@jbrowse/plugin-alignments 2.3.4 → 2.4.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/LinearAlignmentsDisplay/models/configSchema.js +7 -0
- package/dist/LinearAlignmentsDisplay/models/configSchema.js.map +1 -1
- package/dist/LinearAlignmentsDisplay/models/model.d.ts +24 -6
- package/dist/LinearAlignmentsDisplay/models/model.js +20 -3
- package/dist/LinearAlignmentsDisplay/models/model.js.map +1 -1
- package/dist/LinearPileupDisplay/model.d.ts +75 -12
- package/dist/LinearReadArcsDisplay/components/ReactComponent.js +14 -11
- package/dist/LinearReadArcsDisplay/components/ReactComponent.js.map +1 -1
- package/dist/LinearReadArcsDisplay/model.d.ts +78 -29
- package/dist/LinearReadArcsDisplay/model.js +16 -4
- package/dist/LinearReadArcsDisplay/model.js.map +1 -1
- package/dist/LinearReadCloudDisplay/model.d.ts +72 -20
- package/dist/LinearReadCloudDisplay/model.js +15 -3
- package/dist/LinearReadCloudDisplay/model.js.map +1 -1
- package/dist/LinearSNPCoverageDisplay/models/model.d.ts +9 -14
- package/dist/PileupRenderer/PileupRenderer.js +2 -4
- package/dist/PileupRenderer/PileupRenderer.js.map +1 -1
- package/esm/LinearAlignmentsDisplay/models/configSchema.js +7 -0
- package/esm/LinearAlignmentsDisplay/models/configSchema.js.map +1 -1
- package/esm/LinearAlignmentsDisplay/models/model.d.ts +24 -6
- package/esm/LinearAlignmentsDisplay/models/model.js +20 -3
- package/esm/LinearAlignmentsDisplay/models/model.js.map +1 -1
- package/esm/LinearPileupDisplay/model.d.ts +75 -12
- package/esm/LinearReadArcsDisplay/components/ReactComponent.js +14 -11
- package/esm/LinearReadArcsDisplay/components/ReactComponent.js.map +1 -1
- package/esm/LinearReadArcsDisplay/model.d.ts +78 -29
- package/esm/LinearReadArcsDisplay/model.js +16 -4
- package/esm/LinearReadArcsDisplay/model.js.map +1 -1
- package/esm/LinearReadCloudDisplay/model.d.ts +72 -20
- package/esm/LinearReadCloudDisplay/model.js +15 -3
- package/esm/LinearReadCloudDisplay/model.js.map +1 -1
- package/esm/LinearSNPCoverageDisplay/models/model.d.ts +9 -14
- package/esm/PileupRenderer/PileupRenderer.js +2 -4
- package/esm/PileupRenderer/PileupRenderer.js.map +1 -1
- package/package.json +2 -2
- package/src/AlignmentsFeatureDetail/__snapshots__/index.test.tsx.snap +13 -13
- package/src/LinearAlignmentsDisplay/models/configSchema.ts +8 -0
- package/src/LinearAlignmentsDisplay/models/model.tsx +19 -3
- package/src/LinearReadArcsDisplay/components/ReactComponent.tsx +14 -12
- package/src/LinearReadArcsDisplay/model.tsx +23 -5
- package/src/LinearReadCloudDisplay/model.tsx +23 -7
- package/src/MismatchParser/index.ts +3 -3
- package/src/PileupRenderer/PileupRenderer.ts +2 -4
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@@ -12,7 +12,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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} & {
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heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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}, {
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type: string;
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} & Partial<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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} & {
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heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
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region: import("mobx-state-tree").IModelType<{
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refName: import("mobx-state-tree").ISimpleType<string>;
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end: import("mobx-state-tree").ISimpleType<number>;
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reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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} & {
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assemblyName: import("mobx-state-tree").ISimpleType<string>;
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}, {
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setRefName(newRefName: string): void;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
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reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
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isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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}, {
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renderInProgress: AbortController | undefined;
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|
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filled: boolean;
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|
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reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
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|
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features: Map<string, Feature> | undefined;
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layout: any;
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status: string;
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error: unknown;
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message: string | undefined;
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maxHeightReached: boolean;
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ReactComponent: ({ model, }: {
