@jbrowse/plugin-alignments 2.3.4 → 2.4.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BamAdapter/BamAdapter.js +2 -2
- package/dist/BamAdapter/BamAdapter.js.map +1 -1
- package/dist/BamAdapter/BamSlightlyLazyFeature.js +2 -2
- package/dist/BamAdapter/BamSlightlyLazyFeature.js.map +1 -1
- package/dist/CramAdapter/CramAdapter.js +2 -2
- package/dist/CramAdapter/CramAdapter.js.map +1 -1
- package/dist/CramAdapter/CramSlightlyLazyFeature.js +2 -2
- package/dist/CramAdapter/CramSlightlyLazyFeature.js.map +1 -1
- package/dist/CramAdapter/util.js +10 -10
- package/dist/CramAdapter/util.js.map +1 -1
- package/dist/LinearAlignmentsDisplay/components/AlignmentsDisplay.js +2 -2
- package/dist/LinearAlignmentsDisplay/components/AlignmentsDisplay.js.map +1 -1
- package/dist/LinearAlignmentsDisplay/models/configSchema.js +7 -0
- package/dist/LinearAlignmentsDisplay/models/configSchema.js.map +1 -1
- package/dist/LinearAlignmentsDisplay/models/model.d.ts +21 -5
- package/dist/LinearAlignmentsDisplay/models/model.js +22 -6
- package/dist/LinearAlignmentsDisplay/models/model.js.map +1 -1
- package/dist/LinearPileupDisplay/index.d.ts +2 -3
- package/dist/LinearPileupDisplay/index.js +4 -2
- package/dist/LinearPileupDisplay/index.js.map +1 -1
- package/dist/LinearPileupDisplay/model.d.ts +70 -9
- package/dist/LinearPileupDisplay/model.js +4 -4
- package/dist/LinearPileupDisplay/model.js.map +1 -1
- package/dist/LinearReadArcsDisplay/components/ReactComponent.js +14 -11
- package/dist/LinearReadArcsDisplay/components/ReactComponent.js.map +1 -1
- package/dist/LinearReadArcsDisplay/model.d.ts +77 -28
- package/dist/LinearReadArcsDisplay/model.js +16 -4
- package/dist/LinearReadArcsDisplay/model.js.map +1 -1
- package/dist/LinearReadCloudDisplay/model.d.ts +71 -19
- package/dist/LinearReadCloudDisplay/model.js +15 -3
- package/dist/LinearReadCloudDisplay/model.js.map +1 -1
- package/dist/LinearSNPCoverageDisplay/models/model.d.ts +8 -13
- package/dist/MismatchParser/index.js +4 -6
- package/dist/MismatchParser/index.js.map +1 -1
- package/dist/NestedFrequencyTable.js +3 -13
- package/dist/NestedFrequencyTable.js.map +1 -1
- package/dist/PileupRPC/rpcMethods.d.ts +3 -4
- package/dist/PileupRPC/rpcMethods.js +6 -6
- package/dist/PileupRPC/rpcMethods.js.map +1 -1
- package/dist/PileupRenderer/PileupRenderer.d.ts +6 -4
- package/dist/PileupRenderer/PileupRenderer.js +32 -38
- package/dist/PileupRenderer/PileupRenderer.js.map +1 -1
- package/dist/PileupRenderer/components/PileupRendering.js +2 -2
- package/dist/PileupRenderer/components/PileupRendering.js.map +1 -1
- package/dist/PileupRenderer/configSchema.js +1 -1
- package/dist/PileupRenderer/configSchema.js.map +1 -1
- package/dist/PileupRenderer/sortUtil.js +5 -4
- package/dist/PileupRenderer/sortUtil.js.map +1 -1
- package/dist/SNPCoverageRenderer/SNPCoverageRenderer.js +10 -7
- package/dist/SNPCoverageRenderer/SNPCoverageRenderer.js.map +1 -1
- package/dist/index.d.ts +3 -5
- package/dist/index.js +6 -6
- package/dist/index.js.map +1 -1
- package/esm/BamAdapter/BamAdapter.js +2 -2
- package/esm/BamAdapter/BamAdapter.js.map +1 -1
- package/esm/BamAdapter/BamSlightlyLazyFeature.js +2 -2
- package/esm/BamAdapter/BamSlightlyLazyFeature.js.map +1 -1
- package/esm/CramAdapter/CramAdapter.js +2 -2
- package/esm/CramAdapter/CramAdapter.js.map +1 -1
- package/esm/CramAdapter/CramSlightlyLazyFeature.js +2 -2
- package/esm/CramAdapter/CramSlightlyLazyFeature.js.map +1 -1
- package/esm/CramAdapter/util.js +10 -10
- package/esm/CramAdapter/util.js.map +1 -1
- package/esm/LinearAlignmentsDisplay/components/AlignmentsDisplay.js +2 -2
- package/esm/LinearAlignmentsDisplay/components/AlignmentsDisplay.js.map +1 -1
- package/esm/LinearAlignmentsDisplay/models/configSchema.js +7 -0
- package/esm/LinearAlignmentsDisplay/models/configSchema.js.map +1 -1
- package/esm/LinearAlignmentsDisplay/models/model.d.ts +21 -5
- package/esm/LinearAlignmentsDisplay/models/model.js +22 -6
- package/esm/LinearAlignmentsDisplay/models/model.js.map +1 -1
- package/esm/LinearPileupDisplay/index.d.ts +2 -3
- package/esm/LinearPileupDisplay/index.js +2 -1
- package/esm/LinearPileupDisplay/index.js.map +1 -1
- package/esm/LinearPileupDisplay/model.d.ts +70 -9
- package/esm/LinearPileupDisplay/model.js +4 -4
- package/esm/LinearPileupDisplay/model.js.map +1 -1
- package/esm/LinearReadArcsDisplay/components/ReactComponent.js +14 -11
- package/esm/LinearReadArcsDisplay/components/ReactComponent.js.map +1 -1
- package/esm/LinearReadArcsDisplay/model.d.ts +77 -28
- package/esm/LinearReadArcsDisplay/model.js +16 -4
- package/esm/LinearReadArcsDisplay/model.js.map +1 -1
- package/esm/LinearReadCloudDisplay/model.d.ts +71 -19
- package/esm/LinearReadCloudDisplay/model.js +15 -3
- package/esm/LinearReadCloudDisplay/model.js.map +1 -1
- package/esm/LinearSNPCoverageDisplay/models/model.d.ts +8 -13
- package/esm/MismatchParser/index.js +4 -6
- package/esm/MismatchParser/index.js.map +1 -1
- package/esm/NestedFrequencyTable.js +3 -13
- package/esm/NestedFrequencyTable.js.map +1 -1
- package/esm/PileupRPC/rpcMethods.d.ts +3 -4
- package/esm/PileupRPC/rpcMethods.js +3 -4
- package/esm/PileupRPC/rpcMethods.js.map +1 -1
- package/esm/PileupRenderer/PileupRenderer.d.ts +6 -4
- package/esm/PileupRenderer/PileupRenderer.js +32 -38
- package/esm/PileupRenderer/PileupRenderer.js.map +1 -1
- package/esm/PileupRenderer/components/PileupRendering.js +2 -2
- package/esm/PileupRenderer/components/PileupRendering.js.map +1 -1
- package/esm/PileupRenderer/configSchema.js +1 -1
- package/esm/PileupRenderer/configSchema.js.map +1 -1
- package/esm/PileupRenderer/sortUtil.js +5 -4
- package/esm/PileupRenderer/sortUtil.js.map +1 -1
- package/esm/SNPCoverageRenderer/SNPCoverageRenderer.js +10 -7
- package/esm/SNPCoverageRenderer/SNPCoverageRenderer.js.map +1 -1
- package/esm/index.d.ts +3 -5
- package/esm/index.js +3 -3
- package/esm/index.js.map +1 -1
- package/package.json +2 -2
- package/src/AlignmentsFeatureDetail/__snapshots__/index.test.tsx.snap +13 -13
- package/src/AlignmentsFeatureDetail/index.test.tsx +1 -1
- package/src/BamAdapter/BamAdapter.ts +2 -2
- package/src/BamAdapter/BamSlightlyLazyFeature.ts +2 -2
- package/src/CramAdapter/CramAdapter.ts +2 -2
- package/src/CramAdapter/CramSlightlyLazyFeature.ts +2 -2
- package/src/CramAdapter/util.ts +10 -10
- package/src/LinearAlignmentsDisplay/components/AlignmentsDisplay.tsx +2 -2
- package/src/LinearAlignmentsDisplay/models/configSchema.test.ts +1 -1
- package/src/LinearAlignmentsDisplay/models/configSchema.ts +8 -0
- package/src/LinearAlignmentsDisplay/models/model.tsx +21 -6
- package/src/LinearPileupDisplay/index.ts +2 -4
- package/src/LinearPileupDisplay/model.ts +4 -4
- package/src/LinearReadArcsDisplay/components/ReactComponent.tsx +14 -12
- package/src/LinearReadArcsDisplay/model.tsx +23 -5
- package/src/LinearReadCloudDisplay/model.tsx +23 -7
- package/src/LinearSNPCoverageDisplay/models/configSchema.test.ts +1 -1
- package/src/MismatchParser/index.ts +6 -8
- package/src/NestedFrequencyTable.ts +3 -11
- package/src/PileupRPC/rpcMethods.ts +3 -9
- package/src/PileupRenderer/PileupRenderer.ts +49 -65
- package/src/PileupRenderer/components/PileupRendering.tsx +2 -2
- package/src/PileupRenderer/configSchema.ts +1 -1
- package/src/PileupRenderer/sortUtil.ts +5 -4
- package/src/SNPCoverageRenderer/SNPCoverageRenderer.ts +14 -13
- package/src/index.ts +5 -10
|
@@ -121,7 +121,7 @@ class BamAdapter extends BaseAdapter_1.BaseFeatureDataAdapter {
|
|
|
121
121
|
const trimEnd = Math.min(end - chunkStart, chunkEnd - chunkStart);
|
|
122
122
|
const trimLength = trimEnd - trimStart;
|
|
123
123
|
const chunkSeq = chunk.get('seq') || chunk.get('residues');
|
|
124
|
-
sequence += chunkSeq.
|
|
124
|
+
sequence += chunkSeq.slice(trimStart, trimStart + trimLength);
|
|
125
125
|
});
|
|
126
126
|
if (sequence.length !== end - start) {
|
|
127
127
|
throw new Error(`sequence fetch failed: fetching ${refName}:${(start - 1).toLocaleString()}-${end.toLocaleString()} returned ${sequence.length.toLocaleString()} bases, but should have returned ${(end - start).toLocaleString()}`);
|
|
@@ -164,7 +164,7 @@ class BamAdapter extends BaseAdapter_1.BaseFeatureDataAdapter {
|
|
|
164
164
|
async estimateRegionsStats(regions, opts) {
|
|
165
165
|
const { bam } = await this.configure();
|
|
166
166
|
// this is a method to avoid calling on htsget adapters
|
|
167
|
-
// @ts-
|
|
167
|
+
// @ts-expect-error
|
|
168
168
|
if (bam.index.filehandle !== '?') {
|
|
169
169
|
const bytes = await (0, util_1.bytesForRegions)(regions, bam);
|
|
170
170
|
const fetchSizeLimit = this.getConf('fetchSizeLimit');
