy.refName}:${sortedBy.pos}`
+    return sortedBy ? (React.createElement("div", { "data-testid": `blurb-${sortedBy}` },
+        React.createElement(Typography, { color: "secondary", variant: "caption" }, sortedBy
+            ? `Sorted by ${(_a = sortedBy.tag) !== null && _a !== void 0 ? _a : sortedBy.type} at ${sortedBy.refName}:${sortedBy.pos}`
             : null))) : null;
-}
-export default observer(LinearPileupDisplayBlurb);
+});
 //# sourceMappingURL=LinearPileupDisplayBlurb.js.map

package/esm/LinearPileupDisplay/components/LinearPileupDisplayBlurb.js.map

@@ -1 +1 @@
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+{"version":3,"file":"LinearPileupDisplayBlurb.js","sourceRoot":"","sources":["../../../src/LinearPileupDisplay/components/LinearPileupDisplayBlurb.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAa1C,eAAe,QAAQ,CAAC,SAAS,wBAAwB,CACvD,KAAoC;;IAEpC,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IACvB,MAAM,EAAE,QAAQ,EAAE,GAAG,KAAK,CAAA;IAC1B,OAAO,QAAQ,CAAC,CAAC,CAAC,CAChB,4CAAkB,SAAS,QAAQ,EAAE;QACnC,oBAAC,UAAU,IAAC,KAAK,EAAC,WAAW,EAAC,OAAO,EAAC,SAAS,IAC5C,QAAQ;YACP,CAAC,CAAC,aAAa,MAAA,QAAQ,CAAC,GAAG,mCAAI,QAAQ,CAAC,IAAI,OACxC,QAAQ,CAAC,OACX,IAAI,QAAQ,CAAC,GAAG,EAAE;YACpB,CAAC,CAAC,IAAI,CACG,CACT,CACP,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC,CAAC,CAAA"}

package/esm/LinearPileupDisplay/components/ModificationsTable.d.ts

@@ -0,0 +1,4 @@
+import React from 'react';
+export default function ModificationTable({ modifications, }: {
+    modifications: [string, string | undefined][];
+}): React.JSX.Element;

package/esm/LinearPileupDisplay/components/ModificationsTable.js

@@ -0,0 +1,23 @@
+import React from 'react';
+import { makeStyles } from 'tss-react/mui';
+const useStyles = makeStyles()(theme => ({
+    table: {
+        border: '1px solid #888',
+        margin: theme.spacing(4),
+        '& td': {
+            padding: theme.spacing(1),
+        },
+    },
+}));
+export default function ModificationTable({ modifications, }) {
+    const { classes } = useStyles();
+    return (React.createElement("table", { className: classes.table },
+        React.createElement("tbody", null, modifications.map(([key, value]) => (React.createElement("tr", { key: key },
+            React.createElement("td", null, key),
+            React.createElement("td", null, value),
+            React.createElement("td", { style: {
+                    width: '1em',
+                    background: value,
+                } })))))));
+}
+//# sourceMappingURL=ModificationsTable.js.map

package/esm/LinearPileupDisplay/components/ModificationsTable.js.map

@@ -0,0 +1 @@
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package/esm/LinearPileupDisplay/components/SetFeatureHeight.d.ts

@@ -1,4 +1,4 @@
-/// <reference types="react" />
+import React from 'react';
 declare function SetFeatureHeightDlg(props: {
     model: {
         setFeatureHeight: (arg?: number) => void;
@@ -7,6 +7,6 @@ declare function SetFeatureHeightDlg(props: {
         noSpacing?: boolean;
     };
     handleClose: () => void;
-}): JSX.Element;
+}): React.JSX.Element;
 declare const _default: typeof SetFeatureHeightDlg;
 export default _default;

package/esm/LinearPileupDisplay/components/SetMaxHeight.d.ts

@@ -1,10 +1,10 @@
-/// <reference types="react" />
+import React from 'react';
 declare function SetMaxHeightDlg(props: {
     model: {
         maxHeight?: number;
         setMaxHeight: Function;
     };
     handleClose: () => void;
-}): JSX.Element;
+}): React.JSX.Element;
 declare const _default: typeof SetMaxHeightDlg;
 export default _default;

