@jbrowse/plugin-alignments 2.4.1 → 2.4.2

package/dist/NestedFrequencyTable.js

@@ -1,94 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-/* eslint-disable @typescript-eslint/no-explicit-any */
-// see perf results on object.keys vs for-in loop
-// https://jsperf.com/object-keys-vs-hasownproperty/55
-class NestedFrequencyTable {
-    constructor(initialData = {}) {
-        this.categories = { ...initialData };
-    }
-    // get the sum of all the category counts
-    total() {
-        // calculate total if necessary
-        let t = 0;
-        for (const k in this.categories) {
-            const v = this.categories[k];
-            t += v.total ? v.total() : v;
-        }
-        return t;
-    }
-    // decrement the count for the given category
-    decrement(slotName, amount) {
-        if (!amount) {
-            amount = 1;
-        }
-        slotName = slotName ? slotName.toString() : 'default';
-        if (this.categories[slotName]) {
-            this.categories[slotName] = Math.max(0, this.categories[slotName] - amount);
-            return this.categories[slotName];
-        }
-        return 0;
-    }
-    // increment the count for the given category
-    increment(slotName, amount) {
-        if (!amount) {
-            amount = 1;
-        }
-        slotName = slotName ? slotName.toString() : 'default';
-        this.categories[slotName] = (this.categories[slotName] || 0) + amount;
-        return this.categories[slotName];
-    }
-    // get the value of the given category.  may be a number or a
-    // frequency table.
-    get(slotName) {
-        return this.categories[slotName] || 0;
-    }
-    // get a given category as a frequency table
-    getNested(path) {
-        if (typeof path === 'string') {
-            path = path.split('/');
-        }
-        if (path.length === 0) {
-            return this;
-        }
-        const slotName = path[0].toString();
-        let slot = this.categories[slotName];
-        if (!slot || !slot.categories) {
-            this.categories[slotName] = new NestedFrequencyTable(slot ? { default: slot + 0 } : {});
-        }
-        slot = this.categories[slotName];
-        if (path.length > 1) {
-            return slot.getNested(path.slice(1));
-        }
-        return slot;
-    }
-    toString() {
-        return this.total()
-            .toPrecision(6)
-            .toString()
-            .replace(/\.?0+$/, '');
-    }
-    valueOf() {
-        return this.total();
-    }
-    // iterate through the categories and counts, call like:
-    //
-    //   tbl.forEach( function( count, categoryName ) {
-    //      // do something
-    //   }, this );
-    //
-    forEach(func, ctx) {
-        if (ctx) {
-            for (const slotName in this.categories) {
-                func.call(ctx, this.categories[slotName], slotName);
-            }
-        }
-        else {
-            for (const slotName in this.categories) {
-                func(this.categories[slotName], slotName);
-            }
-        }
-    }
-}
-exports.default = NestedFrequencyTable;
-//# sourceMappingURL=NestedFrequencyTable.js.map