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"BamAdapter.js","sourceRoot":"","sources":["../../src/BamAdapter/BamAdapter.ts"],"names":[],"mappings":";;;;;AAAA,mCAAmC;AACnC,yEAGgD;AAEhD,6CAA2E;AAC3E,8CAAoD;AACpD,kDAA0D;AAC1D,8CAAwC;AAExC,SAAS;AACT,sFAA6D;AAC7D,+BAAqC;AAOrC,MAAqB,UAAW,SAAQ,oCAAsB;IAS5D,iEAAiE;IACjE,oEAAoE;IAC1D,KAAK,CAAC,YAAY;QAC1B,MAAM,WAAW,GAAG,IAAI,CAAC,OAAO,CAAC,aAAa,CAAC,CAAA;QAC/C,MAAM,QAAQ,GAAG,IAAI,CAAC,OAAO,CAAC,CAAC,OAAO,EAAE,UAAU,CAAC,CAAC,CAAA;QACpD,MAAM,SAAS,GAAG,IAAI,CAAC,OAAO,CAAC,CAAC,OAAO,EAAE,WAAW,CAAC,CAAC,CAAA;QACtD,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,GAAG,GAAG,SAAS,KAAK,KAAK,CAAA;QAC/B,MAAM,GAAG,GAAG,IAAI,aAAO,CAAC;YACtB,aAAa,EAAE,IAAA,iBAAY,EAAC,WAAW,EAAE,EAAE,CAAC;YAC5C,aAAa,EAAE,GAAG,CAAC,CAAC,CAAC,IAAA,iBAAY,EAAC,QAAQ,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,SAAS;YAC3D,aAAa,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,IAAA,iBAAY,EAAC,QAAQ,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,SAAS;YAE5D,8DAA8D;YAC9D,gEAAgE;YAChE,mEAAmE;YACnE,cAAc,EAAE,QAAQ;YACxB,cAAc,EAAE,QAAQ;YACxB,eAAe,EAAE,QAAQ;SAC1B,CAAC,CAAA;QAEF,MAAM,aAAa,GAAG,IAAI,CAAC,OAAO,CAAC,iBAAiB,CAAC,CAAA;QACrD,IAAI,aAAa,IAAI,IAAI,CAAC,aAAa,EAAE;YACvC,MAAM,EAAE,WAAW,EAAE,GAAG,MAAM,IAAI,CAAC,aAAa,CAAC,aAAa,CAAC,CAAA;YAC/D,OAAO;gBACL,GAAG;gBACH,eAAe,EAAE,WAAqC;aACvD,CAAA;SACF;aAAM;YACL,OAAO,EAAE,GAAG,EAAE,CAAA;SACf;IACH,CAAC;IAES,KAAK,CAAC,SAAS;QACvB,IAAI,CAAC,IAAI,CAAC,UAAU,EAAE;YACpB,IAAI,CAAC,UAAU,GAAG,IAAI,CAAC,YAAY,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE;gBAC9C,IAAI,CAAC,UAAU,GAAG,SAAS,CAAA;gBAC3B,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;SACH;QACD,OAAO,IAAI,CAAC,UAAU,CAAA;IACxB,CAAC;IAED,KAAK,CAAC,SAAS,CAAC,IAAkB;QAChC,MAAM,EAAE,GAAG,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACtC,OAAO,GAAG,CAAC,aAAa,CAAC,IAAI,CAAC,CAAA;IAChC,CAAC;IAEO,KAAK,CAAC,QAAQ,CAAC,IAAkB;QACvC,MAAM,EAAE,cAAc,GAAG,GAAG,EAAE,GAAE,CAAC,EAAE,GAAG,IAAI,IAAI,EAAE,CAAA;QAChD,MAAM,EAAE,GAAG,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACtC,IAAI,CAAC,SAAS,GAAG,MAAM,IAAA,mBAAY,EACjC,mBAAmB,EACnB,cAAc,EACd,KAAK,IAAI,EAAE;YACT,MAAM,SAAS,GAAG,MAAM,GAAG,CAAC,SAAS,CAAC,IAAI,CAAC,CAAA;YAE3C,oDAAoD;YACpD,+CAA+C;YAC/C,MAAM,QAAQ,GAAa,EAAE,CAAA;YAC7B,MAAM,QAAQ,GAA2B,EAAE,CAAA;YAC3C,SAAS;iBACN,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,KAAK,IAAI,CAAC;iBAC3B,OAAO,CAAC,CAAC,MAAM,EAAE,KAAK,EAAE,EAAE;gBACzB,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE;oBACzB,IAAI,IAAI,CAAC,GAAG,KAAK,IAAI,EAAE;wBACrB,uBAAuB;wBACvB,MAAM,OAAO,GAAG,IAAI,CAAC,KAAK,CAAA;wBAC1B,QAAQ,CAAC,OAAO,CAAC,GAAG,KAAK,CAAA;wBACzB,QAAQ,CAAC,KAAK,CAAC,GAAG,OAAO,CAAA;qBAC1B;gBACH,CAAC,CAAC,CAAA;YACJ,CAAC,CAAC,CAAA;YAEJ,OAAO,EAAE,QAAQ,EAAE,QAAQ,EAAE,CAAA;QAC/B,CAAC,CACF,CAAA;QACD,OAAO,IAAI,CAAC,SAAS,CAAA;IACvB,CAAC;IAED,KAAK,CAAC,KAAK,CAAC,IAAkB;QAC5B,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE;YAChB,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE;gBAC1C,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;gBACvB,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;SACH;QACD,OAAO,IAAI,CAAC,MAAM,CAAA;IACpB,CAAC;IAED,KAAK,CAAC,WAAW,CAAC,IAAkB;QAClC,MAAM,EAAE,QAAQ,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;QAC3C,OAAO,QAAQ,CAAA;IACjB,CAAC;IAEO,KAAK,CAAC,QAAQ,CAAC,OAAe,EAAE,KAAa,EAAE,GAAW;QAChE,MAAM,EAAE,eAAe,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QAClD,MAAM,WAAW,GAAG,eAAe,CAAA;QACnC,IAAI,CAAC,WAAW,EAAE;YAChB,OAAO,SAAS,CAAA;SACjB;QACD,IAAI,CAAC,OAAO,EAAE;YACZ,OAAO,SAAS,CAAA;SACjB;QAED,MAAM,QAAQ,GAAG,WAAW,CAAC,WAAW,CAAC;YACvC,OAAO;YACP,KAAK;YACL,GAAG;YACH,YAAY,EAAE,EAAE;SACjB,CAAC,CAAA;QAEF,MAAM,SAAS,GAAG,MAAM,IAAA,qBAAc,EAAC,QAAQ,CAAC,IAAI,CAAC,IAAA,mBAAO,GAAE,CAAC,CAAC,CAAA;QAEhE,IAAI,QAAQ,GAAG,EAAE,CAAA;QACjB,SAAS;aACN,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;aAC/C,OAAO,CAAC,KAAK,CAAC,EAAE;YACf,MAAM,UAAU,GAAG,KAAK,CAAC,GAAG,CAAC,OAAO,CAAC,CAAA;YACrC,MAAM,QAAQ,GAAG,KAAK,CAAC,GAAG,CAAC,KAAK,CAAC,CAAA;YACjC,MAAM,SAAS,GAAG,IAAI,CAAC,GAAG,CAAC,KAAK,GAAG,UAAU,EAAE,CAAC,CAAC,CAAA;YACjD,MAAM,OAAO,GAAG,IAAI,CAAC,GAAG,CAAC,GAAG,GAAG,UAAU,EAAE,QAAQ,GAAG,UAAU,CAAC,CAAA;YACjE,MAAM,UAAU,GAAG,OAAO,GAAG,SAAS,CAAA;YACtC,MAAM,QAAQ,GAAG,KAAK,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,KAAK,CAAC,GAAG,CAAC,UAAU,CAAC,CAAA;YAC1D,QAAQ,IAAI,QAAQ,CAAC,
|
|
1
|
+
{"version":3,"file":"BamAdapter.js","sourceRoot":"","sources":["../../src/BamAdapter/BamAdapter.ts"],"names":[],"mappings":";;;;;AAAA,mCAAmC;AACnC,yEAGgD;AAEhD,6CAA2E;AAC3E,8CAAoD;AACpD,kDAA0D;AAC1D,8CAAwC;AAExC,SAAS;AACT,sFAA6D;AAC7D,+BAAqC;AAOrC,MAAqB,UAAW,SAAQ,oCAAsB;IAS5D,iEAAiE;IACjE,oEAAoE;IAC1D,KAAK,CAAC,YAAY;QAC1B,MAAM,WAAW,GAAG,IAAI,CAAC,OAAO,CAAC,aAAa,CAAC,CAAA;QAC/C,MAAM,QAAQ,GAAG,IAAI,CAAC,OAAO,CAAC,CAAC,OAAO,EAAE,UAAU,CAAC,CAAC,CAAA;QACpD,MAAM,SAAS,GAAG,IAAI,CAAC,OAAO,CAAC,CAAC,OAAO,EAAE,WAAW,CAAC,CAAC,CAAA;QACtD,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,GAAG,GAAG,SAAS,KAAK,KAAK,CAAA;QAC/B,MAAM,GAAG,GAAG,IAAI,aAAO,CAAC;YACtB,aAAa,EAAE,IAAA,iBAAY,EAAC,WAAW,EAAE,EAAE,CAAC;YAC5C,aAAa,EAAE,GAAG,CAAC,CAAC,CAAC,IAAA,iBAAY,EAAC,QAAQ,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,SAAS;YAC3D,aAAa,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,IAAA,iBAAY,EAAC,QAAQ,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,SAAS;YAE5D,8DAA8D;YAC9D,gEAAgE;YAChE,mEAAmE;YACnE,cAAc,EAAE,QAAQ;YACxB,cAAc,EAAE,QAAQ;YACxB,eAAe,EAAE,QAAQ;SAC1B,CAAC,CAAA;QAEF,MAAM,aAAa,GAAG,IAAI,CAAC,OAAO,CAAC,iBAAiB,CAAC,CAAA;QACrD,IAAI,aAAa,IAAI,IAAI,CAAC,aAAa,EAAE;YACvC,MAAM,EAAE,WAAW,EAAE,GAAG,MAAM,IAAI,CAAC,aAAa,CAAC,aAAa,CAAC,CAAA;YAC/D,OAAO;gBACL,GAAG;gBACH,eAAe,EAAE,WAAqC;aACvD,CAAA;SACF;aAAM;YACL,OAAO,EAAE,GAAG,EAAE,CAAA;SACf;IACH,CAAC;IAES,KAAK,CAAC,SAAS;QACvB,IAAI,CAAC,IAAI,CAAC,UAAU,EAAE;YACpB,IAAI,CAAC,UAAU,GAAG,IAAI,CAAC,YAAY,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE;gBAC9C,IAAI,CAAC,UAAU,GAAG,SAAS,CAAA;gBAC3B,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;SACH;QACD,OAAO,IAAI,CAAC,UAAU,CAAA;IACxB,CAAC;IAED,KAAK,CAAC,SAAS,CAAC,IAAkB;QAChC,MAAM,EAAE,GAAG,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACtC,OAAO,GAAG,CAAC,aAAa,CAAC,IAAI,CAAC,CAAA;IAChC,CAAC;IAEO,KAAK,CAAC,QAAQ,CAAC,IAAkB;QACvC,MAAM,EAAE,cAAc,GAAG,GAAG,EAAE,GAAE,CAAC,EAAE,GAAG,IAAI,IAAI,EAAE,CAAA;QAChD,MAAM,EAAE,GAAG,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACtC,IAAI,CAAC,SAAS,GAAG,MAAM,IAAA,mBAAY,EACjC,mBAAmB,EACnB,cAAc,EACd,KAAK,IAAI,EAAE;YACT,MAAM,SAAS,GAAG,MAAM,GAAG,CAAC,SAAS,CAAC,IAAI,CAAC,CAAA;YAE3C,oDAAoD;YACpD,+CAA+C;YAC/C,MAAM,QAAQ,GAAa,EAAE,CAAA;YAC7B,MAAM,QAAQ,GAA2B,EAAE,CAAA;YAC3C,SAAS;iBACN,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,KAAK,IAAI,CAAC;iBAC3B,OAAO,CAAC,CAAC,MAAM,EAAE,KAAK,EAAE,EAAE;gBACzB,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE;oBACzB,IAAI,IAAI,CAAC,GAAG,KAAK,IAAI,EAAE;wBACrB,uBAAuB;wBACvB,MAAM,OAAO,GAAG,IAAI,CAAC,KAAK,CAAA;wBAC1B,QAAQ,CAAC,OAAO,CAAC,GAAG,KAAK,CAAA;wBACzB,QAAQ,CAAC,KAAK,CAAC,GAAG,OAAO,CAAA;qBAC1B;gBACH,CAAC,CAAC,CAAA;YACJ,CAAC,CAAC,CAAA;YAEJ,OAAO,EAAE,QAAQ,EAAE,QAAQ,EAAE,CAAA;QAC/B,CAAC,CACF,CAAA;QACD,OAAO,IAAI,CAAC,SAAS,CAAA;IACvB,CAAC;IAED,KAAK,CAAC,KAAK,CAAC,IAAkB;QAC5B,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE;YAChB,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE;gBAC1C,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;gBACvB,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;SACH;QACD,OAAO,IAAI,CAAC,MAAM,CAAA;IACpB,CAAC;IAED,KAAK,CAAC,WAAW,CAAC,IAAkB;QAClC,MAAM,EAAE,QAAQ,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;QAC3C,OAAO,QAAQ,CAAA;IACjB,CAAC;IAEO,KAAK,CAAC,QAAQ,CAAC,OAAe,EAAE,KAAa,EAAE,GAAW;QAChE,MAAM,EAAE,eAAe,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QAClD,MAAM,WAAW,GAAG,eAAe,CAAA;QACnC,IAAI,CAAC,WAAW,EAAE;YAChB,OAAO,SAAS,CAAA;SACjB;QACD,IAAI,CAAC,OAAO,EAAE;YACZ,OAAO,SAAS,CAAA;SACjB;QAED,MAAM,QAAQ,GAAG,WAAW,CAAC,WAAW,CAAC;YACvC,OAAO;YACP,KAAK;YACL,GAAG;YACH,YAAY,EAAE,EAAE;SACjB,CAAC,CAAA;QAEF,MAAM,SAAS,GAAG,MAAM,IAAA,qBAAc,EAAC,QAAQ,CAAC,IAAI,CAAC,IAAA,mBAAO,GAAE,CAAC,CAAC,CAAA;QAEhE,IAAI,QAAQ,GAAG,EAAE,CAAA;QACjB,SAAS;aACN,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;aAC/C,OAAO,CAAC,KAAK,CAAC,EAAE;YACf,MAAM,UAAU,GAAG,KAAK,CAAC,GAAG,CAAC,OAAO,CAAC,CAAA;YACrC,MAAM,QAAQ,GAAG,KAAK,CAAC,GAAG,CAAC,KAAK,CAAC,CAAA;YACjC,MAAM,SAAS,GAAG,IAAI,CAAC,GAAG,CAAC,KAAK,GAAG,UAAU,EAAE,CAAC,CAAC,CAAA;YACjD,MAAM,OAAO,GAAG,IAAI,CAAC,GAAG,CAAC,GAAG,GAAG,UAAU,EAAE,QAAQ,GAAG,UAAU,CAAC,CAAA;YACjE,MAAM,UAAU,GAAG,OAAO,GAAG,SAAS,CAAA;YACtC,MAAM,QAAQ,GAAG,KAAK,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,KAAK,CAAC,GAAG,CAAC,UAAU,CAAC,CAAA;YAC1D,QAAQ,IAAI,QAAQ,CAAC,KAAK,CAAC,SAAS,EAAE,SAAS,GAAG,UAAU,CAAC,CAAA;QAC/D,CAAC,CAAC,CAAA;QAEJ,IAAI,QAAQ,CAAC,MAAM,KAAK,GAAG,GAAG,KAAK,EAAE;YACnC,MAAM,IAAI,KAAK,CACb,mCAAmC,OAAO,IAAI,CAC5C,KAAK,GAAG,CAAC,CACV,CAAC,cAAc,EAAE,IAAI,GAAG,CAAC,cAAc,EAAE,aAAa,QAAQ,CAAC,MAAM,CAAC,cAAc,EAAE,oCAAoC,CACzH,GAAG,GAAG,KAAK,CACZ,CAAC,cAAc,EAAE,EAAE,CACrB,CAAA;SACF;QACD,OAAO,QAAQ,CAAA;IACjB,CAAC;IAED,WAAW,CACT,MAA6C,EAC7C,IAOC;QAED,MAAM,EAAE,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE,eAAe,EAAE,GAAG,MAAM,CAAA;QACvD,MAAM,EAAE,MAAM,EAAE,QAAQ,EAAE,cAAc,GAAG,GAAG,EAAE,GAAE,CAAC,EAAE,GAAG,IAAI,IAAI,EAAE,CAAA;QAClE,OAAO,IAAA,uBAAgB,EAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;YAChD,MAAM,EAAE,GAAG,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;YACtC,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;YACtB,cAAc,CAAC,wBAAwB,CAAC,CAAA;YACxC,MAAM,OAAO,GAAG,MAAM,GAAG,CAAC,kBAAkB,CAAC,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE,IAAI,CAAC,CAAA;YAEvE,MAAM,EACJ,WAAW,GAAG,CAAC,EACf,WAAW,GAAG,CAAC,EACf,SAAS,EACT,QAAQ,GACT,GAAG,QAAQ,IAAI,EAAE,CAAA;YAElB,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE;gBAC5B,IAAI,GAAuB,CAAA;gBAC3B,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE;oBACrB,GAAG,GAAG,MAAM,IAAI,CAAC,QAAQ,CACvB,eAAe,IAAI,OAAO,EAC1B,MAAM,CAAC,GAAG,CAAC,OAAO,CAAC,EACnB,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,CAClB,CAAA;iBACF;gBAED,MAAM,KAAK,GAAG,MAAM,CAAC,KAAK,CAAA;gBAC1B,IACE,CAAC,CAAC,CAAC,KAAK,GAAG,WAAW,CAAC,KAAK,WAAW,IAAI,CAAC,CAAC,KAAK,GAAG,WAAW,CAAC,CAAC,EAClE;oBACA,SAAQ;iBACT;gBAED,IAAI,SAAS,EAAE;oBACb,MAAM,GAAG,GAAG,MAAM,CAAC,GAAG,CAAC,SAAS,CAAC,GAAG,CAAC,CAAA;oBACrC,IAAI,CAAC,CAAC,GAAG,KAAK,GAAG,CAAC,CAAC,CAAC,GAAG,KAAK,SAAS,CAAC,CAAC,CAAC,GAAG,KAAK,SAAS,CAAC,KAAK,CAAC,EAAE;wBAChE,SAAQ;qBACT;iBACF;gBAED,IAAI,QAAQ,IAAI,MAAM,CAAC,GAAG,CAAC,MAAM,CAAC,KAAK,QAAQ,EAAE;oBAC/C,SAAQ;iBACT;gBAED,QAAQ,CAAC,IAAI,CAAC,IAAI,gCAAsB,CAAC,MAAM,EAAE,IAAI,EAAE,GAAG,CAAC,CAAC,CAAA;aAC7D;YACD,cAAc,CAAC,EAAE,CAAC,CAAA;YAClB,QAAQ,CAAC,QAAQ,EAAE,CAAA;QACrB,CAAC,EAAE,MAAM,CAAC,CAAA;IACZ,CAAC;IAED,KAAK,CAAC,oBAAoB,CAAC,OAAiB,EAAE,IAAkB;QAC9D,MAAM,EAAE,GAAG,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACtC,uDAAuD;QACvD,mBAAmB;QACnB,IAAI,GAAG,CAAC,KAAK,CAAC,UAAU,KAAK,GAAG,EAAE;YAChC,MAAM,KAAK,GAAG,MAAM,IAAA,sBAAe,EAAC,OAAO,EAAE,GAAG,CAAC,CAAA;YACjD,MAAM,cAAc,GAAG,IAAI,CAAC,OAAO,CAAC,gBAAgB,CAAC,CAAA;YACrD,OAAO,EAAE,KAAK,EAAE,cAAc,EAAE,CAAA;SACjC;aAAM;YACL,OAAO,KAAK,CAAC,oBAAoB,CAAC,OAAO,EAAE,IAAI,CAAC,CAAA;SACjD;IACH,CAAC;IAED,aAAa,EAAC,gBAAgB,IAAS,CAAC;IAExC,2DAA2D;IAC3D,WAAW,CAAC,KAAa;;QACvB,OAAO,MAAA,IAAI,CAAC,SAAS,0CAAE,QAAQ,CAAC,KAAK,CAAC,CAAA;IACxC,CAAC;CACF;AApOD,6BAoOC"}