package/esm/LinearPileupDisplay/components/SetMaxHeight.js

@@ -3,11 +3,11 @@ import { observer } from 'mobx-react';
 import { Button, DialogActions, DialogContent, TextField, Typography, } from '@mui/material';
 import { Dialog } from '@jbrowse/core/ui';
 import { makeStyles } from 'tss-react/mui';
-const useStyles = makeStyles()(theme => ({
+const useStyles = makeStyles()({
     root: {
         width: 500,
     },
-}));
+});
 function SetMaxHeightDlg(props) {
     const { model, handleClose } = props;
     const { classes } = useStyles();
@@ -16,9 +16,7 @@ function SetMaxHeightDlg(props) {
     return (React.createElement(Dialog, { open: true, onClose: handleClose, title: "Filter options" },
         React.createElement(DialogContent, { className: classes.root },
             React.createElement(Typography, null, "Set max height for the track. For example, you can increase this if the layout says \"Max height reached\""),
-            React.createElement(TextField, { value: max, onChange: event => {
-                    setMax(event.target.value);
-                }, placeholder: "Enter max height for layout" }),
+            React.createElement(TextField, { value: max, onChange: event => setMax(event.target.value), placeholder: "Enter max height for layout" }),
             React.createElement(DialogActions, null,
                 React.createElement(Button, { variant: "contained", color: "primary", type: "submit", autoFocus: true, onClick: () => {
                         model.setMaxHeight(max !== '' && !Number.isNaN(+max) ? +max : undefined);

package/esm/LinearPileupDisplay/components/SetMaxHeight.js.map

@@ -1 +1 @@
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+{"version":3,"file":"SetMaxHeight.js","sourceRoot":"","sources":["../../../src/LinearPileupDisplay/components/SetMaxHeight.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EACL,MAAM,EACN,aAAa,EACb,aAAa,EACb,SAAS,EACT,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,IAAI,EAAE;QACJ,KAAK,EAAE,GAAG;KACX;CACF,CAAC,CAAA;AAEF,SAAS,eAAe,CAAC,KAMxB;IACC,MAAM,EAAE,KAAK,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IACpC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,SAAS,GAAG,EAAE,EAAE,GAAG,KAAK,CAAA;IAChC,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,GAAG,QAAQ,CAAC,GAAG,SAAS,EAAE,CAAC,CAAA;IAE9C,OAAO,CACL,oBAAC,MAAM,IAAC,IAAI,QAAC,OAAO,EAAE,WAAW,EAAE,KAAK,EAAC,gBAAgB;QACvD,oBAAC,aAAa,IAAC,SAAS,EAAE,OAAO,CAAC,IAAI;YACpC,oBAAC,UAAU,qHAGE;YACb,oBAAC,SAAS,IACR,KAAK,EAAE,GAAG,EACV,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,EAC7C,WAAW,EAAC,6BAA6B,GACzC;YACF,oBAAC,aAAa;gBACZ,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,IAAI,EAAC,QAAQ,EACb,SAAS,QACT,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,YAAY,CAChB,GAAG,KAAK,EAAE,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,CACrD,CAAA;wBACD,WAAW,EAAE,CAAA;oBACf,CAAC,aAGM;gBACT,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,WAAW,EACjB,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,aAGrB,CACK,CACF,CACT,CACV,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,eAAe,CAAC,CAAA"}

package/esm/LinearPileupDisplay/components/SortByTag.d.ts

@@ -1,9 +1,9 @@
-/// <reference types="react" />
+import React from 'react';
 declare function SortByTagDlg(props: {
     model: {
         setSortedBy: Function;
     };
     handleClose: () => void;
-}): JSX.Element;
+}): React.JSX.Element;
 declare const _default: typeof SortByTagDlg;
 export default _default;

package/esm/LinearPileupDisplay/configSchema.d.ts

@@ -1,3 +1,59 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-declare function configSchemaF(pluginManager: PluginManager): import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+declare function configSchemaF(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    /**
+     * #slot
+     */
+    defaultRendering: {
+        type: string;
+        model: import("mobx-state-tree").ISimpleType<string>;
+        defaultValue: string;
+    };
+    /**
+     * #slot
+     */
+    renderers: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+        PileupRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+    /**
+     * #slot
+     */
+    maxFeatureScreenDensity: {
+        type: string;
+        description: string;
+        defaultValue: number;
+    };
+    /**
+     * #slot
+     */
+    colorScheme: {
+        type: string;
+        model: import("mobx-state-tree").ISimpleType<string>;
+        description: string;
+        defaultValue: string;
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    renderer: import("mobx-state-tree").IAnyModelType;
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    maxFeatureScreenDensity: {
+        type: string;
+        description: string;
+        defaultValue: number;
+    };
+    fetchSizeLimit: {
+        type: string;
+        defaultValue: number;
+        description: string;
+    };
+    height: {
+        type: string;
+        defaultValue: number;
+        description: string;
+    };
+    mouseover: {
+        type: string;
+        description: string;
+        defaultValue: string;
+        contextVariable: string[];
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>, undefined>>;
 export default configSchemaF;