package/dist/NestedFrequencyTable.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"NestedFrequencyTable.js","sourceRoot":"","sources":["../src/NestedFrequencyTable.ts"],"names":[],"mappings":";;AAAA,uDAAuD;AACvD,iDAAiD;AACjD,sDAAsD;AACtD,MAAqB,oBAAoB;IAGvC,YAAY,WAAW,GAAG,EAAE;QAC1B,IAAI,CAAC,UAAU,GAAG,EAAE,GAAG,WAAW,EAAE,CAAA;IACtC,CAAC;IAED,yCAAyC;IACzC,KAAK;QACH,+BAA+B;QAC/B,IAAI,CAAC,GAAG,CAAC,CAAA;QAET,KAAK,MAAM,CAAC,IAAI,IAAI,CAAC,UAAU,EAAE;YAC/B,MAAM,CAAC,GAAG,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,CAAA;YAC5B,CAAC,IAAI,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,KAAK,EAAE,CAAC,CAAC,CAAC,CAAC,CAAA;SAC7B;QAED,OAAO,CAAC,CAAA;IACV,CAAC;IAED,6CAA6C;IAC7C,SAAS,CAAC,QAAgB,EAAE,MAAc;QACxC,IAAI,CAAC,MAAM,EAAE;YACX,MAAM,GAAG,CAAC,CAAA;SACX;QAED,QAAQ,GAAG,QAAQ,CAAC,CAAC,CAAC,QAAQ,CAAC,QAAQ,EAAE,CAAC,CAAC,CAAC,SAAS,CAAA;QAErD,IAAI,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,EAAE;YAC7B,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,GAAG,IAAI,CAAC,GAAG,CAClC,CAAC,EACD,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,GAAG,MAAM,CACnC,CAAA;YACD,OAAO,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,CAAA;SACjC;QACD,OAAO,CAAC,CAAA;IACV,CAAC;IAED,6CAA6C;IAC7C,SAAS,CAAC,QAAgB,EAAE,MAAc;QACxC,IAAI,CAAC,MAAM,EAAE;YACX,MAAM,GAAG,CAAC,CAAA;SACX;QAED,QAAQ,GAAG,QAAQ,CAAC,CAAC,CAAC,QAAQ,CAAC,QAAQ,EAAE,CAAC,CAAC,CAAC,SAAS,CAAA;QAErD,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,GAAG,CAAC,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,GAAG,MAAM,CAAA;QACrE,OAAO,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,CAAA;IAClC,CAAC;IAED,6DAA6D;IAC7D,mBAAmB;IACnB,GAAG,CAAC,QAAgB;QAClB,OAAO,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAA;IACvC,CAAC;IAED,4CAA4C;IAC5C,SAAS,CAAC,IAAuB;QAC/B,IAAI,OAAO,IAAI,KAAK,QAAQ,EAAE;YAC5B,IAAI,GAAG,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,CAAA;SACvB;QAED,IAAI,IAAI,CAAC,MAAM,KAAK,CAAC,EAAE;YACrB,OAAO,IAAI,CAAA;SACZ;QAED,MAAM,QAAQ,GAAG,IAAI,CAAC,CAAC,CAAC,CAAC,QAAQ,EAAE,CAAA;QACnC,IAAI,IAAI,GAAG,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,CAAA;QACpC,IAAI,CAAC,IAAI,IAAI,CAAC,IAAI,CAAC,UAAU,EAAE;YAC7B,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,GAAG,IAAI,oBAAoB,CAClD,IAAI,CAAC,CAAC,CAAC,EAAE,OAAO,EAAE,IAAI,GAAG,CAAC,EAAE,CAAC,CAAC,CAAC,EAAE,CAClC,CAAA;SACF;QACD,IAAI,GAAG,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,CAAA;QAEhC,IAAI,IAAI,CAAC,MAAM,GAAG,CAAC,EAAE;YACnB,OAAO,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAA;SACrC;QACD,OAAO,IAAI,CAAA;IACb,CAAC;IAED,QAAQ;QACN,OAAO,IAAI,CAAC,KAAK,EAAE;aAChB,WAAW,CAAC,CAAC,CAAC;aACd,QAAQ,EAAE;aACV,OAAO,CAAC,QAAQ,EAAE,EAAE,CAAC,CAAA;IAC1B,CAAC;IAED,OAAO;QACL,OAAO,IAAI,CAAC,KAAK,EAAE,CAAA;IACrB,CAAC;IAED,wDAAwD;IACxD,EAAE;IACF,mDAAmD;IACnD,uBAAuB;IACvB,eAAe;IACf,EAAE;IACF,OAAO,CAAC,IAAc,EAAE,GAAQ;QAC9B,IAAI,GAAG,EAAE;YACP,KAAK,MAAM,QAAQ,IAAI,IAAI,CAAC,UAAU,EAAE;gBACtC,IAAI,CAAC,IAAI,CAAC,GAAG,EAAE,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,EAAE,QAAQ,CAAC,CAAA;aACpD;SACF;aAAM;YACL,KAAK,MAAM,QAAQ,IAAI,IAAI,CAAC,UAAU,EAAE;gBACtC,IAAI,CAAC,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,EAAE,QAAQ,CAAC,CAAA;aAC1C;SACF;IACH,CAAC;CACF;AA7GD,uCA6GC"}