|
|
@@ -65,9 +65,9 @@ class BamSlightlyLazyFeature {
|
|
|
65
65
|
// eslint-disable-next-line @typescript-eslint/no-explicit-any
|
|
66
66
|
get(field) {
|
|
67
67
|
const methodName = `_get_${field}`;
|
|
68
|
-
// @ts-
|
|
68
|
+
// @ts-expect-error
|
|
69
69
|
if (this[methodName]) {
|
|
70
|
-
// @ts-
|
|
70
|
+
// @ts-expect-error
|
|
71
71
|
return this[methodName]();
|
|
72
72
|
}
|
|
73
73
|
return this.record.get(field);
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"BamSlightlyLazyFeature.js","sourceRoot":"","sources":["../../src/BamAdapter/BamSlightlyLazyFeature.ts"],"names":[],"mappings":";;AAOA,SAAS;AACT,sDAA0D;AAG1D,MAAqB,sBAAsB;IACzC,wEAAwE;IACxE,iFAAiF;IACjF,YACU,MAAiB,EACjB,OAAmB,EACnB,GAAY;QAFZ,WAAM,GAAN,MAAM,CAAW;QACjB,YAAO,GAAP,OAAO,CAAY;QACnB,QAAG,GAAH,GAAG,CAAS;IACnB,CAAC;IAEJ,SAAS;QACP,OAAO,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,MAAM,CAAC,CAAA;IAChC,CAAC;IAED,SAAS;QACP,OAAO,OAAO,CAAA;IAChB,CAAC;IAED,UAAU;QACR,OAAO,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,CAAA;IAC9B,CAAC;IAED,UAAU;QACR,OAAO,IAAI,CAAC,MAAM,CAAC,KAAK,CAAA;IAC1B,CAAC;IAED,WAAW;QACT,OAAO,IAAI,CAAC,MAAM,CAAC,qBAAqB,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;IACrD,CAAC;IAED,qBAAqB;QACnB,OAAO,IAAI,CAAC,MAAM,CAAC,QAAQ,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,kBAAkB,EAAE,CAAC,CAAC,CAAC,SAAS,CAAA;IAC9E,CAAC;IAED,aAAa;QACX,OAAO,IAAI,CAAC,MAAM,CAAC,QAAQ,EAAE;YAC3B,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,WAAW,CAAC,IAAI,CAAC,MAAM,CAAC,WAAW,EAAE,CAAC;YACrD,CAAC,CAAC,SAAS,CAAA;IACf,CAAC;IAED,aAAa;QACX,OAAO,IAAI,CAAC,MAAM,CAAC,QAAQ,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,SAAS,EAAE,CAAC,CAAC,CAAC,SAAS,CAAA;IACrE,CAAC;IAED,0BAA0B;QACxB,OAAO,IAAI,CAAC,MAAM,CAAC,QAAQ,EAAE;YAC3B,CAAC,CAAC,GAAG,IAAI,CAAC,OAAO,CAAC,WAAW,CAAC,IAAI,CAAC,MAAM,CAAC,WAAW,EAAE,CAAC,IACpD,IAAI,CAAC,MAAM,CAAC,SAAS,EAAE,GAAG,CAC5B,EAAE;YACJ,CAAC,CAAC,SAAS,CAAA;IACf,CAAC;IAED,QAAQ;QACN,OAAO,IAAI,CAAC,MAAM,CAAC,YAAY,EAAE,CAAA;IACnC,CAAC;IAED,OAAO;QACL,OAAO,IAAI,CAAC,MAAM,CAAC,OAAO,EAAE,CAAA;IAC9B,CAAC;IAED,GAAG,KAAI,CAAC;IAER,IAAI;QACF,MAAM,UAAU,GAAG,MAAM,CAAC,mBAAmB,CAC3C,sBAAsB,CAAC,SAAS,CACjC,CAAA;QAED,OAAO;YACL,GAAG,IAAI,GAAG,CACR,UAAU;iBACP,MAAM,CACL,IAAI,CAAC,EAAE,CACL,IAAI,CAAC,UAAU,CAAC,OAAO,CAAC;gBACxB,IAAI,KAAK,iBAAiB;gBAC1B,IAAI,KAAK,WAAW,CACvB;iBACA,GAAG,CAAC,UAAU,CAAC,EAAE,CAAC,UAAU,CAAC,OAAO,CAAC,OAAO,EAAE,EAAE,CAAC,CAAC;iBAClD,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,KAAK,EAAE,CAAC,CAC/B;SACF,CAAA;IACH,CAAC;IAED,EAAE;QACA,OAAO,GAAG,IAAI,CAAC,OAAO,CAAC,EAAE,IAAI,IAAI,CAAC,MAAM,CAAC,EAAE,EAAE,EAAE,CAAA;IACjD,CAAC;IAED,8DAA8D;IAC9D,GAAG,CAAC,KAAa;QACf,MAAM,UAAU,GAAG,QAAQ,KAAK,EAAE,CAAA;QAClC,
|
|
1
|
+
{"version":3,"file":"BamSlightlyLazyFeature.js","sourceRoot":"","sources":["../../src/BamAdapter/BamSlightlyLazyFeature.ts"],"names":[],"mappings":";;AAOA,SAAS;AACT,sDAA0D;AAG1D,MAAqB,sBAAsB;IACzC,wEAAwE;IACxE,iFAAiF;IACjF,YACU,MAAiB,EACjB,OAAmB,EACnB,GAAY;QAFZ,WAAM,GAAN,MAAM,CAAW;QACjB,YAAO,GAAP,OAAO,CAAY;QACnB,QAAG,GAAH,GAAG,CAAS;IACnB,CAAC;IAEJ,SAAS;QACP,OAAO,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,MAAM,CAAC,CAAA;IAChC,CAAC;IAED,SAAS;QACP,OAAO,OAAO,CAAA;IAChB,CAAC;IAED,UAAU;QACR,OAAO,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,CAAA;IAC9B,CAAC;IAED,UAAU;QACR,OAAO,IAAI,CAAC,MAAM,CAAC,KAAK,CAAA;IAC1B,CAAC;IAED,WAAW;QACT,OAAO,IAAI,CAAC,MAAM,CAAC,qBAAqB,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;IACrD,CAAC;IAED,qBAAqB;QACnB,OAAO,IAAI,CAAC,MAAM,CAAC,QAAQ,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,kBAAkB,EAAE,CAAC,CAAC,CAAC,SAAS,CAAA;IAC9E,CAAC;IAED,aAAa;QACX,OAAO,IAAI,CAAC,MAAM,CAAC,QAAQ,EAAE;YAC3B,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,WAAW,CAAC,IAAI,CAAC,MAAM,CAAC,WAAW,EAAE,CAAC;YACrD,CAAC,CAAC,SAAS,CAAA;IACf,CAAC;IAED,aAAa;QACX,OAAO,IAAI,CAAC,MAAM,CAAC,QAAQ,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,SAAS,EAAE,CAAC,CAAC,CAAC,SAAS,CAAA;IACrE,CAAC;IAED,0BAA0B;QACxB,OAAO,IAAI,CAAC,MAAM,CAAC,QAAQ,EAAE;YAC3B,CAAC,CAAC,GAAG,IAAI,CAAC,OAAO,CAAC,WAAW,CAAC,IAAI,CAAC,MAAM,CAAC,WAAW,EAAE,CAAC,IACpD,IAAI,CAAC,MAAM,CAAC,SAAS,EAAE,GAAG,CAC5B,EAAE;YACJ,CAAC,CAAC,SAAS,CAAA;IACf,CAAC;IAED,QAAQ;QACN,OAAO,IAAI,CAAC,MAAM,CAAC,YAAY,EAAE,CAAA;IACnC,CAAC;IAED,OAAO;QACL,OAAO,IAAI,CAAC,MAAM,CAAC,OAAO,EAAE,CAAA;IAC9B,CAAC;IAED,GAAG,KAAI,CAAC;IAER,IAAI;QACF,MAAM,UAAU,GAAG,MAAM,CAAC,mBAAmB,CAC3C,sBAAsB,CAAC,SAAS,CACjC,CAAA;QAED,OAAO;YACL,GAAG,IAAI,GAAG,CACR,UAAU;iBACP,MAAM,CACL,IAAI,CAAC,EAAE,CACL,IAAI,CAAC,UAAU,CAAC,OAAO,CAAC;gBACxB,IAAI,KAAK,iBAAiB;gBAC1B,IAAI,KAAK,WAAW,CACvB;iBACA,GAAG,CAAC,UAAU,CAAC,EAAE,CAAC,UAAU,CAAC,OAAO,CAAC,OAAO,EAAE,EAAE,CAAC,CAAC;iBAClD,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,KAAK,EAAE,CAAC,CAC/B;SACF,CAAA;IACH,CAAC;IAED,EAAE;QACA,OAAO,GAAG,IAAI,CAAC,OAAO,CAAC,EAAE,IAAI,IAAI,CAAC,MAAM,CAAC,EAAE,EAAE,EAAE,CAAA;IACjD,CAAC;IAED,8DAA8D;IAC9D,GAAG,CAAC,KAAa;QACf,MAAM,UAAU,GAAG,QAAQ,KAAK,EAAE,CAAA;QAClC,mBAAmB;QACnB,IAAI,IAAI,CAAC,UAAU,CAAC,EAAE;YACpB,mBAAmB;YACnB,OAAO,IAAI,CAAC,UAAU,CAAC,EAAE,CAAA;SAC1B;QACD,OAAO,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,CAAA;IAC/B,CAAC;IAED,YAAY;QACV,OAAO,IAAI,CAAC,OAAO,CAAC,WAAW,CAAC,IAAI,CAAC,MAAM,CAAC,MAAM,EAAE,CAAC,CAAA;IACvD,CAAC;IAED,MAAM;QACJ,OAAO,SAAS,CAAA;IAClB,CAAC;IAED,QAAQ;QACN,OAAO,SAAS,CAAA;IAClB,CAAC;IAED,aAAa;QACX,OAAO,KAAK,CAAA;IACd,CAAC;IAED,MAAM;QACJ,OAAO;YACL,GAAG,MAAM,CAAC,WAAW,CACnB,IAAI,CAAC,IAAI,EAAE;iBACR,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,EAAE,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;iBAC1B,MAAM,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,KAAK,SAAS,CAAC,CACvC;YACD,QAAQ,EAAE,IAAI,CAAC,EAAE,EAAE;SACpB,CAAA;IACH,CAAC;IAED,eAAe;QACb,OAAO,IAAA,8BAAa,EAClB,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC,EACjB,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,EACd,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,EACf,IAAI,CAAC,GAAG,EACR,IAAI,CAAC,OAAO,EAAE,CACf,CAAA;IACH,CAAC;IAED,YAAY;QACV,MAAM,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC,IAAI,EAAE,CAAA;QACrC,OAAO,IAAA,wBAAO,EAAC,KAAK,EAAE,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAA;IAC3C,CAAC;CACF;AAzID,yCAyIC"}
|
|
@@ -82,7 +82,7 @@ class CramAdapter extends BaseAdapter_1.BaseFeatureDataAdapter {
|
|
|
82
82
|
const trimEnd = Math.min(end - chunkStart, chunkEnd - chunkStart);
|
|
83
83
|
const trimLength = trimEnd - trimStart;
|
|
84
84
|
const chunkSeq = chunk.get('seq') || chunk.get('residues');
|
|
85
|
-
return chunkSeq.
|
|
85
|
+
return chunkSeq.slice(trimStart, trimStart + trimLength);
|
|
86
86
|
})
|
|
87
87
|
.join('');
|
|
88
88
|
if (sequence.length !== end - start) {
|
|
@@ -180,7 +180,7 @@ class CramAdapter extends BaseAdapter_1.BaseFeatureDataAdapter {
|
|
|
180
180
|
});
|
|
181
181
|
if (tagFilter) {
|
|
182
182
|
filtered = filtered.filter(record => {
|
|
183
|
-
// @ts-
|
|
183
|
+
// @ts-expect-error
|
|
184
184
|
const val = record[tagFilter.tag];
|
|
185
185
|
return val === '*' ? val !== undefined : val === tagFilter.value;
|
|
186
186
|
});
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"CramAdapter.js","sourceRoot":"","sources":["../../src/CramAdapter/CramAdapter.ts"],"names":[],"mappings":";;;;;AAAA,qCAAmE;AACnE,yEAIgD;AAChD,6CAAsE;AACtE,8CAAoD;AACpD,kDAA0D;AAC1D,8CAAwC;AACxC,+BAAqC;AACrC,wFAA+D;AAe/D,MAAqB,WAAY,SAAQ,oCAAsB;IAA/D;;QACE,cAAS,GAAW,EAAE,CAAA;QAgBtB,gFAAgF;QACxE,2BAAsB,GAAa,EAAE,CAAA;IAwQ/C,CAAC;IAtQQ,KAAK,CAAC,YAAY;QACvB,MAAM,YAAY,GAAG,IAAI,CAAC,OAAO,CAAC,cAAc,CAAC,CAAA;QACjD,MAAM,YAAY,GAAG,IAAI,CAAC,OAAO,CAAC,cAAc,CAAC,CAAA;QACjD,IAAI,CAAC,YAAY,EAAE;YACjB,MAAM,IAAI,KAAK,CAAC,+BAA+B,CAAC,CAAA;SACjD;QACD,IAAI,CAAC,YAAY,EAAE;YACjB,MAAM,IAAI,KAAK,CAAC,+BAA+B,CAAC,CAAA;SACjD;QACD,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAE7B,MAAM,IAAI,GAAG,IAAI,sBAAe,CAAC;YAC/B,cAAc,EAAE,IAAA,iBAAY,EAAC,YAAY,EAAE,EAAE,CAAC;YAC9C,KAAK,EAAE,IAAI,gBAAS,CAAC,EAAE,UAAU,EAAE,IAAA,iBAAY,EAAC,YAAY,EAAE,EAAE,CAAC,EAAE,CAAC;YACpE,QAAQ,EAAE,CAAC,GAAG,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC,QAAQ,CAAC,GAAG,IAAI,CAAC;YAC7C,gBAAgB,EAAE,KAAK;YACvB,cAAc,EAAE,SAAW,EAAE,kDAAkD;SAChF,CAAC,CAAA;QAEF,IAAI,CAAC,IAAI,CAAC,aAAa,EAAE;YACvB,MAAM,IAAI,KAAK,CAAC,0BAA0B,CAAC,CAAA;SAC5C;QAED,MAAM,OAAO,GAAG,IAAI,CAAC,OAAO,CAAC,iBAAiB,CAAC,CAAA;QAC/C,MAAM,UAAU,GAAG,MAAM,IAAI,CAAC,aAAa,CAAC,OAAO,CAAC,CAAA;QAEpD,OAAO;YACL,IAAI;YACJ,eAAe,EAAE,UAAU,CAAC,WAAkC;SAC/D,CAAA;IACH,CAAC;IAEM,KAAK,CAAC,SAAS;QACpB,IAAI,CAAC,IAAI,CAAC,UAAU,EAAE;YACpB,IAAI,CAAC,UAAU,GAAG,IAAI,CAAC,YAAY,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE;gBAC9C,IAAI,CAAC,UAAU,GAAG,SAAS,CAAA;gBAC3B,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;SACH;QACD,OAAO,IAAI,CAAC,UAAU,CAAA;IACxB,CAAC;IAED,KAAK,CAAC,SAAS,CAAC,IAAkB;QAChC,MAAM,EAAE,IAAI,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACvC,OAAO,IAAI,CAAC,IAAI,CAAC,aAAa,EAAE,CAAA;IAClC,CAAC;IAEO,KAAK,CAAC,QAAQ,CACpB,KAAa,EACb,KAAa,EACb,GAAW;QAEX,KAAK,IAAI,CAAC,CAAA,CAAC,2CAA2C;QAEtD,MAAM,EAAE,eAAe,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QAClD,MAAM,OAAO,GAAG,IAAI,CAAC,mBAAmB,CAAC,KAAK,CAAC,IAAI,IAAI,CAAC,WAAW,CAAC,KAAK,CAAC,CAAA;QAC1E,IAAI,CAAC,OAAO,EAAE;YACZ,MAAM,IAAI,KAAK,CAAC,SAAS,CAAC,CAAA;SAC3B;QAED,MAAM,SAAS,GAAG,MAAM,IAAA,qBAAc,EACpC,eAAe;aACZ,WAAW,CAAC;YACX,OAAO;YACP,KAAK;YACL,GAAG;YACH,YAAY,EAAE,EAAE;SACjB,CAAC;aACD,IAAI,CAAC,IAAA,mBAAO,GAAE,CAAC,CACnB,CAAA;QAED,MAAM,QAAQ,GAAG,SAAS;aACvB,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;aAC/C,GAAG,CAAC,KAAK,CAAC,EAAE;YACX,MAAM,UAAU,GAAG,KAAK,CAAC,GAAG,CAAC,OAAO,CAAC,CAAA;YACrC,MAAM,QAAQ,GAAG,KAAK,CAAC,GAAG,CAAC,KAAK,CAAC,CAAA;YACjC,MAAM,SAAS,GAAG,IAAI,CAAC,GAAG,CAAC,KAAK,GAAG,UAAU,EAAE,CAAC,CAAC,CAAA;YACjD,MAAM,OAAO,GAAG,IAAI,CAAC,GAAG,CAAC,GAAG,GAAG,UAAU,EAAE,QAAQ,GAAG,UAAU,CAAC,CAAA;YACjE,MAAM,UAAU,GAAG,OAAO,GAAG,SAAS,CAAA;YACtC,MAAM,QAAQ,GAAG,KAAK,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,KAAK,CAAC,GAAG,CAAC,UAAU,CAAC,CAAA;YAC1D,OAAO,QAAQ,CAAC,