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model: any;
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+
}) => any;
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renderProps: any;
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} & {
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doReload(): void;
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|
+
afterAttach(): void;
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|
+
setStatus(message: string): void;
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|
+
setLoading(abortController: AbortController): void;
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|
+
setMessage(messageText: string): void;
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|
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setRendered(props: {
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|
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reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
|
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|
+
features: Map<string, Feature>;
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|
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layout: any;
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|
+
maxHeightReached: boolean;
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|
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|
+
renderProps: any;
|
|
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|
+
} | undefined): void;
|
|
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|
+
setError(error: unknown): void;
|
|
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|
+
reload(): void;
|
|
480
|
+
beforeDestroy(): void;
|
|
481
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
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|
+
userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
483
|
+
userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
484
|
+
}>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, {
|
|
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|
type: string;
|
|
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|
-
height: number; /**
|
|
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|
-
* #action
|
|
425
|
-
*/
|
|
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486
|
id: string;
|
|
427
487
|
rpcDriverName: string | undefined;
|
|
428
|
-
|
|
488
|
+
heightPreConfig: number | undefined;
|
|
489
|
+
userBpPerPxLimit: number | undefined; /**
|
|
490
|
+
* #method
|
|
491
|
+
*/
|
|
429
492
|
userByteSizeLimit: number | undefined;
|
|
430
493
|
} & import("mobx-state-tree")._NotCustomized>;
|
|
431
494
|
export type LinearPileupDisplayStateModel = ReturnType<typeof stateModelFactory>;
|
|
@@ -5,17 +5,20 @@ import { observer } from 'mobx-react';
|
|
|
5
5
|
import { getContainingView } from '@jbrowse/core/util';
|
|
6
6
|
import { LoadingEllipses } from '@jbrowse/core/ui';
|
|
7
7
|
import { BlockMsg, } from '@jbrowse/plugin-linear-genome-view';
|
|
8
|
-
const useStyles = makeStyles()(theme =>
|
|
9
|
-
|
|
10
|
-
|
|
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|
-
|
|
12
|
-
|
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|
-
|
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|
-
|
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|
-
|
|
16
|
-
|
|
17
|
-
|
|
18
|
-
|
|
8
|
+
const useStyles = makeStyles()(theme => {
|
|
9
|
+
const bg = theme.palette.action.disabledBackground;
|
|
10
|
+
return {
|
|
11
|
+
loading: {
|
|
12
|
+
paddingLeft: '0.6em',
|
|
13
|
+
backgroundColor: theme.palette.background.default,
|
|
14
|
+
backgroundImage: `repeating-linear-gradient(45deg, transparent, transparent 5px, ${bg} 5px, ${bg} 10px)`,
|
|
15
|
+
height: '100%',
|
|
16
|
+
width: '100%',
|
|
17
|
+
pointerEvents: 'none',
|
|
18
|
+
textAlign: 'center',
|
|
19
|
+
},
|
|
20
|
+
};
|
|
21
|
+
});
|
|
19
22
|
const Arcs = observer(function ({ model, }) {
|
|
20
23
|
const view = getContainingView(model);
|
|
21
24
|
return (React.createElement("canvas", { "data-testid": `Arc-display-${model.drawn}`, ref: ref => {
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"ReactComponent.js","sourceRoot":"","sources":["../../../src/LinearReadArcsDisplay/components/ReactComponent.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,OAAO,EAAE,MAAM,iBAAiB,CAAA;AACzC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AACtD,OAAO,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAA;AAClD,OAAO,EACL,QAAQ,GAET,MAAM,oCAAoC,CAAA;AAO3C,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;
|
|
1
|
+