package/esm/NestedFrequencyTable.d.ts

@@ -1,14 +0,0 @@
-export default class NestedFrequencyTable {
-    categories: {
-        [key: string]: any;
-    };
-    constructor(initialData?: {});
-    total(): number;
-    decrement(slotName: string, amount: number): any;
-    increment(slotName: string, amount: number): any;
-    get(slotName: string): any;
-    getNested(path: string | string[]): any;
-    toString(): string;
-    valueOf(): number;
-    forEach(func: Function, ctx: any): void;
-}

package/esm/NestedFrequencyTable.js

@@ -1,91 +0,0 @@
-/* eslint-disable @typescript-eslint/no-explicit-any */
-// see perf results on object.keys vs for-in loop
-// https://jsperf.com/object-keys-vs-hasownproperty/55
-export default class NestedFrequencyTable {
-    constructor(initialData = {}) {
-        this.categories = { ...initialData };
-    }
-    // get the sum of all the category counts
-    total() {
-        // calculate total if necessary
-        let t = 0;
-        for (const k in this.categories) {
-            const v = this.categories[k];
-            t += v.total ? v.total() : v;
-        }
-        return t;
-    }
-    // decrement the count for the given category
-    decrement(slotName, amount) {
-        if (!amount) {
-            amount = 1;
-        }
-        slotName = slotName ? slotName.toString() : 'default';
-        if (this.categories[slotName]) {
-            this.categories[slotName] = Math.max(0, this.categories[slotName] - amount);
-            return this.categories[slotName];
-        }
-        return 0;
-    }
-    // increment the count for the given category
-    increment(slotName, amount) {
-        if (!amount) {
-            amount = 1;
-        }
-        slotName = slotName ? slotName.toString() : 'default';
-        this.categories[slotName] = (this.categories[slotName] || 0) + amount;
-        return this.categories[slotName];
-    }
-    // get the value of the given category.  may be a number or a
-    // frequency table.
-    get(slotName) {
-        return this.categories[slotName] || 0;
-    }
-    // get a given category as a frequency table
-    getNested(path) {
-        if (typeof path === 'string') {
-            path = path.split('/');
-        }
-        if (path.length === 0) {
-            return this;
-        }
-        const slotName = path[0].toString();
-        let slot = this.categories[slotName];
-        if (!slot || !slot.categories) {
-            this.categories[slotName] = new NestedFrequencyTable(slot ? { default: slot + 0 } : {});
-        }
-        slot = this.categories[slotName];
-        if (path.length > 1) {
-            return slot.getNested(path.slice(1));
-        }
-        return slot;
-    }
-    toString() {
-        return this.total()
-            .toPrecision(6)
-            .toString()
-            .replace(/\.?0+$/, '');
-    }
-    valueOf() {
-        return this.total();
-    }
-    // iterate through the categories and counts, call like:
-    //
-    //   tbl.forEach( function( count, categoryName ) {
-    //      // do something
-    //   }, this );
-    //
-    forEach(func, ctx) {
-        if (ctx) {
-            for (const slotName in this.categories) {
-                func.call(ctx, this.categories[slotName], slotName);
-            }
-        }
-        else {
-            for (const slotName in this.categories) {
-                func(this.categories[slotName], slotName);
-            }
-        }
-    }
-}
-//# sourceMappingURL=NestedFrequencyTable.js.map