|
|
1
|
+
{"version":3,"file":"CramAdapter.js","sourceRoot":"","sources":["../../src/CramAdapter/CramAdapter.ts"],"names":[],"mappings":";;;;;AAAA,qCAAmE;AACnE,yEAIgD;AAChD,6CAAsE;AACtE,8CAAoD;AACpD,kDAA0D;AAC1D,8CAAwC;AACxC,+BAAqC;AACrC,wFAA+D;AAe/D,MAAqB,WAAY,SAAQ,oCAAsB;IAA/D;;QACE,cAAS,GAAW,EAAE,CAAA;QAgBtB,gFAAgF;QACxE,2BAAsB,GAAa,EAAE,CAAA;IAwQ/C,CAAC;IAtQQ,KAAK,CAAC,YAAY;QACvB,MAAM,YAAY,GAAG,IAAI,CAAC,OAAO,CAAC,cAAc,CAAC,CAAA;QACjD,MAAM,YAAY,GAAG,IAAI,CAAC,OAAO,CAAC,cAAc,CAAC,CAAA;QACjD,IAAI,CAAC,YAAY,EAAE;YACjB,MAAM,IAAI,KAAK,CAAC,+BAA+B,CAAC,CAAA;SACjD;QACD,IAAI,CAAC,YAAY,EAAE;YACjB,MAAM,IAAI,KAAK,CAAC,+BAA+B,CAAC,CAAA;SACjD;QACD,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAE7B,MAAM,IAAI,GAAG,IAAI,sBAAe,CAAC;YAC/B,cAAc,EAAE,IAAA,iBAAY,EAAC,YAAY,EAAE,EAAE,CAAC;YAC9C,KAAK,EAAE,IAAI,gBAAS,CAAC,EAAE,UAAU,EAAE,IAAA,iBAAY,EAAC,YAAY,EAAE,EAAE,CAAC,EAAE,CAAC;YACpE,QAAQ,EAAE,CAAC,GAAG,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC,QAAQ,CAAC,GAAG,IAAI,CAAC;YAC7C,gBAAgB,EAAE,KAAK;YACvB,cAAc,EAAE,SAAW,EAAE,kDAAkD;SAChF,CAAC,CAAA;QAEF,IAAI,CAAC,IAAI,CAAC,aAAa,EAAE;YACvB,MAAM,IAAI,KAAK,CAAC,0BAA0B,CAAC,CAAA;SAC5C;QAED,MAAM,OAAO,GAAG,IAAI,CAAC,OAAO,CAAC,iBAAiB,CAAC,CAAA;QAC/C,MAAM,UAAU,GAAG,MAAM,IAAI,CAAC,aAAa,CAAC,OAAO,CAAC,CAAA;QAEpD,OAAO;YACL,IAAI;YACJ,eAAe,EAAE,UAAU,CAAC,WAAkC;SAC/D,CAAA;IACH,CAAC;IAEM,KAAK,CAAC,SAAS;QACpB,IAAI,CAAC,IAAI,CAAC,UAAU,EAAE;YACpB,IAAI,CAAC,UAAU,GAAG,IAAI,CAAC,YAAY,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE;gBAC9C,IAAI,CAAC,UAAU,GAAG,SAAS,CAAA;gBAC3B,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;SACH;QACD,OAAO,IAAI,CAAC,UAAU,CAAA;IACxB,CAAC;IAED,KAAK,CAAC,SAAS,CAAC,IAAkB;QAChC,MAAM,EAAE,IAAI,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACvC,OAAO,IAAI,CAAC,IAAI,CAAC,aAAa,EAAE,CAAA;IAClC,CAAC;IAEO,KAAK,CAAC,QAAQ,CACpB,KAAa,EACb,KAAa,EACb,GAAW;QAEX,KAAK,IAAI,CAAC,CAAA,CAAC,2CAA2C;QAEtD,MAAM,EAAE,eAAe,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QAClD,MAAM,OAAO,GAAG,IAAI,CAAC,mBAAmB,CAAC,KAAK,CAAC,IAAI,IAAI,CAAC,WAAW,CAAC,KAAK,CAAC,CAAA;QAC1E,IAAI,CAAC,OAAO,EAAE;YACZ,MAAM,IAAI,KAAK,CAAC,SAAS,CAAC,CAAA;SAC3B;QAED,MAAM,SAAS,GAAG,MAAM,IAAA,qBAAc,EACpC,eAAe;aACZ,WAAW,CAAC;YACX,OAAO;YACP,KAAK;YACL,GAAG;YACH,YAAY,EAAE,EAAE;SACjB,CAAC;aACD,IAAI,CAAC,IAAA,mBAAO,GAAE,CAAC,CACnB,CAAA;QAED,MAAM,QAAQ,GAAG,SAAS;aACvB,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;aAC/C,GAAG,CAAC,KAAK,CAAC,EAAE;YACX,MAAM,UAAU,GAAG,KAAK,CAAC,GAAG,CAAC,OAAO,CAAC,CAAA;YACrC,MAAM,QAAQ,GAAG,KAAK,CAAC,GAAG,CAAC,KAAK,CAAC,CAAA;YACjC,MAAM,SAAS,GAAG,IAAI,CAAC,GAAG,CAAC,KAAK,GAAG,UAAU,EAAE,CAAC,CAAC,CAAA;YACjD,MAAM,OAAO,GAAG,IAAI,CAAC,GAAG,CAAC,GAAG,GAAG,UAAU,EAAE,QAAQ,GAAG,UAAU,CAAC,CAAA;YACjE,MAAM,UAAU,GAAG,OAAO,GAAG,SAAS,CAAA;YACtC,MAAM,QAAQ,GAAG,KAAK,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,KAAK,CAAC,GAAG,CAAC,UAAU,CAAC,CAAA;YAC1D,OAAO,QAAQ,CAAC,KAAK,CAAC,SAAS,EAAE,SAAS,GAAG,UAAU,CAAC,CAAA;QAC1D,CAAC,CAAC;aACD,IAAI,CAAC,EAAE,CAAC,CAAA;QAEX,IAAI,QAAQ,CAAC,MAAM,KAAK,GAAG,GAAG,KAAK,EAAE;YACnC,MAAM,IAAI,KAAK,CACb,mCAAmC,OAAO,IAAI,CAC5C,KAAK,GAAG,CAAC,CACV,CAAC,cAAc,EAAE,IAAI,GAAG,CAAC,cAAc,EAAE,aAAa,QAAQ,CAAC,MAAM,CAAC,cAAc,EAAE,oCAAoC,CACzH,GAAG,GAAG,KAAK,CACZ,CAAC,cAAc,EAAE,EAAE,CACrB,CAAA;SACF;QACD,OAAO,QAAQ,CAAA;IACjB,CAAC;IAEO,KAAK,CAAC,QAAQ,CAAC,IAAkB;QACvC,MAAM,EAAE,cAAc,GAAG,GAAG,EAAE,GAAE,CAAC,EAAE,GAAG,IAAI,IAAI,EAAE,CAAA;QAChD,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACnC,cAAc,CAAC,mBAAmB,CAAC,CAAA;QACnC,MAAM,EAAE,IAAI,EAAE,GAAG,IAAI,CAAA;QACrB,MAAM,SAAS,GAAG,MAAM,IAAI,CAAC,IAAI,CAAC,YAAY,EAAE,CAAA;QAEhD,oDAAoD;QACpD,2CAA2C;QAC3C,MAAM,QAAQ,GAAa,EAAE,CAAA;QAC7B,MAAM,QAAQ,GAA2B,EAAE,CAAA;QAC3C,SAAS;aACN,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,KAAK,IAAI,CAAC;aAC3B,OAAO,CAAC,CAAC,MAAM,EAAE,KAAK,EAAE,EAAE;YACzB,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE;gBACzB,IAAI,IAAI,CAAC,GAAG,KAAK,IAAI,EAAE;oBACrB,uBAAuB;oBACvB,MAAM,OAAO,GAAG,IAAI,CAAC,KAAK,CAAA;oBAC1B,QAAQ,CAAC,OAAO,CAAC,GAAG,KAAK,CAAA;oBACzB,QAAQ,CAAC,KAAK,CAAC,GAAG,OAAO,CAAA;iBAC1B;YACH,CAAC,CAAC,CAAA;QACJ,CAAC,CAAC,CAAA;QAEJ,MAAM,UAAU,GAAG,SAAS;aACzB,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,KAAK,IAAI,CAAC;aAC3B,GAAG,CAAC,MAAM,CAAC,EAAE,WAAC,OAAA,MAAA,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,GAAG,KAAK,IAAI,CAAC,0CAAE,KAAK,CAAA,EAAA,CAAC,CAAA;QAEpE,MAAM,IAAI,GAAG,EAAE,QAAQ,EAAE,QAAQ,EAAE,UAAU,EAAE,CAAA;QAC/C,cAAc,CAAC,EAAE,CAAC,CAAA;QAClB,IAAI,CAAC,SAAS,GAAG,IAAI,CAAA;QACrB,OAAO,EAAE,SAAS,EAAE,IAAI,EAAE,GAAG,IAAI,EAAE,CAAA;IACrC,CAAC;IAEO,KAAK,CAAC,KAAK,CAAC,IAAkB;QACpC,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE;YAChB,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE;gBAC1C,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;gBACvB,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;SACH;QACD,OAAO,IAAI,CAAC,MAAM,CAAA;IACpB,CAAC;IAED,KAAK,CAAC,WAAW,CAAC,IAAkB;QAClC,MAAM,EAAE,SAAS,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;QAC5C,IAAI,CAAC,SAAS,CAAC,QAAQ,EAAE;YACvB,MAAM,IAAI,KAAK,CAAC,+BAA+B,CAAC,CAAA;SACjD;QACD,OAAO,SAAS,CAAC,QAAQ,CAAA;IAC3B,CAAC;IAED,mEAAmE;IACnE,gEAAgE;IAChE,WAAW,CAAC,OAAe;QACzB,IAAI,IAAI,CAAC,SAAS,CAAC,QAAQ,EAAE;YAC3B,OAAO,IAAI,CAAC,SAAS,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAA;SACxC;QACD,IAAI,IAAI,CAAC,cAAc,EAAE;YACvB,OAAO,IAAI,CAAC,cAAc,CAAC,OAAO,CAAC,OAAO,CAAC,CAAA;SAC5C;QACD,OAAO,SAAS,CAAA;IAClB,CAAC;IAED,mEAAmE;IACnE,gEAAgE;IAChE,WAAW,CAAC,KAAa;;QACvB,OAAO,CAAA,MAAA,IAAI,CAAC,SAAS,CAAC,QAAQ,0CAAG,KAAK,CAAC,MAAI,MAAA,IAAI,CAAC,cAAc,0CAAG,KAAK,CAAC,CAAA,CAAA;IACzE,CAAC;IAED,mBAAmB,CAAC,KAAa;QAC/B,OAAO,IAAI,CAAC,sBAAsB,CAAC,KAAK,CAAC,CAAA;IAC3C,CAAC;IAED,WAAW,CACT,MAA6C,EAC7C,IAEC;QAED,MAAM,EAAE,MAAM,EAAE,QAAQ,EAAE,cAAc,GAAG,GAAG,EAAE,GAAE,CAAC,EAAE,GAAG,IAAI,IAAI,EAAE,CAAA;QAClE,MAAM,EAAE,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE,eAAe,EAAE,GAAG,MAAM,CAAA;QAEvD,OAAO,IAAA,uBAAgB,EAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;YAChD,MAAM,EAAE,IAAI,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;YAEvC,MAAM,KAAK,GAAG,IAAI,CAAC,WAAW,CAAC,OAAO,CAAC,CAAA;YACvC,IAAI,KAAK,KAAK,SAAS,EAAE;gBACvB,OAAO,CAAC,IAAI,CAAC,iBAAiB,EAAE,OAAO,CAAC,CAAA;gBACxC,QAAQ,CAAC,QAAQ,EAAE,CAAA;gBACnB,OAAM;aACP;YAED,IAAI,eAAe,EAAE;gBACnB,IAAI,CAAC,sBAAsB,CAAC,KAAK,CAAC,GAAG,eAAe,CAAA;aACrD;YACD,cAAc,CAAC,wBAAwB,CAAC,CAAA;YACxC,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,kBAAkB,CAAC,KAAK,EAAE,KAAK,EAAE,GAAG,CAAC,CAAA;YAChE,IAAA,uBAAgB,EAAC,MAAM,CAAC,CAAA;YACxB,MAAM,EACJ,WAAW,GAAG,CAAC,EACf,WAAW,GAAG,CAAC,EACf,SAAS,EACT,QAAQ,GACT,GAAG,QAAQ,IAAI,EAAE,CAAA;YAElB,IAAI,QAAQ,GAAG,OAAO,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE;gBACrC,MAAM,KAAK,GAAG,MAAM,CAAC,KAAK,CAAA;gBAC1B,OAAO,CAAC,KAAK,GAAG,WAAW,CAAC,KAAK,WAAW,IAAI,CAAC,CAAC,KAAK,GAAG,WAAW,CAAC,CAAA;YACxE,CAAC,CAAC,CAAA;YAEF,IAAI,SAAS,EAAE;gBACb,QAAQ,GAAG,QAAQ,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE;oBAClC,mBAAmB;oBACnB,MAAM,GAAG,GAAG,MAAM,CAAC,SAAS,CAAC,GAAG,CAAC,CAAA;oBACjC,OAAO,GAAG,KAAK,GAAG,CAAC,CAAC,CAAC,GAAG,KAAK,SAAS,CAAC,CAAC,CAAC,GAAG,KAAK,SAAS,CAAC,KAAK,CAAA;gBAClE,CAAC,CAAC,CAAA;aACH;YAED,IAAI,QAAQ,EAAE;gBACZ,QAAQ,GAAG,QAAQ,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,CAAC,MAAM,CAAC,QAAQ,KAAK,QAAQ,CAAC,CAAA;aACnE;YAED,QAAQ,CAAC,OAAO,CAAC,MAAM,CAAC,EAAE;gBACxB,QAAQ,CAAC,IAAI,CAAC,IAAI,CAAC,mBAAmB,CAAC,MAAM,CAAC,CAAC,CAAA;YACjD,CAAC,CAAC,CAAA;YACF,cAAc,CAAC,EAAE,CAAC,CAAA;YAClB,QAAQ,CAAC,QAAQ,EAAE,CAAA;QACrB,CAAC,EAAE,MAAM,CAAC,CAAA;IACZ,CAAC;IAED,aAAa,EAAC,gBAAgB,IAAS,CAAC;IAExC,mBAAmB,CAAC,MAAkB;QACpC,OAAO,IAAI,iCAAuB,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;IAClD,CAAC;IAED,wEAAwE;IACxE,KAAK,CAAC,oBAAoB,CAAC,OAAiB,EAAE,IAAkB;QAC9D,MAAM,KAAK,GAAG,MAAM,IAAI,CAAC,eAAe,CAAC,OAAO,EAAE,IAAI,CAAC,CAAA;QACvD,MAAM,cAAc,GAAG,IAAI,CAAC,OAAO,CAAC,gBAAgB,CAAC,CAAA;QACrD,OAAO;YACL,KAAK;YACL,cAAc;SACf,CAAA;IACH,CAAC;IAED;;;;OAIG;IACK,KAAK,CAAC,eAAe,CAAC,OAAiB,EAAE,KAAmB;QAClE,MAAM,EAAE,IAAI,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACvC,MAAM,YAAY,GAAG,MAAM,OAAO,CAAC,GAAG,CACpC,OAAO,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE;YACnB,MAAM,EAAE,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,MAAM,CAAA;YACtC,MAAM,KAAK,GAAG,IAAI,CAAC,WAAW,CAAC,OAAO,CAAC,CAAA;YACvC,OAAO,KAAK,KAAK,SAAS;gBACxB,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,kBAAkB,CAAC,KAAK,EAAE,KAAK,EAAE,GAAG,CAAC;gBAClD,CAAC,CAAC,CAAC,EAAE,UAAU,EAAE,CAAC,EAAE,CAAC,CAAA;QACzB,CAAC,CAAC,CACH,CAAA;QAED,OAAO,YAAY,CAAC,IAAI,EAAE,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,UAAU,EAAE,CAAC,CAAC,CAAA;IAClE,CAAC;CACF;AA1RD,8BA0RC"}
|
|
@@ -94,9 +94,9 @@ class CramSlightlyLazyFeature {
|
|
|
94
94
|
}
|
|
95
95
|
get(field) {
|
|
96
96
|
const methodName = `_get_${field}`;
|
|
97
|
-
// @ts-
|
|
97
|
+
// @ts-expect-error
|
|
98
98
|
if (this[methodName]) {
|
|
99
|
-
// @ts-
|
|
99
|
+
// @ts-expect-error
|
|
100
100
|
return this[methodName]();
|
|
101
101
|
}
|
|
102
102
|
return undefined;
