@jbrowse/plugin-alignments 2.4.0 → 2.4.2

package/src/NestedFrequencyTable.ts

@@ -1,121 +0,0 @@
-/* eslint-disable @typescript-eslint/no-explicit-any */
-// see perf results on object.keys vs for-in loop
-// https://jsperf.com/object-keys-vs-hasownproperty/55
-export default class NestedFrequencyTable {
-  public categories: { [key: string]: any }
-
-  constructor(initialData = {}) {
-    this.categories = { ...initialData }
-  }
-
-  // get the sum of all the category counts
-  total() {
-    // calculate total if necessary
-    let t = 0
-
-    for (const k in this.categories) {
-      const v = this.categories[k]
-      t += v.total ? v.total() : v
-    }
-
-    return t
-  }
-
-  // decrement the count for the given category
-  decrement(slotName: string, amount: number) {
-    if (!amount) {
-      amount = 1
-    }
-
-    if (!slotName) {
-      slotName = 'default'
-    } else {
-      slotName = slotName.toString()
-    }
-
-    if (this.categories[slotName]) {
-      this.categories[slotName] = Math.max(
-        0,
-        this.categories[slotName] - amount,
-      )
-      return this.categories[slotName]
-    }
-    return 0
-  }
-
-  // increment the count for the given category
-  increment(slotName: string, amount: number) {
-    if (!amount) {
-      amount = 1
-    }
-
-    if (!slotName) {
-      slotName = 'default'
-    } else {
-      slotName = slotName.toString()
-    }
-
-    this.categories[slotName] = (this.categories[slotName] || 0) + amount
-    return this.categories[slotName]
-  }
-
-  // get the value of the given category.  may be a number or a
-  // frequency table.
-  get(slotName: string) {
-    return this.categories[slotName] || 0
-  }
-
-  // get a given category as a frequency table
-  getNested(path: string | string[]) {
-    if (typeof path === 'string') {
-      path = path.split('/')
-    }
-
-    if (!path.length) {
-      return this
-    }
-
-    const slotName = path[0].toString()
-    let slot = this.categories[slotName]
-    if (!slot || !slot.categories) {
-      this.categories[slotName] = new NestedFrequencyTable(
-        slot ? { default: slot + 0 } : {},
-      )
-    }
-    slot = this.categories[slotName]
-
-    if (path.length > 1) {
-      return slot.getNested(path.slice(1))
-    }
-    return slot
-  }
-
-  toString() {
-    return this.total()
-      .toPrecision(6)
-      .toString()
-      .replace(/\.?0+$/, '')
-  }
-
-  valueOf() {
-    return this.total()
-  }
-
-  // iterate through the categories and counts, call like:
-  //
-  //   tbl.forEach( function( count, categoryName ) {
-  //      // do something
-  //   }, this );
-  //
-  forEach(func: Function, ctx: any) {
-    if (ctx) {
-      for (const slotName in this.categories) {
-        func.call(ctx, this.categories[slotName], slotName)
-      }
-    } else {
-      for (const slotName in this.categories) {
-        func(this.categories[slotName], slotName)
-      }
-    }
-  }
-}