package/esm/NestedFrequencyTable.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"NestedFrequencyTable.js","sourceRoot":"","sources":["../src/NestedFrequencyTable.ts"],"names":[],"mappings":"AAAA,uDAAuD;AACvD,iDAAiD;AACjD,sDAAsD;AACtD,MAAM,CAAC,OAAO,OAAO,oBAAoB;IAGvC,YAAY,WAAW,GAAG,EAAE;QAC1B,IAAI,CAAC,UAAU,GAAG,EAAE,GAAG,WAAW,EAAE,CAAA;IACtC,CAAC;IAED,yCAAyC;IACzC,KAAK;QACH,+BAA+B;QAC/B,IAAI,CAAC,GAAG,CAAC,CAAA;QAET,KAAK,MAAM,CAAC,IAAI,IAAI,CAAC,UAAU,EAAE;YAC/B,MAAM,CAAC,GAAG,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,CAAA;YAC5B,CAAC,IAAI,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,KAAK,EAAE,CAAC,CAAC,CAAC,CAAC,CAAA;SAC7B;QAED,OAAO,CAAC,CAAA;IACV,CAAC;IAED,6CAA6C;IAC7C,SAAS,CAAC,QAAgB,EAAE,MAAc;QACxC,IAAI,CAAC,MAAM,EAAE;YACX,MAAM,GAAG,CAAC,CAAA;SACX;QAED,QAAQ,GAAG,QAAQ,CAAC,CAAC,CAAC,QAAQ,CAAC,QAAQ,EAAE,CAAC,CAAC,CAAC,SAAS,CAAA;QAErD,IAAI,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,EAAE;YAC7B,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,GAAG,IAAI,CAAC,GAAG,CAClC,CAAC,EACD,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,GAAG,MAAM,CACnC,CAAA;YACD,OAAO,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,CAAA;SACjC;QACD,OAAO,CAAC,CAAA;IACV,CAAC;IAED,6CAA6C;IAC7C,SAAS,CAAC,QAAgB,EAAE,MAAc;QACxC,IAAI,CAAC,MAAM,EAAE;YACX,MAAM,GAAG,CAAC,CAAA;SACX;QAED,QAAQ,GAAG,QAAQ,CAAC,CAAC,CAAC,QAAQ,CAAC,QAAQ,EAAE,CAAC,CAAC,CAAC,SAAS,CAAA;QAErD,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,GAAG,CAAC,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,GAAG,MAAM,CAAA;QACrE,OAAO,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,CAAA;IAClC,CAAC;IAED,6DAA6D;IAC7D,mBAAmB;IACnB,GAAG,CAAC,QAAgB;QAClB,OAAO,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAA;IACvC,CAAC;IAED,4CAA4C;IAC5C,SAAS,CAAC,IAAuB;QAC/B,IAAI,OAAO,IAAI,KAAK,QAAQ,EAAE;YAC5B,IAAI,GAAG,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,CAAA;SACvB;QAED,IAAI,IAAI,CAAC,MAAM,KAAK,CAAC,EAAE;YACrB,OAAO,IAAI,CAAA;SACZ;QAED,MAAM,QAAQ,GAAG,IAAI,CAAC,CAAC,CAAC,CAAC,QAAQ,EAAE,CAAA;QACnC,IAAI,IAAI,GAAG,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,CAAA;QACpC,IAAI,CAAC,IAAI,IAAI,CAAC,IAAI,CAAC,UAAU,EAAE;YAC7B,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,GAAG,IAAI,oBAAoB,CAClD,IAAI,CAAC,CAAC,CAAC,EAAE,OAAO,EAAE,IAAI,GAAG,CAAC,EAAE,CAAC,CAAC,CAAC,EAAE,CAClC,CAAA;SACF;QACD,IAAI,GAAG,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,CAAA;QAEhC,IAAI,IAAI,CAAC,MAAM,GAAG,CAAC,EAAE;YACnB,OAAO,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAA;SACrC;QACD,OAAO,IAAI,CAAA;IACb,CAAC;IAED,QAAQ;QACN,OAAO,IAAI,CAAC,KAAK,EAAE;aAChB,WAAW,CAAC,CAAC,CAAC;aACd,QAAQ,EAAE;aACV,OAAO,CAAC,QAAQ,EAAE,EAAE,CAAC,CAAA;IAC1B,CAAC;IAED,OAAO;QACL,OAAO,IAAI,CAAC,KAAK,EAAE,CAAA;IACrB,CAAC;IAED,wDAAwD;IACxD,EAAE;IACF,mDAAmD;IACnD,uBAAuB;IACvB,eAAe;IACf,EAAE;IACF,OAAO,CAAC,IAAc,EAAE,GAAQ;QAC9B,IAAI,GAAG,EAAE;YACP,KAAK,MAAM,QAAQ,IAAI,IAAI,CAAC,UAAU,EAAE;gBACtC,IAAI,CAAC,IAAI,CAAC,GAAG,EAAE,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,EAAE,QAAQ,CAAC,CAAA;aACpD;SACF;aAAM;YACL,KAAK,MAAM,QAAQ,IAAI,IAAI,CAAC,UAAU,EAAE;gBACtC,IAAI,CAAC,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,EAAE,QAAQ,CAAC,CAAA;aAC1C;SACF;IACH,CAAC;CACF"}