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"CramSlightlyLazyFeature.js","sourceRoot":"","sources":["../../src/CramAdapter/CramSlightlyLazyFeature.ts"],"names":[],"mappings":";;AASA,iCAAsE;AAEtE,MAAqB,uBAAuB;IAC1C,wEAAwE;IACxE,iFAAiF;IACjF,YAAoB,MAAkB,EAAU,MAAmB;QAA/C,WAAM,GAAN,MAAM,CAAY;QAAU,WAAM,GAAN,MAAM,CAAa;IAAG,CAAC;IAEvE,SAAS;QACP,OAAO,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAA;IAC7B,CAAC;IAED,UAAU;QACR,OAAO,IAAI,CAAC,MAAM,CAAC,cAAc,GAAG,CAAC,CAAA;IACvC,CAAC;IAED,QAAQ;;QACN,OAAO,IAAI,CAAC,MAAM,CAAC,cAAc,GAAG,CAAC,MAAA,IAAI,CAAC,MAAM,CAAC,WAAW,mCAAI,CAAC,CAAC,GAAG,CAAC,CAAA;IACxE,CAAC;IAED,uBAAuB;QACrB,OAAO,IAAI,CAAC,MAAM,CAAC,YAAY,CAAA;IACjC,CAAC;IAED,SAAS;QACP,OAAO,OAAO,CAAA;IAChB,CAAC;IAED,UAAU;QACR,OAAO,IAAI,CAAC,MAAM,CAAC,cAAc,CAAA;IACnC,CAAC;IAED,UAAU;QACR,OAAO,IAAI,CAAC,MAAM,CAAC,KAAK,CAAA;IAC1B,CAAC;IAED,WAAW;QACT,OAAO,IAAI,CAAC,MAAM,CAAC,qBAAqB,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;IACrD,CAAC;IAED,cAAc;QACZ,MAAM,EAAE,GAAG,IAAI,CAAC,MAAM,CAAC,SAAS,CAAC,UAAU,CAAA;QAC3C,OAAO,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC,IAAI,CAAC,MAAM,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,SAAS,CAAA;IACrD,CAAC;IAED,SAAS;QACP,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,aAAa,IAAI,EAAE,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAA;IACpD,CAAC;IAED,OAAO;QACL,OAAO,IAAI,CAAC,MAAM,CAAC,aAAa,CAAA;IAClC,CAAC;IAED,YAAY;QACV,OAAO,IAAI,CAAC,MAAM,CAAC,WAAW,CAAC,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,CAAA;IACxD,CAAC;IAED,cAAc;QACZ,OAAO,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAA;IAC3B,CAAC;IAED,qBAAqB;QACnB,OAAO,IAAI,CAAC,MAAM,CAAC,QAAQ,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,kBAAkB,EAAE,CAAC,CAAC,CAAC,SAAS,CAAA;IAC9E,CAAC;IAED,oBAAoB;QAClB,OAAO,IAAI,CAAC,MAAM,CAAC,cAAc,IAAI,IAAI,CAAC,MAAM,CAAC,YAAY,CAAA;IAC/D,CAAC;IAED,aAAa;QACX,OAAO,IAAI,CAAC,MAAM,CAAC,IAAI;YACrB,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,WAAW,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,UAAU,CAAC;YACtD,CAAC,CAAC,SAAS,CAAA;IACf,CAAC;IAED,0BAA0B;QACxB,OAAO,IAAI,CAAC,MAAM,CAAC,IAAI;YACrB,CAAC,CAAC,GAAG,IAAI,CAAC,MAAM,CAAC,WAAW,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,UAAU,CAAC,IACrD,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,cACnB,EAAE;YACJ,CAAC,CAAC,SAAS,CAAA;IACf,CAAC;IAED,aAAa;;QACX,OAAO,MAAA,IAAI,CAAC,MAAM,CAAC,IAAI,0CAAE,cAAc,CAAA;IACzC,CAAC;IAED,SAAS;QACP,MAAM,EAAE,GAAG,IAAI,CAAC,cAAc,EAAE,CAAA;QAChC,MAAM,EAAE,IAAI,EAAE,GAAG,IAAI,CAAC,MAAM,CAAA;QAC5B,4DAA4D;QAC5D,OAAO,EAAE,KAAK,SAAS,CAAC,CAAC,CAAC,EAAE,GAAG,IAAI,EAAE,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAA;IAClD,CAAC;IAED,QAAQ;QACN,OAAO,IAAI,CAAC,MAAM,CAAC,YAAY,EAAE,CAAA;IACnC,CAAC;IAED,kDAAkD;IAClD,UAAU;QACR,OAAO,IAAA,0BAAmB,EACxB,IAAI,CAAC,MAAM,CAAC,YAAY,EACxB,IAAI,CAAC,MAAM,CAAC,cAAc,EAC1B,IAAI,CAAC,MAAM,CAAC,UAAU,EACtB,IAAI,CAAC,MAAM,CAAC,UAAU,CACvB,CAAA;IACH,CAAC;IAED,IAAI;QACF,OAAO,MAAM,CAAC,mBAAmB,CAAC,uBAAuB,CAAC,SAAS,CAAC;aACjE,MAAM,CACL,IAAI,CAAC,EAAE,CACL,IAAI,CAAC,UAAU,CAAC,OAAO,CAAC;YACxB,IAAI,KAAK,iBAAiB;YAC1B,IAAI,KAAK,yBAAyB,CACrC;aACA,GAAG,CAAC,UAAU,CAAC,EAAE,CAAC,UAAU,CAAC,OAAO,CAAC,OAAO,EAAE,EAAE,CAAC,CAAC,CAAA;IACvD,CAAC;IAED,EAAE;QACA,OAAO,GAAG,IAAI,CAAC,MAAM,CAAC,EAAE,IAAI,IAAI,CAAC,MAAM,CAAC,QAAQ,EAAE,CAAA;IACpD,CAAC;IAED,GAAG,CAAC,KAAa;QACf,MAAM,UAAU,GAAG,QAAQ,KAAK,EAAE,CAAA;QAClC,
|
|
1
|
+
{"version":3,"file":"CramSlightlyLazyFeature.js","sourceRoot":"","sources":["../../src/CramAdapter/CramSlightlyLazyFeature.ts"],"names":[],"mappings":";;AASA,iCAAsE;AAEtE,MAAqB,uBAAuB;IAC1C,wEAAwE;IACxE,iFAAiF;IACjF,YAAoB,MAAkB,EAAU,MAAmB;QAA/C,WAAM,GAAN,MAAM,CAAY;QAAU,WAAM,GAAN,MAAM,CAAa;IAAG,CAAC;IAEvE,SAAS;QACP,OAAO,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAA;IAC7B,CAAC;IAED,UAAU;QACR,OAAO,IAAI,CAAC,MAAM,CAAC,cAAc,GAAG,CAAC,CAAA;IACvC,CAAC;IAED,QAAQ;;QACN,OAAO,IAAI,CAAC,MAAM,CAAC,cAAc,GAAG,CAAC,MAAA,IAAI,CAAC,MAAM,CAAC,WAAW,mCAAI,CAAC,CAAC,GAAG,CAAC,CAAA;IACxE,CAAC;IAED,uBAAuB;QACrB,OAAO,IAAI,CAAC,MAAM,CAAC,YAAY,CAAA;IACjC,CAAC;IAED,SAAS;QACP,OAAO,OAAO,CAAA;IAChB,CAAC;IAED,UAAU;QACR,OAAO,IAAI,CAAC,MAAM,CAAC,cAAc,CAAA;IACnC,CAAC;IAED,UAAU;QACR,OAAO,IAAI,CAAC,MAAM,CAAC,KAAK,CAAA;IAC1B,CAAC;IAED,WAAW;QACT,OAAO,IAAI,CAAC,MAAM,CAAC,qBAAqB,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;IACrD,CAAC;IAED,cAAc;QACZ,MAAM,EAAE,GAAG,IAAI,CAAC,MAAM,CAAC,SAAS,CAAC,UAAU,CAAA;QAC3C,OAAO,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC,IAAI,CAAC,MAAM,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,SAAS,CAAA;IACrD,CAAC;IAED,SAAS;QACP,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,aAAa,IAAI,EAAE,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAA;IACpD,CAAC;IAED,OAAO;QACL,OAAO,IAAI,CAAC,MAAM,CAAC,aAAa,CAAA;IAClC,CAAC;IAED,YAAY;QACV,OAAO,IAAI,CAAC,MAAM,CAAC,WAAW,CAAC,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,CAAA;IACxD,CAAC;IAED,cAAc;QACZ,OAAO,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAA;IAC3B,CAAC;IAED,qBAAqB;QACnB,OAAO,IAAI,CAAC,MAAM,CAAC,QAAQ,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,kBAAkB,EAAE,CAAC,CAAC,CAAC,SAAS,CAAA;IAC9E,CAAC;IAED,oBAAoB;QAClB,OAAO,IAAI,CAAC,MAAM,CAAC,cAAc,IAAI,IAAI,CAAC,MAAM,CAAC,YAAY,CAAA;IAC/D,CAAC;IAED,aAAa;QACX,OAAO,IAAI,CAAC,MAAM,CAAC,IAAI;YACrB,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,WAAW,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,UAAU,CAAC;YACtD,CAAC,CAAC,SAAS,CAAA;IACf,CAAC;IAED,0BAA0B;QACxB,OAAO,IAAI,CAAC,MAAM,CAAC,IAAI;YACrB,CAAC,CAAC,GAAG,IAAI,CAAC,MAAM,CAAC,WAAW,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,UAAU,CAAC,IACrD,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,cACnB,EAAE;YACJ,CAAC,CAAC,SAAS,CAAA;IACf,CAAC;IAED,aAAa;;QACX,OAAO,MAAA,IAAI,CAAC,MAAM,CAAC,IAAI,0CAAE,cAAc,CAAA;IACzC,CAAC;IAED,SAAS;QACP,MAAM,EAAE,GAAG,IAAI,CAAC,cAAc,EAAE,CAAA;QAChC,MAAM,EAAE,IAAI,EAAE,GAAG,IAAI,CAAC,MAAM,CAAA;QAC5B,4DAA4D;QAC5D,OAAO,EAAE,KAAK,SAAS,CAAC,CAAC,CAAC,EAAE,GAAG,IAAI,EAAE,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAA;IAClD,CAAC;IAED,QAAQ;QACN,OAAO,IAAI,CAAC,MAAM,CAAC,YAAY,EAAE,CAAA;IACnC,CAAC;IAED,kDAAkD;IAClD,UAAU;QACR,OAAO,IAAA,0BAAmB,EACxB,IAAI,CAAC,MAAM,CAAC,YAAY,EACxB,IAAI,CAAC,MAAM,CAAC,cAAc,EAC1B,IAAI,CAAC,MAAM,CAAC,UAAU,EACtB,IAAI,CAAC,MAAM,CAAC,UAAU,CACvB,CAAA;IACH,CAAC;IAED,IAAI;QACF,OAAO,MAAM,CAAC,mBAAmB,CAAC,uBAAuB,CAAC,SAAS,CAAC;aACjE,MAAM,CACL,IAAI,CAAC,EAAE,CACL,IAAI,CAAC,UAAU,CAAC,OAAO,CAAC;YACxB,IAAI,KAAK,iBAAiB;YAC1B,IAAI,KAAK,yBAAyB,CACrC;aACA,GAAG,CAAC,UAAU,CAAC,EAAE,CAAC,UAAU,CAAC,OAAO,CAAC,OAAO,EAAE,EAAE,CAAC,CAAC,CAAA;IACvD,CAAC;IAED,EAAE;QACA,OAAO,GAAG,IAAI,CAAC,MAAM,CAAC,EAAE,IAAI,IAAI,CAAC,MAAM,CAAC,QAAQ,EAAE,CAAA;IACpD,CAAC;IAED,GAAG,CAAC,KAAa;QACf,MAAM,UAAU,GAAG,QAAQ,KAAK,EAAE,CAAA;QAClC,mBAAmB;QACnB,IAAI,IAAI,CAAC,UAAU,CAAC,EAAE;YACpB,mBAAmB;YACnB,OAAO,IAAI,CAAC,UAAU,CAAC,EAAE,CAAA;SAC1B;QACD,OAAO,SAAS,CAAA;IAClB,CAAC;IAED,MAAM;QACJ,OAAO,SAAS,CAAA;IAClB,CAAC;IAED,QAAQ;QACN,OAAO,SAAS,CAAA;IAClB,CAAC;IAED,GAAG,KAAI,CAAC;IAER,aAAa;QACX,OAAO,KAAK,CAAA;IACd,CAAC;IAED,YAAY;QACV,MAAM,UAAU,GAAG,IAAI,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;QACzC,IAAI,UAAU,CAAC,MAAM,EAAE;YACrB,MAAM,MAAM,GACV,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC;gBACvB,CAAC,CAAC,UAAU,CAAC,UAAU,CAAC,MAAM,GAAG,CAAC,CAAC;gBACnC,CAAC,CAAC,UAAU,CAAC,CAAC,CAAC,CAAA;YACnB,MAAM,EAAE,IAAI,EAAE,OAAO,EAAE,GAAG,MAAM,CAAA;YAChC,IAAI,IAAI,KAAK,UAAU,IAAI,IAAI,KAAK,UAAU,EAAE;gBAC9C,OAAO,OAAO,CAAA;aACf;SACF;QACD,OAAO,CAAC,CAAA;IACV,CAAC;IAED,MAAM;QACJ,OAAO;YACL,GAAG,MAAM,CAAC,WAAW,CACnB,IAAI,CAAC,IAAI,EAAE;iBACR,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,EAAE,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;iBAC1B,MAAM,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,KAAK,SAAS,CAAC,CACvC;YACD,QAAQ,EAAE,IAAI,CAAC,EAAE,EAAE;SACpB,CAAA;IACH,CAAC;IAED,eAAe;QACb,MAAM,YAAY,GAAG,IAAI,CAAC,MAAM,CAAC,YAAY,CAAA;QAC7C,MAAM,IAAI,GAAG,IAAI,CAAC,OAAO,EAAE,CAAA;QAC3B,MAAM,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC,CAAA;QAC/B,OAAO,IAAA,+BAAwB,EAAC,YAAY,EAAE,KAAK,EAAE,IAAI,CAAC,CAAA;IAC5D,CAAC;CACF;AAhLD,0CAgLC"}
|
package/dist/CramAdapter/util.js
CHANGED
|
@@ -137,14 +137,14 @@ function readFeaturesToCIGAR(readFeatures, alignmentStart, readLen, refRegion) {
|
|
|
137
137
|
for (let i = 0; i < readFeatures.length; i++) {
|
|
138
138
|
const { code, refPos, sub, data } = readFeatures[i];
|
|
139
139
|
sublen = refPos - lastPos;
|
|
140
|
-
seq += ref.
|
|
140
|
+
seq += ref.slice(lastPos - refStart, refPos - refStart);
|
|
141
141
|
lastPos = refPos;
|
|
142
142
|
if (insLen > 0 && sublen) {
|
|
143
143
|
cigar += `${insLen}I`;
|
|
144
144
|
insLen = 0;
|
|
145
145
|
}
|
|
146
146
|
if (oplen && op !== 'M') {
|
|
147
|
-
cigar += oplen
|
|
147
|
+
cigar += `${oplen}${op}`;
|
|
148
148
|
oplen = 0;
|
|
149
149
|
}
|
|
150
150
|
if (sublen) {
|
|
@@ -175,7 +175,7 @@ function readFeaturesToCIGAR(readFeatures, alignmentStart, readLen, refRegion) {
|
|
|
175
175
|
// Deletion or Ref Skip
|
|
176
176
|
lastPos += data;
|
|
177
177
|
if (oplen) {
|
|
178
|
-
cigar += oplen
|
|
178
|
+
cigar += `${oplen}${op}`;
|
|
179
179
|
}
|
|
180
180
|
cigar += data + code;
|
|
181
181
|
oplen = 0;
|
|
@@ -184,7 +184,7 @@ function readFeaturesToCIGAR(readFeatures, alignmentStart, readLen, refRegion) {
|
|
|
184
184
|
// Insertion or soft-clip
|
|
185
185
|
seq += data;
|
|
186
186
|
if (oplen) {
|
|
187
|
-
cigar += oplen
|
|
187
|
+
cigar += `${oplen}${op}`;
|
|
188
188
|
}
|
|
189
189
|
cigar += data.length + code;
|
|
190
190
|
oplen = 0;
|
|
@@ -193,7 +193,7 @@ function readFeaturesToCIGAR(readFeatures, alignmentStart, readLen, refRegion) {
|
|
|
193
193
|
// Single base insertion
|
|
194
194
|
// seq += data
|
|
195
195
|
if (oplen) {
|
|
196
|
-
cigar += oplen
|
|
196
|
+
cigar += `${oplen}${op}`;
|
|
197
197
|
}
|
|
198
198
|
insLen++;
|
|
199
199
|
seq += data;
|
|
@@ -202,14 +202,14 @@ function readFeaturesToCIGAR(readFeatures, alignmentStart, readLen, refRegion) {
|
|
|
202
202
|
else if (code === 'P') {
|
|
203
203
|
// Padding
|
|
204
204
|
if (oplen) {
|
|
205
|
-
cigar += oplen
|
|
205
|
+
cigar += `${oplen}${op}`;
|
|
206
206
|
}
|
|
207
207
|
cigar += `${data}P`;
|
|
208
208
|
}
|
|
209
209
|
else if (code === 'H') {
|
|
210
210
|
// Hard clip
|
|
211
211
|
if (oplen) {
|
|
212
|
-
cigar += oplen
|
|
212
|
+
cigar += `${oplen}${op}`;
|
|
213
213
|
}
|
|
214
214
|
cigar += `${data}H`;
|
|
215
215
|
oplen = 0;
|
|
@@ -221,9 +221,9 @@ function readFeaturesToCIGAR(readFeatures, alignmentStart, readLen, refRegion) {
|
|
|
221
221
|
}
|
|
222
222
|
if (seq.length !== readLen) {
|
|
223
223
|
sublen = readLen - seq.length;
|
|
224
|
-
seq += ref.