{"version":3,"file":"ReactComponent.js","sourceRoot":"","sources":["../../../src/LinearReadArcsDisplay/components/ReactComponent.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,OAAO,EAAE,MAAM,iBAAiB,CAAA;AACzC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AACtD,OAAO,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAA;AAClD,OAAO,EACL,QAAQ,GAET,MAAM,oCAAoC,CAAA;AAO3C,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE;IACrC,MAAM,EAAE,GAAG,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,kBAAkB,CAAA;IAClD,OAAO;QACL,OAAO,EAAE;YACP,WAAW,EAAE,OAAO;YACpB,eAAe,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,OAAO;YACjD,eAAe,EAAE,kEAAkE,EAAE,SAAS,EAAE,QAAQ;YACxG,MAAM,EAAE,MAAM;YACd,KAAK,EAAE,MAAM;YACb,aAAa,EAAE,MAAM;YACrB,SAAS,EAAE,QAAQ;SACpB;KACF,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,IAAI,GAAG,QAAQ,CAAC,UAAU,EAC9B,KAAK,GAGN;IACC,MAAM,IAAI,GAAG,iBAAiB,CAAC,KAAK,CAAQ,CAAA;IAC5C,OAAO,CACL,+CACe,eAAe,KAAK,CAAC,KAAK,EAAE,EACzC,GAAG,EAAE,GAAG,CAAC,EAAE;YACT,IAAI,OAAO,CAAC,KAAK,CAAC,EAAE;gBAClB,KAAK,CAAC,MAAM,CAAC,GAAG,CAAC,CAAA;aAClB;QACH,CAAC,EACD,KAAK,EAAE;YACL,QAAQ,EAAE,UAAU;YACpB,IAAI,EAAE,CAAC,IAAI,CAAC,QAAQ,GAAG,KAAK,CAAC,iBAAiB;YAC9C,KAAK,EAAE,IAAI,CAAC,aAAa,CAAC,YAAY;YACtC,MAAM,EAAE,KAAK,CAAC,MAAM;SACrB,EACD,KAAK,EAAE,IAAI,CAAC,aAAa,CAAC,YAAY,GAAG,CAAC,EAC1C,MAAM,EAAE,KAAK,CAAC,MAAM,GAAG,CAAC,GACxB,CACH,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,QAAQ,CAAC,UAAU,EAChC,KAAK,GAGN;IACC,MAAM,IAAI,GAAG,iBAAiB,CAAC,KAAK,CAAC,CAAA;IACrC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,GAAG,GAAG,KAAK,CAAC,KAAK,CAAA;IACvB,OAAO,GAAG,CAAC,CAAC,CAAC,CACX,oBAAC,QAAQ,IACP,OAAO,EAAE,GAAG,GAAG,EAAE,EACjB,QAAQ,EAAC,OAAO,EAChB,UAAU,EAAE,QAAQ,EACpB,MAAM,EAAE,KAAK,CAAC,MAAM,GACpB,CACH,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,CAClB,6BACE,SAAS,EAAE,OAAO,CAAC,OAAO,EAC1B,KAAK,EAAE;YACL,KAAK,EAAE,IAAI,CAAC,aAAa,CAAC,YAAY;YACtC,MAAM,EAAE,EAAE;YACV,QAAQ,EAAE,UAAU;YACpB,IAAI,EAAE,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,IAAI,CAAC,QAAQ,CAAC;SAClC;QAED,oBAAC,eAAe,IAAC,OAAO,EAAE,KAAK,CAAC,OAAO,GAAI,CACvC,CACP,CAAC,CAAC,CAAC,CACF,oBAAC,IAAI,IAAC,KAAK,EAAE,KAAK,GAAI,CACvB,CAAA;AACH,CAAC,CAAC,CAAA"}
|
|
@@ -2,7 +2,6 @@ import React from 'react';
|
|
|
2
2
|
import { Instance } from 'mobx-state-tree';
|
|
3
3
|
import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
|
|
4
4
|
import { ChainData } from '../shared/fetchChains';
|
|
5
|
-
import { ExportSvgOptions } from '@jbrowse/plugin-linear-genome-view/src/LinearGenomeView';
|
|
6
5
|
interface Filter {
|
|
7
6
|
flagInclude: number;
|
|
8
7
|
flagExclude: number;
|
|
@@ -21,9 +20,12 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
|
|
|
21
20
|
type: import("mobx-state-tree").ISimpleType<string>;
|
|
22
21
|
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
23
22
|
} & {
|
|
24
|
-
|
|
23
|
+
heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
25
24
|
blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
|
|
26
25
|
key: import("mobx-state-tree").ISimpleType<string>;
|
|
26
|
+
/**
|
|
27
|
+
* #property
|
|
28
|
+
*/
|
|
27
29
|
region: import("mobx-state-tree").IModelType<{
|
|
28
30
|
refName: import("mobx-state-tree").ISimpleType<string>;
|
|
29
31
|
start: import("mobx-state-tree").ISimpleType<number>;
|
|
@@ -52,28 +54,21 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
|
|
|
52
54
|
}) => any;
|
|
53
55
|
renderProps: any;
|
|
54
56
|
} & {
|
|
55
|
-
doReload(): void;
|
|
56
|
-
* #action
|
|
57
|
-
*/
|
|
57
|
+
doReload(): void;
|
|
58
58
|
afterAttach(): void;
|
|
59
59
|
setStatus(message: string): void;
|
|
60
60
|
setLoading(abortController: AbortController): void;
|
|
61
61
|
setMessage(messageText: string): void;
|
|
62
62
|
setRendered(props: {
|
|
63
63
|
reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>>;
|
|
64
|
-
features: Map<string, import("@jbrowse/core/util").Feature>;
|
|
65
|
-
* #action
|
|
66
|
-
*/
|
|
64
|
+
features: Map<string, import("@jbrowse/core/util").Feature>;
|
|
67
65
|
layout: any;
|
|
68
66
|
maxHeightReached: boolean;
|
|
69
67
|
renderProps: any;
|
|
70
68
|
} | undefined): void;
|
|
71
69
|
setError(error: unknown): void;
|
|
72
70
|
reload(): void;
|
|
73
|
-
beforeDestroy(): void;
|
|
74
|
-
* #action
|
|
75
|
-
* used during tests to detect when we can complete a snapshot test
|
|
76
|
-
*/
|
|
71
|
+
beforeDestroy(): void;
|
|
77
72
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
78
73
|
userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
79
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type: import("mobx-state-tree").ISimpleType<"LinearReadArcsDisplay">;
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filterBy: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
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tagFilter: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IModelType<{
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@@ -134,7 +127,9 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>; /**
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error: unknown;
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@@ -161,6 +156,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
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estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
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estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
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setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
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setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
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setHeight(displayHeight: number):
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setHeight(displayHeight: number): any;
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resizeHeight(distance: number): number;
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setScrollTop(scrollTop: number): void;
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updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
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}[];
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renderProps(): any;