package/src/NestedFrequencyTable.ts

@@ -1,113 +0,0 @@
-/* eslint-disable @typescript-eslint/no-explicit-any */
-// see perf results on object.keys vs for-in loop
-// https://jsperf.com/object-keys-vs-hasownproperty/55
-export default class NestedFrequencyTable {
-  public categories: { [key: string]: any }
-
-  constructor(initialData = {}) {
-    this.categories = { ...initialData }
-  }
-
-  // get the sum of all the category counts
-  total() {
-    // calculate total if necessary
-    let t = 0
-
-    for (const k in this.categories) {
-      const v = this.categories[k]
-      t += v.total ? v.total() : v
-    }
-
-    return t
-  }
-
-  // decrement the count for the given category
-  decrement(slotName: string, amount: number) {
-    if (!amount) {
-      amount = 1
-    }
-
-    slotName = slotName ? slotName.toString() : 'default'
-
-    if (this.categories[slotName]) {
-      this.categories[slotName] = Math.max(
-        0,
-        this.categories[slotName] - amount,
-      )
-      return this.categories[slotName]
-    }
-    return 0
-  }
-
-  // increment the count for the given category
-  increment(slotName: string, amount: number) {
-    if (!amount) {
-      amount = 1
-    }
-
-    slotName = slotName ? slotName.toString() : 'default'
-
-    this.categories[slotName] = (this.categories[slotName] || 0) + amount
-    return this.categories[slotName]
-  }
-
-  // get the value of the given category.  may be a number or a
-  // frequency table.
-  get(slotName: string) {
-    return this.categories[slotName] || 0
-  }
-
-  // get a given category as a frequency table
-  getNested(path: string | string[]) {
-    if (typeof path === 'string') {
-      path = path.split('/')
-    }
-
-    if (path.length === 0) {
-      return this
-    }
-
-    const slotName = path[0].toString()
-    let slot = this.categories[slotName]
-    if (!slot || !slot.categories) {
-      this.categories[slotName] = new NestedFrequencyTable(
-        slot ? { default: slot + 0 } : {},
-      )
-    }
-    slot = this.categories[slotName]
-
-    if (path.length > 1) {
-      return slot.getNested(path.slice(1))
-    }
-    return slot
-  }
-
-  toString() {
-    return this.total()
-      .toPrecision(6)
-      .toString()
-      .replace(/\.?0+$/, '')
-  }
-
-  valueOf() {
-    return this.total()
-  }
-
-  // iterate through the categories and counts, call like:
-  //
-  //   tbl.forEach( function( count, categoryName ) {
-  //      // do something
-  //   }, this );
-  //
-  forEach(func: Function, ctx: any) {
-    if (ctx) {
-      for (const slotName in this.categories) {
-        func.call(ctx, this.categories[slotName], slotName)
-      }
-    } else {
-      for (const slotName in this.categories) {
-        func(this.categories[slotName], slotName)
-      }
-    }
-  }
-}