|
|
224
|
+
seq += ref.slice(lastPos - refStart, lastPos - refStart + sublen);
|
|
225
225
|
if (oplen && op !== 'M') {
|
|
226
|
-
cigar += oplen
|
|
226
|
+
cigar += `${oplen}${op}`;
|
|
227
227
|
oplen = 0;
|
|
228
228
|
}
|
|
229
229
|
op = 'M';
|
|
@@ -233,7 +233,7 @@ function readFeaturesToCIGAR(readFeatures, alignmentStart, readLen, refRegion) {
|
|
|
233
233
|
cigar += `${insLen}I`;
|
|
234
234
|
}
|
|
235
235
|
if (oplen) {
|
|
236
|
-
cigar += oplen
|
|
236
|
+
cigar += `${oplen}${op}`;
|
|
237
237
|
}
|
|
238
238
|
return cigar;
|
|
239
239
|
}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"util.js","sourceRoot":"","sources":["../../src/CramAdapter/util.ts"],"names":[],"mappings":";;;AAeA,SAAgB,wBAAwB,CACtC,YAA0B,EAC1B,KAAa,EACb,IAAsB;IAEtB,IAAI,CAAC,YAAY,EAAE;QACjB,OAAO,EAAE,CAAA;KACV;IACD,MAAM,UAAU,GAAe,IAAI,KAAK,CAAC,YAAY,CAAC,MAAM,CAAC,CAAA;IAC7D,IAAI,CAAC,GAAG,CAAC,CAAA;IACT,IAAI,MAAM,GAAG,CAAC,CAAA;IACd,IAAI,MAAM,GAAG,CAAC,CAAA;IACd,IAAI,MAAM,GAAG,CAAC,CAAA;IACd,IAAI,OAAO,GAAG,KAAK,CAAA;IAEnB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,YAAY,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;QAC5C,MAAM,CAAC,GAAG,YAAY,CAAC,CAAC,CAAC,CAAA;QACzB,MAAM,EAAE,IAAI,EAAE,GAAG,EAAE,IAAI,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC,CAAA;QACvC,MAAM,GAAG,MAAM,GAAG,OAAO,CAAA;QACzB,OAAO,GAAG,MAAM,CAAA;QAEhB,IAAI,MAAM,IAAI,MAAM,GAAG,CAAC,EAAE;YACxB,UAAU,CAAC,CAAC,EAAE,CAAC,GAAG;gBAChB,KAAK,EAAE,MAAM;gBACb,IAAI,EAAE,WAAW;gBACjB,IAAI,EAAE,GAAG,MAAM,EAAE;gBACjB,MAAM,EAAE,CAAC;aACV,CAAA;YACD,MAAM,GAAG,CAAC,CAAA;SACX;QACD,MAAM,GAAG,CAAC,CAAC,MAAM,GAAG,CAAC,GAAG,KAAK,CAAA;QAE7B,IAAI,IAAI,KAAK,GAAG,EAAE;YAChB,eAAe;YACf,UAAU,CAAC,CAAC,EAAE,CAAC,GAAG;gBAChB,KAAK,EAAE,MAAM;gBACb,MAAM,EAAE,CAAC;gBACT,IAAI,EAAE,GAAG;gBACT,IAAI,EAAE,IAAI,aAAJ,IAAI,uBAAJ,IAAI,CAAG,GAAG,GAAG,CAAC,CAAC;gBACrB,OAAO,EAAE,GAAG,aAAH,GAAG,uBAAH,GAAG,CAAE,WAAW,EAAE;gBAC3B,IAAI,EAAE,UAAU;aACjB,CAAA;SACF;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,YAAY;YACZ,UAAU,CAAC,CAAC,EAAE,CAAC,GAAG;gBAChB,KAAK,EAAE,MAAM;gBACb,IAAI,EAAE,WAAW;gBACjB,IAAI,EAAE,GAAG,IAAI,CAAC,MAAM,EAAE;gBACtB,MAAM,EAAE,CAAC;aACV,CAAA;SACF;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,iBAAiB;YACjB,UAAU,CAAC,CAAC,EAAE,CAAC,GAAG;gBAChB,IAAI,EAAE,MAAM;gBACZ,MAAM,EAAE,IAAI;gBACZ,KAAK,EAAE,MAAM;gBACb,IAAI,EAAE,GAAG;aACV,CAAA;SACF;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,YAAY;YACZ,MAAM,GAAG,GAAG,IAAI,CAAC,MAAM,CAAA;YACvB,UAAU,CAAC,CAAC,EAAE,CAAC,GAAG;gBAChB,KAAK,EAAE,MAAM;gBACb,IAAI,EAAE,UAAU;gBAChB,IAAI,EAAE,IAAI,GAAG,EAAE;gBACf,OAAO,EAAE,GAAG;gBACZ,MAAM,EAAE,CAAC;aACV,CAAA;SACF;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,UAAU;SACX;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,YAAY;YACZ,MAAM,GAAG,GAAG,IAAI,CAAA;YAChB,UAAU,CAAC,CAAC,EAAE,CAAC,GAAG;gBAChB,KAAK,EAAE,MAAM;gBACb,IAAI,EAAE,UAAU;gBAChB,IAAI,EAAE,IAAI,GAAG,EAAE;gBACf,OAAO,EAAE,GAAG;gBACZ,MAAM,EAAE,CAAC;aACV,CAAA;SACF;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,WAAW;YACX,UAAU,CAAC,CAAC,EAAE,CAAC,GAAG;gBAChB,IAAI,EAAE,UAAU;gBAChB,MAAM,EAAE,IAAI;gBACZ,KAAK,EAAE,MAAM;gBACb,IAAI,EAAE,GAAG;aACV,CAAA;SACF;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,mBAAmB;SACpB;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,yBAAyB;SAC1B;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,yBAAyB;SAC1B;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,yEAAyE;YACzE,gCAAgC;YAChC,MAAM,EAAE,CAAA;SACT;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,uBAAuB;SACxB;KACF;IAED,IAAI,MAAM,IAAI,MAAM,GAAG,CAAC,EAAE;QACxB,UAAU,CAAC,CAAC,EAAE,CAAC,GAAG;YAChB,KAAK,EAAE,MAAM;YACb,IAAI,EAAE,WAAW;YACjB,IAAI,EAAE,GAAG,MAAM,EAAE;YACjB,MAAM,EAAE,CAAC;SACV,CAAA;QACD,MAAM,GAAG,CAAC,CAAA;KACX;IAED,OAAO,UAAU,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAA;AAC/B,CAAC;AAlHD,4DAkHC;AAED,SAAgB,mBAAmB,CACjC,YAA0B,EAC1B,cAAsB,EACtB,OAAe,EACf,SAA0C;IAE1C,IAAI,GAAG,GAAG,EAAE,CAAA;IACZ,IAAI,KAAK,GAAG,EAAE,CAAA;IACd,IAAI,EAAE,GAAG,GAAG,CAAA;IACZ,IAAI,KAAK,GAAG,CAAC,CAAA;IACb,IAAI,CAAC,SAAS,EAAE;QACd,OAAO,EAAE,CAAA;KACV;IAED,yCAAyC;IACzC,MAAM,GAAG,GAAG,SAAS,CAAC,GAAG,CAAA;IACzB,MAAM,QAAQ,GAAG,SAAS,CAAC,KAAK,CAAA;IAChC,IAAI,OAAO,GAAG,cAAc,CAAA;IAC5B,IAAI,MAAM,GAAG,CAAC,CAAA;IACd,IAAI,MAAM,GAAG,CAAC,CAAA;IACd,IAAI,YAAY,KAAK,SAAS,EAAE;QAC9B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,YAAY,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;YAC5C,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,GAAG,EAAE,IAAI,EAAE,GAAG,YAAY,CAAC,CAAC,CAAC,CAAA;YACnD,MAAM,GAAG,MAAM,GAAG,OAAO,CAAA;YACzB,GAAG,IAAI,GAAG,CAAC,
|
|
1
|
+
{"version":3,"file":"util.js","sourceRoot":"","sources":["../../src/CramAdapter/util.ts"],"names":[],"mappings":";;;AAeA,SAAgB,wBAAwB,CACtC,YAA0B,EAC1B,KAAa,EACb,IAAsB;IAEtB,IAAI,CAAC,YAAY,EAAE;QACjB,OAAO,EAAE,CAAA;KACV;IACD,MAAM,UAAU,GAAe,IAAI,KAAK,CAAC,YAAY,CAAC,MAAM,CAAC,CAAA;IAC7D,IAAI,CAAC,GAAG,CAAC,CAAA;IACT,IAAI,MAAM,GAAG,CAAC,CAAA;IACd,IAAI,MAAM,GAAG,CAAC,CAAA;IACd,IAAI,MAAM,GAAG,CAAC,CAAA;IACd,IAAI,OAAO,GAAG,KAAK,CAAA;IAEnB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,YAAY,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;QAC5C,MAAM,CAAC,GAAG,YAAY,CAAC,CAAC,CAAC,CAAA;QACzB,MAAM,EAAE,IAAI,EAAE,GAAG,EAAE,IAAI,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC,CAAA;QACvC,MAAM,GAAG,MAAM,GAAG,OAAO,CAAA;QACzB,OAAO,GAAG,MAAM,CAAA;QAEhB,IAAI,MAAM,IAAI,MAAM,GAAG,CAAC,EAAE;YACxB,UAAU,CAAC,CAAC,EAAE,CAAC,GAAG;gBAChB,KAAK,EAAE,MAAM;gBACb,IAAI,EAAE,WAAW;gBACjB,IAAI,EAAE,GAAG,MAAM,EAAE;gBACjB,MAAM,EAAE,CAAC;aACV,CAAA;YACD,MAAM,GAAG,CAAC,CAAA;SACX;QACD,MAAM,GAAG,CAAC,CAAC,MAAM,GAAG,CAAC,GAAG,KAAK,CAAA;QAE7B,IAAI,IAAI,KAAK,GAAG,EAAE;YAChB,eAAe;YACf,UAAU,CAAC,CAAC,EAAE,CAAC,GAAG;gBAChB,KAAK,EAAE,MAAM;gBACb,MAAM,EAAE,CAAC;gBACT,IAAI,EAAE,GAAG;gBACT,IAAI,EAAE,IAAI,aAAJ,IAAI,uBAAJ,IAAI,CAAG,GAAG,GAAG,CAAC,CAAC;gBACrB,OAAO,EAAE,GAAG,aAAH,GAAG,uBAAH,GAAG,CAAE,WAAW,EAAE;gBAC3B,IAAI,EAAE,UAAU;aACjB,CAAA;SACF;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,YAAY;YACZ,UAAU,CAAC,CAAC,EAAE,CAAC,GAAG;gBAChB,KAAK,EAAE,MAAM;gBACb,IAAI,EAAE,WAAW;gBACjB,IAAI,EAAE,GAAG,IAAI,CAAC,MAAM,EAAE;gBACtB,MAAM,EAAE,CAAC;aACV,CAAA;SACF;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,iBAAiB;YACjB,UAAU,CAAC,CAAC,EAAE,CAAC,GAAG;gBAChB,IAAI,EAAE,MAAM;gBACZ,MAAM,EAAE,IAAI;gBACZ,KAAK,EAAE,MAAM;gBACb,IAAI,EAAE,GAAG;aACV,CAAA;SACF;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,YAAY;YACZ,MAAM,GAAG,GAAG,IAAI,CAAC,MAAM,CAAA;YACvB,UAAU,CAAC,CAAC,EAAE,CAAC,GAAG;gBAChB,KAAK,EAAE,MAAM;gBACb,IAAI,EAAE,UAAU;gBAChB,IAAI,EAAE,IAAI,GAAG,EAAE;gBACf,OAAO,EAAE,GAAG;gBACZ,MAAM,EAAE,CAAC;aACV,CAAA;SACF;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,UAAU;SACX;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,YAAY;YACZ,MAAM,GAAG,GAAG,IAAI,CAAA;YAChB,UAAU,CAAC,CAAC,EAAE,CAAC,GAAG;gBAChB,KAAK,EAAE,MAAM;gBACb,IAAI,EAAE,UAAU;gBAChB,IAAI,EAAE,IAAI,GAAG,EAAE;gBACf,OAAO,EAAE,GAAG;gBACZ,MAAM,EAAE,CAAC;aACV,CAAA;SACF;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,WAAW;YACX,UAAU,CAAC,CAAC,EAAE,CAAC,GAAG;gBAChB,IAAI,EAAE,UAAU;gBAChB,MAAM,EAAE,IAAI;gBACZ,KAAK,EAAE,MAAM;gBACb,IAAI,EAAE,GAAG;aACV,CAAA;SACF;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,mBAAmB;SACpB;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,yBAAyB;SAC1B;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,yBAAyB;SAC1B;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,yEAAyE;YACzE,gCAAgC;YAChC,MAAM,EAAE,CAAA;SACT;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,uBAAuB;SACxB;KACF;IAED,IAAI,MAAM,IAAI,MAAM,GAAG,CAAC,EAAE;QACxB,UAAU,CAAC,CAAC,EAAE,CAAC,GAAG;YAChB,KAAK,EAAE,MAAM;YACb,IAAI,EAAE,WAAW;YACjB,IAAI,EAAE,GAAG,MAAM,EAAE;YACjB,MAAM,EAAE,CAAC;SACV,CAAA;QACD,MAAM,GAAG,CAAC,CAAA;KACX;IAED,OAAO,UAAU,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAA;AAC/B,CAAC;AAlHD,4DAkHC;AAED,SAAgB,mBAAmB,CACjC,YAA0B,EAC1B,cAAsB,EACtB,OAAe,EACf,SAA0C;IAE1C,IAAI,GAAG,GAAG,EAAE,CAAA;IACZ,IAAI,KAAK,GAAG,EAAE,CAAA;IACd,IAAI,EAAE,GAAG,GAAG,CAAA;IACZ,IAAI,KAAK,GAAG,CAAC,CAAA;IACb,IAAI,CAAC,SAAS,EAAE;QACd,OAAO,EAAE,CAAA;KACV;IAED,yCAAyC;IACzC,MAAM,GAAG,GAAG,SAAS,CAAC,GAAG,CAAA;IACzB,MAAM,QAAQ,GAAG,SAAS,CAAC,KAAK,CAAA;IAChC,IAAI,OAAO,GAAG,cAAc,CAAA;IAC5B,IAAI,MAAM,GAAG,CAAC,CAAA;IACd,IAAI,MAAM,GAAG,CAAC,CAAA;IACd,IAAI,YAAY,KAAK,SAAS,EAAE;QAC9B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,YAAY,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;YAC5C,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,GAAG,EAAE,IAAI,EAAE,GAAG,YAAY,CAAC,CAAC,CAAC,CAAA;YACnD,MAAM,GAAG,MAAM,GAAG,OAAO,CAAA;YACzB,GAAG,IAAI,GAAG,CAAC,KAAK,CAAC,OAAO,GAAG,QAAQ,EAAE,MAAM,GAAG,QAAQ,CAAC,CAAA;YACvD,OAAO,GAAG,MAAM,CAAA;YAEhB,IAAI,MAAM,GAAG,CAAC,IAAI,MAAM,EAAE;gBACxB,KAAK,IAAI,GAAG,MAAM,GAAG,CAAA;gBACrB,MAAM,GAAG,CAAC,CAAA;aACX;YACD,IAAI,KAAK,IAAI,EAAE,KAAK,GAAG,EAAE;gBACvB,KAAK,IAAI,GAAG,KAAK,GAAG,EAAE,EAAE,CAAA;gBACxB,KAAK,GAAG,CAAC,CAAA;aACV;YACD,IAAI,MAAM,EAAE;gBACV,EAAE,GAAG,GAAG,CAAA;gBACR,KAAK,IAAI,MAAM,CAAA;aAChB;YAED,IAAI,IAAI,KAAK,GAAG,EAAE;gBAChB,oCAAoC;gBACpC,MAAM,GAAG,GAAG,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,CAAA;gBAC3B,MAAM,KAAK,GAAG,MAAM,CAAC,YAAY,CAAC,GAAG,GAAG,CAAC,CAAA;gBACzC,GAAG,IAAI,KAAK,CAAA;gBACZ,OAAO,IAAI,KAAK,CAAC,MAAM,CAAA;gBACvB,KAAK,IAAI,KAAK,CAAC,MAAM,CAAA;aACtB;iBAAM,IAAI,IAAI,KAAK,GAAG,EAAE;gBACvB,6BAA6B;gBAC7B,GAAG,IAAI,GAAG,CAAA;gBACV,OAAO,EAAE,CAAA;gBACT,KAAK,EAAE,CAAA;aACR;iBAAM,IAAI,IAAI,KAAK,GAAG,EAAE;gBACvB,eAAe;gBACf,GAAG,IAAI,GAAG,CAAA;gBACV,OAAO,EAAE,CAAA;gBACT,KAAK,EAAE,CAAA;aACR;iBAAM,IAAI,IAAI,KAAK,GAAG,IAAI,IAAI,KAAK,GAAG,EAAE;gBACvC,uBAAuB;gBACvB,OAAO,IAAI,IAAI,CAAA;gBACf,IAAI,KAAK,EAAE;oBACT,KAAK,IAAI,GAAG,KAAK,GAAG,EAAE,EAAE,CAAA;iBACzB;gBACD,KAAK,IAAI,IAAI,GAAG,IAAI,CAAA;gBACpB,KAAK,GAAG,CAAC,CAAA;aACV;iBAAM,IAAI,IAAI,KAAK,GAAG,IAAI,IAAI,KAAK,GAAG,EAAE;gBACvC,yBAAyB;gBACzB,GAAG,IAAI,IAAI,CAAA;gBACX,IAAI,KAAK,EAAE;oBACT,KAAK,IAAI,GAAG,KAAK,GAAG,EAAE,EAAE,CAAA;iBACzB;gBACD,KAAK,IAAI,IAAI,CAAC,MAAM,GAAG,IAAI,CAAA;gBAC3B,KAAK,GAAG,CAAC,CAAA;aACV;iBAAM,IAAI,IAAI,KAAK,GAAG,EAAE;gBACvB,wBAAwB;gBACxB,cAAc;gBACd,IAAI,KAAK,EAAE;oBACT,KAAK,IAAI,GAAG,KAAK,GAAG,EAAE,EAAE,CAAA;iBACzB;gBACD,MAAM,EAAE,CAAA;gBACR,GAAG,IAAI,IAAI,CAAA;gBACX,KAAK,GAAG,CAAC,CAAA;aACV;iBAAM,IAAI,IAAI,KAAK,GAAG,EAAE;gBACvB,UAAU;gBACV,IAAI,KAAK,EAAE;oBACT,KAAK,IAAI,GAAG,KAAK,GAAG,EAAE,EAAE,CAAA;iBACzB;gBACD,KAAK,IAAI,GAAG,IAAI,GAAG,CAAA;aACpB;iBAAM,IAAI,IAAI,KAAK,GAAG,EAAE;gBACvB,YAAY;gBACZ,IAAI,KAAK,EAAE;oBACT,KAAK,IAAI,GAAG,KAAK,GAAG,EAAE,EAAE,CAAA;iBACzB;gBACD,KAAK,IAAI,GAAG,IAAI,GAAG,CAAA;gBACnB,KAAK,GAAG,CAAC,CAAA;aACV,CAAC,cAAc;SACjB;KACF;SAAM;QACL,MAAM,GAAG,OAAO,GAAG,GAAG,CAAC,MAAM,CAAA;KAC9B;IACD,IAAI,GAAG,CAAC,MAAM,KAAK,OAAO,EAAE;QAC1B,MAAM,GAAG,OAAO,GAAG,GAAG,CAAC,MAAM,CAAA;QAC7B,GAAG,IAAI,GAAG,CAAC,KAAK,CAAC,OAAO,GAAG,QAAQ,EAAE,OAAO,GAAG,QAAQ,GAAG,MAAM,CAAC,CAAA;QAEjE,IAAI,KAAK,IAAI,EAAE,KAAK,GAAG,EAAE;YACvB,KAAK,IAAI,GAAG,KAAK,GAAG,EAAE,EAAE,CAAA;YACxB,KAAK,GAAG,CAAC,CAAA;SACV;QACD,EAAE,GAAG,GAAG,CAAA;QACR,KAAK,IAAI,MAAM,CAAA;KAChB;IACD,IAAI,MAAM,IAAI,MAAM,GAAG,CAAC,EAAE;QACxB,KAAK,IAAI,GAAG,MAAM,GAAG,CAAA;KACtB;IACD,IAAI,KAAK,EAAE;QACT,KAAK,IAAI,GAAG,KAAK,GAAG,EAAE,EAAE,CAAA;KACzB;IAED,OAAO,KAAK,CAAA;AACd,CAAC;AAvHD,kDAuHC"}
|
|
@@ -8,13 +8,13 @@ const mobx_react_1 = require("mobx-react");
|
|
|
8
8
|
const mui_1 = require("tss-react/mui");
|
|
9
9
|
const configuration_1 = require("@jbrowse/core/configuration");
|
|
10
10
|
const ui_1 = require("@jbrowse/core/ui");
|
|
11
|
-
const useStyles = (0, mui_1.makeStyles)()(
|
|
11
|
+
const useStyles = (0, mui_1.makeStyles)()({
|
|
12
12
|
resizeHandle: {
|
|
13
13
|
height: 2,
|
|
14
14
|
position: 'absolute',
|
|
15
15
|
zIndex: 2,
|
|
16
16
|
},
|
|
17
|
-
})
|
|
17
|
+
});
|
|
18
18
|
function AlignmentsDisplay({ model }) {
|
|
19
19
|
const { PileupDisplay, SNPCoverageDisplay } = model;
|
|
20
20
|
const { classes } = useStyles();
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"AlignmentsDisplay.js","sourceRoot":"","sources":["../../../src/LinearAlignmentsDisplay/components/AlignmentsDisplay.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,2CAAqC;AACrC,uCAA0C;AAC1C,+DAAqD;AACrD,yCAA+C;AAK/C,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC
|
|
1
|
+
{"version":3,"file":"AlignmentsDisplay.js","sourceRoot":"","sources":["../../../src/LinearAlignmentsDisplay/components/AlignmentsDisplay.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,2CAAqC;AACrC,uCAA0C;AAC1C,+DAAqD;AACrD,yCAA+C;AAK/C,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC;IAC7B,YAAY,EAAE;QACZ,MAAM,EAAE,CAAC;QACT,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,CAAC;KACV;CACF,CAAC,CAAA;AAEF,SAAS,iBAAiB,CAAC,EAAE,KAAK,EAAqC;IACrE,MAAM,EAAE,aAAa,EAAE,kBAAkB,EAAE,GAAG,KAAK,CAAA;IACnD,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,GAAG,GAAG,kBAAkB,CAAC,MAAM,CAAA;IACrC,OAAO,CACL,sDACe,WAAW,IAAA,uBAAO,EAAC,KAAK,EAAE,WAAW,CAAC,EAAE,EACrD,KAAK,EAAE,EAAE,QAAQ,EAAE,UAAU,EAAE;QAE/B,sDAAiB,sBAAsB;YACrC,8BAAC,kBAAkB,CAAC,kBAAkB,IAAC,KAAK,EAAE,kBAAkB,GAAI,CAChE;QACN,8BAAC,iBAAY,IACX,MAAM,EAAE,KAAK,CAAC,EAAE;gBACd,kBAAkB,CAAC,SAAS,CAAC,kBAAkB,CAAC,MAAM,GAAG,KAAK,CAAC,CAAA;gBAC/D,OAAO,KAAK,CAAA;YACd,CAAC,EACD,SAAS,EAAE,OAAO,CAAC,YAAY,EAC/B,KAAK,EAAE,EAAE,GAAG,EAAE,GACd;QAEF,sDACc,iBAAiB,EAC7B,KAAK,EAAE;gBACL,QAAQ,EAAE,UAAU;gBACpB,GAAG;aACJ;YAED,8BAAC,aAAa,CAAC,kBAAkB,IAAC,KAAK,EAAE,aAAa,GAAI,CACtD,CACF,CACP,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,iBAAiB,CAAC,CAAA"}
|
|
@@ -18,6 +18,13 @@ function configModelFactory(pm) {
|
|
|
18
18
|
*/
|
|
19
19
|
snpCoverageDisplay: pm.getDisplayType('LinearSNPCoverageDisplay')
|
|
20
20
|
.configSchema,
|
|
21
|
+
/**
|
|
22
|
+
* #slot
|
|
23
|
+
*/
|
|
24
|
+
height: {
|
|
25
|
+
type: 'number',
|
|
26
|
+
defaultValue: 250,
|
|
27
|
+
},
|
|
21
28
|
}, {
|
|
22
29
|
/**
|
|
23
30
|
* #baseConfiguration
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../../src/LinearAlignmentsDisplay/models/configSchema.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AACjE,kFAAkF;AAGlF;;;;GAIG;AACH,SAAwB,kBAAkB,CAAC,EAAiB;IAC1D,OAAO,IAAA,mCAAmB,EACxB,yBAAyB,EACzB;QACE;;WAEG;QACH,aAAa,EAAE,EAAE,CAAC,cAAc,CAAC,qBAAqB,CAAC,CAAC,YAAY;QAEpE;;WAEG;QACH,kBAAkB,EAAE,EAAE,CAAC,cAAc,CAAC,0BAA0B,CAAC;aAC9D,YAAY;
|
|
1
|
+
{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../../src/LinearAlignmentsDisplay/models/configSchema.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AACjE,kFAAkF;AAGlF;;;;GAIG;AACH,SAAwB,kBAAkB,CAAC,EAAiB;IAC1D,OAAO,IAAA,mCAAmB,EACxB,yBAAyB,EACzB;QACE;;WAEG;QACH,aAAa,EAAE,EAAE,CAAC,cAAc,CAAC,qBAAqB,CAAC,CAAC,YAAY;QAEpE;;WAEG;QACH,kBAAkB,EAAE,EAAE,CAAC,cAAc,CAAC,0BAA0B,CAAC;aAC9D,YAAY;QAEf;;WAEG;QACH,MAAM,EAAE;YACN,IAAI,EAAE,QAAQ;YACd,YAAY,EAAE,GAAG;SAClB;KACF,EACD;QACE;;WAEG;QACH,iBAAiB,EAAE,yDAA6B;QAChD,eAAe,EAAE,IAAI;KACtB,CACF,CAAA;AACH,CAAC;AA/BD,qCA+BC"}
|
|
@@ -17,7 +17,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
|
|
|
17
17
|
snpCovHeight: import("mobx-state-tree").IType<number | undefined, number, number>;
|
|
18
18
|
type: import("mobx-state-tree").ISimpleType<"LinearAlignmentsDisplay">;
|
|
19
19
|
configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
|
|
20
|
-
|
|
20
|
+
heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
21
21
|
userFeatureScreenDensity: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
22
22
|
lowerPanelType: import("mobx-state-tree").IType<string | undefined, string, string>;
|
|
23
23
|
}, {
|
|
@@ -58,9 +58,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
|
|
|
58
58
|
}, {
|
|
59
59
|
rendererTypeName: string;
|
|
60
60
|
error: unknown;
|
|
61
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
62
|
-
* #property
|
|
63
|
-
*/
|
|
61
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
64
62
|
}> | null;
|
|
65
63
|
readonly adapterConfig: any;
|
|
66
64
|
readonly parentTrack: any;
|
|
@@ -85,6 +83,11 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
|
|
|
85
83
|
* #action
|
|
86
84
|
*/
|
|
87
85
|
setSNPCoverageHeight(n: number): void;
|
|
86
|
+
} & {
|
|
87
|
+
/**
|
|
88
|
+
* #getter
|
|
89
|
+
*/
|
|
90
|
+
readonly height: any;
|
|
88
91
|
} & {
|
|
89
92
|
/**
|
|
90
93
|
* #getter
|
|
@@ -152,7 +155,20 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
|
|
|
152
155
|
* #method
|
|
153
156
|
*/
|
|
154
157
|
trackMenuItems(): MenuItem[];
|
|
155
|
-
}, import("mobx-state-tree").
|
|
158
|
+
}, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
|
|
159
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
160
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
161
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
162
|
+
} & {
|
|
163
|
+
PileupDisplay: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IAnyType>;
|
|
164
|
+
SNPCoverageDisplay: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IAnyModelType>;
|
|
165
|
+
snpCovHeight: import("mobx-state-tree").IType<number | undefined, number, number>;
|
|
166
|
+
type: import("mobx-state-tree").ISimpleType<"LinearAlignmentsDisplay">;
|
|
167
|
+
configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
|
|
168
|
+
heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
169
|
+
userFeatureScreenDensity: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
170
|
+
lowerPanelType: import("mobx-state-tree").IType<string | undefined, string, string>;
|
|
171
|
+
}>>, import("mobx-state-tree")._NotCustomized>;
|
|
156
172
|
export default stateModelFactory;
|
|
157
173
|
export type AlignmentsDisplayStateModel = ReturnType<typeof stateModelFactory>;
|
|
158
174
|
export type AlignmentsDisplayModel = Instance<AlignmentsDisplayStateModel>;
|
|
@@ -14,9 +14,9 @@ const minDisplayHeight = 20;
|
|
|
14
14
|
function getLowerPanelDisplays(pluginManager) {
|
|
15
15
|
return (pluginManager
|
|
16
16
|
.getDisplayElements()
|
|
17
|
-
// @ts-
|
|
17
|
+
// @ts-expect-error
|
|
18
18
|
.filter(f => { var _a; return ((_a = f.subDisplay) === null || _a === void 0 ? void 0 : _a.type) === 'LinearAlignmentsDisplay'; })
|
|
19
|
-
// @ts-
|
|
19
|
+
// @ts-expect-error
|
|
20
20
|
.filter(f => { var _a; return (_a = f.subDisplay) === null || _a === void 0 ? void 0 : _a.lowerPanel; }));
|
|
21
21
|
}
|
|
22
22
|
function deepSnap(x1, x2) {
|
|
@@ -54,7 +54,6 @@ function AlignmentsModel(pluginManager, configSchema) {
|
|
|
54
54
|
* #property
|
|
55
55
|
* refers to LinearPileupDisplay sub-display model
|
|
56
56
|
*/
|
|
57
|
-
// @ts-ignore
|
|
58
57
|
PileupDisplay: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.union(...lowerPanelDisplays)),
|
|
59
58
|
/**
|
|
60
59
|
* #property
|
|
@@ -76,7 +75,7 @@ function AlignmentsModel(pluginManager, configSchema) {
|
|
|
76
75
|
/**
|
|
77
76
|
* #property
|
|
78
77
|
*/
|
|
79
|
-
|
|
78
|
+
heightPreConfig: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.number),
|
|
80
79
|
/**
|
|
81
80
|
* #property
|
|
82
81
|
*/
|
|
@@ -110,6 +109,15 @@ function stateModelFactory(pluginManager, configSchema) {
|
|
|
110
109
|
setSNPCoverageHeight(n) {
|
|
111
110
|
self.snpCovHeight = n;
|
|
112
111
|
},
|
|
112
|
+
}))
|
|
113
|
+
.views(self => ({
|
|
114
|
+
/**
|
|
115
|
+
* #getter
|
|
116
|
+
*/
|
|
117
|
+
get height() {
|
|
118
|
+
var _a;
|
|
119
|
+
return (_a = self.heightPreConfig) !== null && _a !== void 0 ? _a : (0, configuration_1.getConf)(self, 'height');
|
|
120
|
+
},
|
|
113
121
|
}))
|
|
114
122
|
.views(self => ({
|
|
115
123
|
/**
|
|
@@ -196,8 +204,8 @@ function stateModelFactory(pluginManager, configSchema) {
|
|
|
196
204
|
* #action
|
|
197
205
|
*/
|
|
198
206
|
setHeight(n) {
|
|
199
|
-
self.
|
|
200
|
-
return self.
|
|
207
|
+
self.heightPreConfig = Math.max(n, minDisplayHeight);
|
|
208
|
+
return self.heightPreConfig;
|
|
201
209
|
},
|
|
202
210
|
/**
|
|
203
211
|
* #action
|
|
@@ -288,6 +296,14 @@ function stateModelFactory(pluginManager, configSchema) {
|
|
|
288
296
|
];
|
|
289
297
|
},
|
|
290
298
|
};
|
|
299
|
+
})
|
|
300
|
+
.preProcessSnapshot(snap => {
|
|
301
|
+
if (!snap) {
|
|
302
|
+
return snap;
|
|
303
|
+
}
|
|
304
|
+
// @ts-expect-error
|
|
305
|
+
const { height, ...rest } = snap;
|
|
306
|
+
return { heightPreConfig: height, ...rest };
|
|
291
307
|
});
|
|
292
308
|
}
|
|
293
309
|
exports.default = stateModelFactory;
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"model.js","sourceRoot":"","sources":["../../../src/LinearAlignmentsDisplay/models/model.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,+BAAoC;AACpC,qDAOwB;AACxB,sEAAuC;AAEvC,UAAU;AACV,+DAKoC;AACpC,uEAAwE;AAIxE,MAAM,gBAAgB,GAAG,EAAE,CAAA;AAE3B,SAAS,qBAAqB,CAAC,aAA4B;IACzD,OAAO,CACL,aAAa;SACV,kBAAkB,EAAE;QACrB,
|
|
1
|
+
{"version":3,"file":"model.js","sourceRoot":"","sources":["../../../src/LinearAlignmentsDisplay/models/model.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,+BAAoC;AACpC,qDAOwB;AACxB,sEAAuC;AAEvC,UAAU;AACV,+DAKoC;AACpC,uEAAwE;AAIxE,MAAM,gBAAgB,GAAG,EAAE,CAAA;AAE3B,SAAS,qBAAqB,CAAC,aAA4B;IACzD,OAAO,CACL,aAAa;SACV,kBAAkB,EAAE;QACrB,mBAAmB;SAClB,MAAM,CAAC,CAAC,CAAC,EAAE,WAAC,OAAA,CAAA,MAAA,CAAC,CAAC,UAAU,0CAAE,IAAI,MAAK,yBAAyB,CAAA,EAAA,CAAC;QAC9D,mBAAmB;SAClB,MAAM,CAAC,CAAC,CAAC,EAAE,WAAC,OAAA,MAAA,CAAC,CAAC,UAAU,0CAAE,UAAU,CAAA,EAAA,CAAC,CACzC,CAAA;AACH,CAAC;AAED,SAAS,QAAQ,CACf,EAAK,EACL,EAAK;IAEL,OAAO,IAAA,yBAAS,EACd,EAAE,CAAC,CAAC,CAAC,IAAA,6BAAW,EAAC,EAAE,CAAC,CAAC,CAAC,CAAC,SAAS,EAChC,EAAE,CAAC,CAAC,CAAC,IAAA,6BAAW,EAAC,EAAE,CAAC,CAAC,CAAC,CAAC,SAAS,CACjC,CAAA;AACH,CAAC;AAED,SAAS,QAAQ,CAAC,IAA4B;IAC5C,MAAM,EAAE,aAAa,EAAE,kBAAkB,EAAE,GAAG,IAAI,CAAA;IAClD,OAAO,CACL,aAAa;QACb,IAAA,yBAAO,EAAC,aAAa,CAAC;QACtB,kBAAkB;QAClB,IAAA,yBAAO,EAAC,kBAAkB,CAAC,CAC5B,CAAA;AACH,CAAC;AAED,SAAS,gBAAgB,CAAC,IAA4B;IACpD,MAAM,EAAE,aAAa,EAAE,kBAAkB,EAAE,GAAG,IAAI,CAAA;IAClD,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,IAAI,CAAC,aAAa,CAAC,OAAO,EAAE;QAC7C,OAAM;KACP;IACD,IAAI,CAAC,QAAQ,CAAC,aAAa,CAAC,OAAO,EAAE,kBAAkB,CAAC,OAAO,CAAC,EAAE;QAChE,kBAAkB,CAAC,UAAU,CAAC,IAAA,6BAAW,EAAC,aAAa,CAAC,OAAO,CAAC,CAAC,CAAA;KAClE;AACH,CAAC;AAED,SAAS,iBAAiB,CAAC,IAA4B;IACrD,MAAM,EAAE,aAAa,EAAE,kBAAkB,EAAE,GAAG,IAAI,CAAA;IAClD,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,IAAI,CAAC,aAAa,CAAC,QAAQ,EAAE;QAC9C,OAAM;KACP;IACD,IAAI,CAAC,QAAQ,CAAC,aAAa,CAAC,QAAQ,EAAE,kBAAkB,CAAC,QAAQ,CAAC,EAAE;QAClE,kBAAkB,CAAC,WAAW,CAAC,IAAA,6BAAW,EAAC,aAAa,CAAC,QAAQ,CAAC,CAAC,CAAA;KACpE;AACH,CAAC;AAED,SAAS,eAAe,CACtB,aAA4B,EAC5B,YAAwC;IAExC,MAAM,kBAAkB,GAAG,qBAAqB,CAAC,aAAa,CAAC,CAAC,GAAG,CACjE,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,UAAU,CAClB,CAAA;IAED,OAAO,uBAAK,CAAC,KAAK,CAAC;QACjB;;;WAGG;QACH,aAAa,EAAE,uBAAK,CAAC,KAAK,CAAC,uBAAK,CAAC,KAAK,CAAC,GAAG,kBAAkB,CAAC,CAAC;QAC9D;;;WAGG;QACH,kBAAkB,EAAE,uBAAK,CAAC,KAAK,CAC7B,aAAa,CAAC,cAAc,CAAC,0BAA0B,CAAC,CAAC,UAAU,CACpE;QACD;;WAEG;QACH,YAAY,EAAE,EAAE;QAChB;;WAEG;QACH,IAAI,EAAE,uBAAK,CAAC,OAAO,CAAC,yBAAyB,CAAC;QAC9C;;WAEG;QACH,aAAa,EAAE,IAAA,sCAAsB,EAAC,YAAY,CAAC;QACnD;;WAEG;QACH,eAAe,EAAE,uBAAK,CAAC,KAAK,CAAC,uBAAK,CAAC,MAAM,CAAC;QAC1C;;WAEG;QACH,wBAAwB,EAAE,uBAAK,CAAC,KAAK,CAAC,uBAAK,CAAC,MAAM,CAAC;QACnD;;WAEG;QACH,cAAc,EAAE,qBAAqB;KACtC,CAAC,CAAA;AACJ,CAAC;AAED;;;GAGG;AACH,SAAS,iBAAiB,CACxB,aAA4B,EAC5B,YAAwC;IAExC,OAAO,uBAAK;SACT,OAAO,CACN,yBAAyB,EACzB,oBAAW,EACX,eAAe,CAAC,aAAa,EAAE,YAAY,CAAC,CAC7C;SACA,QAAQ,CAAC,GAAG,EAAE,CAAC,CAAC;QACf,SAAS,EAAE,CAAC;KACb,CAAC,CAAC;SACF,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB;;WAEG;QACH,YAAY,CAAC,SAAiB;YAC5B,IAAI,CAAC,SAAS,GAAG,SAAS,CAAA;QAC5B,CAAC;QAED;;WAEG;QACH,oBAAoB,CAAC,CAAS;YAC5B,IAAI,CAAC,YAAY,GAAG,CAAC,CAAA;QACvB,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd;;WAEG;QACH,IAAI,MAAM;;YACR,OAAO,MAAA,IAAI,CAAC,eAAe,mCAAI,IAAA,uBAAO,EAAC,IAAI,EAAE,QAAQ,CAAC,CAAA;QACxD,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd;;WAEG;QACH,IAAI,UAAU;YACZ,MAAM,IAAI,GAAG,IAAA,uBAAO,EAAC,IAAI,EAAE,eAAe,CAAC,CAAA;YAC3C,OAAO;gBACL,GAAG,IAAI;gBACP,IAAI,EAAE,IAAI,CAAC,cAAc;gBACzB,SAAS,EAAE,GAAG,IAAI,CAAC,aAAa,CAAC,SAAS,IAAI,IAAI,CAAC,cAAc,MAAM,EAAE,yEAAyE;aACnJ,CAAA;QACH,CAAC;QAED;;WAEG;QACH,cAAc,CAAC,QAAgB,EAAE,EAAU;YACzC,OAAO,IAAI,CAAC,aAAa,CAAC,cAAc,CAAC,QAAQ,EAAE,EAAE,CAAC,CAAA;QACxD,CAAC;QACD;;WAEG;QACH,iBAAiB,CAAC,EAAU;YAC1B,OAAO,IAAI,CAAC,aAAa,CAAC,iBAAiB,CAAC,EAAE,CAAC,CAAA;QACjD,CAAC;QAED;;WAEG;QACH,IAAI,QAAQ;YACV,OAAO,IAAI,CAAC,aAAa,CAAC,QAAQ,CAAA;QACpC,CAAC;QAED;;WAEG;QACH,IAAI,YAAY;;YACd,OAAO,MAAA,IAAI,CAAC,aAAa,0CAAE,YAAY,CAAA;QACzC,CAAC;QAED;;WAEG;QACH,IAAI,QAAQ;YACV,OAAO,IAAI,CAAC,aAAa,CAAC,QAAQ,CAAA;QACpC,CAAC;QAED;;WAEG;QACH,IAAI,YAAY;YACd,MAAM,IAAI,GAAG,IAAA,uBAAO,EAAC,IAAI,EAAE,oBAAoB,CAAC,CAAA;YAChD,OAAO;gBACL,GAAG,IAAI;gBACP,SAAS,EAAE,GAAG,IAAI,CAAC,aAAa,CAAC,SAAS,kBAAkB,EAAE,yEAAyE;aACxI,CAAA;QACH,CAAC;KACF,CAAC,CAAC;SACF,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB;;WAEG;QACH,qBAAqB,CAAC,aAAoC;YACxD,IAAI,CAAC,kBAAkB,GAAG;gBACxB,IAAI,EAAE,0BAA0B;gBAChC,aAAa;gBACb,MAAM,EAAE,IAAI,CAAC,YAAY;aAC1B,CAAA;QACH,CAAC;QACD;;WAEG;QACH,gBAAgB,CAAC,KAAc;YAC7B,IAAI,CAAC,aAAa,CAAC,gBAAgB,CAAC,KAAK,CAAC,CAAA;YAC1C,IAAI,CAAC,kBAAkB,CAAC,gBAAgB,CAAC,KAAK,CAAC,CAAA;QACjD,CAAC;QAED;;WAEG;QACH,gBAAgB,CAAC,aAAoC;YACnD,IAAI,CAAC,aAAa,GAAG;gBACnB,IAAI,EAAE,aAAa,CAAC,IAAI,IAAI,qBAAqB;gBACjD,aAAa;aACd,CAAA;QACH,CAAC;QACD;;WAEG;QACH,SAAS,CAAC,CAAS;YACjB,IAAI,CAAC,eAAe,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,gBAAgB,CAAC,CAAA;YACpD,OAAO,IAAI,CAAC,eAAe,CAAA;QAC7B,CAAC;QACD;;WAEG;QACH,iBAAiB,CAAC,IAAY;YAC5B,IAAI,CAAC,cAAc,GAAG,IAAI,CAAA;QAC5B,CAAC;QACD;;WAEG;QACH,YAAY,CAAC,QAAgB;YAC3B,MAAM,SAAS,GAAG,IAAI,CAAC,MAAM,CAAA;YAC7B,MAAM,SAAS,GAAG,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,MAAM,GAAG,QAAQ,CAAC,CAAA;YACxD,OAAO,SAAS,GAAG,SAAS,CAAA;QAC9B,CAAC;KACF,CAAC,CAAC;SACF,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB,WAAW;YACT,IAAA,6BAAW,EACT,IAAI,EACJ,IAAA,cAAO,EAAC,GAAG,EAAE;gBACX,MAAM,EACJ,kBAAkB,EAClB,aAAa,EACb,YAAY,EACZ,UAAU,GACX,GAAG,IAAI,CAAA;gBAER,IAAI,CAAC,kBAAkB,EAAE;oBACvB,IAAI,CAAC,qBAAqB,CAAC,YAAY,CAAC,CAAA;iBACzC;qBAAM,IACL,CAAC,IAAA,yBAAS,EACR,YAAY,EACZ,IAAA,6BAAW,EAAC,kBAAkB,CAAC,aAAa,CAAC,CAC9C,EACD;oBACA,kBAAkB,CAAC,SAAS,CAAC,IAAI,CAAC,YAAY,CAAC,CAAA;oBAC/C,kBAAkB,CAAC,SAAS,CAAC,IAAI,CAAC,YAAY,CAAC,CAAA;iBAChD;gBAED,IAAI,CAAC,aAAa,IAAI,IAAI,CAAC,cAAc,KAAK,aAAa,CAAC,IAAI,EAAE;oBAChE,IAAI,CAAC,gBAAgB,CAAC,UAAU,CAAC,CAAA;iBAClC;qBAAM,IACL,CAAC,IAAA,yBAAS,EAAC,UAAU,EAAE,IAAA,6BAAW,EAAC,aAAa,CAAC,aAAa,CAAC,CAAC,EAChE;oBACA,aAAa,CAAC,SAAS,CAAC,IAAI,CAAC,UAAU,CAAC,CAAA;iBACzC;gBAED,gBAAgB,CAAC,IAA8B,CAAC,CAAA;gBAChD,iBAAiB,CAAC,IAA8B,CAAC,CAAA;YACnD,CAAC,CAAC,CACH,CAAA;YAED,IAAA,6BAAW,EACT,IAAI,EACJ,IAAA,cAAO,EAAC,GAAG,EAAE;gBACX,IAAI,CAAC,oBAAoB,CAAC,IAAI,CAAC,kBAAkB,CAAC,MAAM,CAAC,CAAA;YAC3D,CAAC,CAAC,CACH,CAAA;YAED,IAAA,6BAAW,EACT,IAAI,EACJ,IAAA,cAAO,EAAC,GAAG,EAAE;gBACX,IAAI,CAAC,aAAa,CAAC,SAAS,CAC1B,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,kBAAkB,CAAC,MAAM,CAC7C,CAAA;YACH,CAAC,CAAC,CACH,CAAA;QACH,CAAC;QACD;;WAEG;QACH,KAAK,CAAC,SAAS,CAAC,IAAmC;YACjD,MAAM,YAAY,GAAG,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,kBAAkB,CAAC,MAAM,CAAA;YACjE,MAAM,IAAA,WAAI,EAAC,GAAG,EAAE,CAAC,IAAI,CAAC,aAAa,CAAC,KAAK,CAAC,CAAA;YAC1C,OAAO,CACL;gBACE,yCAAI,MAAM,IAAI,CAAC,kBAAkB,CAAC,SAAS,CAAC,IAAI,CAAC,CAAK;gBACtD,qCAAG,SAAS,EAAE,eAAe,IAAI,CAAC,kBAAkB,CAAC,MAAM,GAAG,IAC3D,MAAM,IAAI,CAAC,aAAa,CAAC,SAAS,CAAC;oBAClC,GAAG,IAAI;oBACP,cAAc,EAAE,YAAY;iBAC7B,CAAC,CACA,CACH,CACJ,CAAA;QACH,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE;QACZ,MAAM,EAAE,cAAc,EAAE,mBAAmB,EAAE,GAAG,IAAI,CAAA;QACpD,OAAO;YACL;;eAEG;YACH,cAAc;gBACZ,MAAM,KAAK,GAAG,qBAAqB,CAAC,aAAa,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;oBAC3D,IAAI,EAAE,OAAO;oBACb,KAAK,EAAE,CAAC,CAAC,WAAW;oBACpB,OAAO,EAAE,CAAC,CAAC,IAAI,KAAK,IAAI,CAAC,aAAa,CAAC,IAAI;oBAC3C,OAAO,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,iBAAiB,CAAC,CAAC,CAAC,IAAI,CAAC;iBAC9C,CAAC,CAAC,CAAA;gBACH,OAAO;oBACL,GAAG,mBAAmB,EAAE;oBACxB;wBACE,IAAI,EAAE,SAAS;wBACf,KAAK,EAAE,iBAAiB;wBACxB,OAAO,EAAE,IAAI,CAAC,aAAa,CAAC,cAAc,EAAE;qBAC7C;oBACD;wBACE,IAAI,EAAE,SAAS;wBACf,KAAK,EAAE,sBAAsB;wBAC7B,OAAO,EAAE,IAAI,CAAC,kBAAkB,CAAC,cAAc,EAAE;qBAClD;oBACD;wBACE,IAAI,EAAE,SAAS;wBACf,KAAK,EAAE,6BAA6B;wBACpC,OAAO,EAAE,KAAK;qBACf;iBACF,CAAA;YACH,CAAC;SACF,CAAA;IACH,CAAC,CAAC;SACD,kBAAkB,CAAC,IAAI,CAAC,EAAE;QACzB,IAAI,CAAC,IAAI,EAAE;YACT,OAAO,IAAI,CAAA;SACZ;QACD,mBAAmB;QACnB,MAAM,EAAE,MAAM,EAAE,GAAG,IAAI,EAAE,GAAG,IAAI,CAAA;QAChC,OAAO,EAAE,eAAe,EAAE,MAAM,EAAE,GAAG,IAAI,EAAE,CAAA;IAC7C,CAAC,CAAC,CAAA;AACN,CAAC;AAED,kBAAe,iBAAiB,CAAA"}
|
|
@@ -1,5 +1,4 @@
|
|
|
1
|
-
import configSchemaFactory from './configSchema';
|
|
2
|
-
import modelFactory from './model';
|
|
3
1
|
import PluginManager from '@jbrowse/core/PluginManager';
|
|
4
2
|
export default function register(pluginManager: PluginManager): void;
|
|
5
|
-
export {
|
|
3
|
+
export { default as linearPileupDisplayStateModelFactory } from './model';
|
|
4
|
+
export { default as linearPileupDisplayConfigSchemaFactory } from './configSchema';
|
|
@@ -5,9 +5,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
|
5
5
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
6
|
exports.linearPileupDisplayConfigSchemaFactory = exports.linearPileupDisplayStateModelFactory = void 0;
|
|
7
7
|
const configSchema_1 = __importDefault(require("./configSchema"));
|
|
8
|
-
exports.linearPileupDisplayConfigSchemaFactory = configSchema_1.default;
|
|
9
8
|
const model_1 = __importDefault(require("./model"));
|
|
10
|
-
exports.linearPileupDisplayStateModelFactory = model_1.default;
|
|
11
9
|
const DisplayType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/DisplayType"));
|
|
12
10
|
const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
|
|
13
11
|
function register(pluginManager) {
|
|
@@ -26,4 +24,8 @@ function register(pluginManager) {
|
|
|
26
24
|
});
|
|
27
25
|
}
|
|
28
26
|
exports.default = register;
|
|
27
|
+
var model_2 = require("./model");
|
|
28
|
+
Object.defineProperty(exports, "linearPileupDisplayStateModelFactory", { enumerable: true, get: function () { return __importDefault(model_2).default; } });
|
|
29
|
+
var configSchema_2 = require("./configSchema");
|
|
30
|
+
Object.defineProperty(exports, "linearPileupDisplayConfigSchemaFactory", { enumerable: true, get: function () { return __importDefault(configSchema_2).default; } });
|
|
29
31
|
//# sourceMappingURL=index.js.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LinearPileupDisplay/index.ts"],"names":[],"mappings":";;;;;;AAAA,kEAAgD;
|
|
1
|
+
{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LinearPileupDisplay/index.ts"],"names":[],"mappings":";;;;;;AAAA,kEAAgD;AAChD,oDAAkC;AAClC,kGAAyE;AAEzE,kFAA+E;AAE/E,SAAwB,QAAQ,CAAC,aAA4B;IAC3D,aAAa,CAAC,cAAc,CAAC,GAAG,EAAE;QAChC,MAAM,YAAY,GAAG,IAAA,sBAAmB,EAAC,aAAa,CAAC,CAAA;QACvD,OAAO,IAAI,qBAAW,CAAC;YACrB,IAAI,EAAE,qBAAqB;YAC3B,WAAW,EAAE,gBAAgB;YAC7B,YAAY;YACZ,UAAU,EAAE,IAAA,eAAY,EAAC,YAAY,CAAC;YACtC,UAAU,EAAE,EAAE,IAAI,EAAE,yBAAyB,EAAE,UAAU,EAAE,IAAI,EAAE;YACjE,SAAS,EAAE,iBAAiB;YAC5B,QAAQ,EAAE,kBAAkB;YAC5B,cAAc,EAAE,sDAA0B;SAC3C,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC;AAdD,2BAcC;AAED,iCAAyE;AAAhE,8IAAA,OAAO,OAAwC;AACxD,+CAAkF;AAAzE,uJAAA,OAAO,OAA0C"}
|