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renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
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overrideHeight: number;
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loading: boolean;
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trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
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label: string;
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icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
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* used during tests to detect when we can complete a snapshot test
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};
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onClick: () => void;
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subMenu?: undefined;
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} | {
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label: string;
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icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
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subMenu: {
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renderSvg(opts:
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renderSvg(opts: {
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rasterizeLayers?: boolean;
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}): Promise<JSX.Element | undefined>;
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} & {
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afterAttach(): void;
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},
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}, {
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type: string;
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} & Partial<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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} & {
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heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
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key: import("mobx-state-tree").ISimpleType<string>;
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region: import("mobx-state-tree").IModelType<{
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refName: import("mobx-state-tree").ISimpleType<string>;
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start: import("mobx-state-tree").ISimpleType<number>;
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end: import("mobx-state-tree").ISimpleType<number>;
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reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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} & {
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assemblyName: import("mobx-state-tree").ISimpleType<string>;
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}, {
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setRefName(newRefName: string): void;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
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reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
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isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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}, {
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renderInProgress: AbortController | undefined;
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filled: boolean;
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reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
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features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
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layout: any;
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status: string;
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error: unknown;
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message: string | undefined;
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maxHeightReached: boolean;
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+
ReactComponent: ({ model, }: {
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model: any;
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}) => any;
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renderProps: any;
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} & {
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doReload(): void;
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afterAttach(): void;
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setStatus(message: string): void;
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setLoading(abortController: AbortController): void;
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setMessage(messageText: string): void;
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setRendered(props: {
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reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>>;
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+
features: Map<string, import("@jbrowse/core/util").Feature>;
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layout: any;
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+
maxHeightReached: boolean;
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+
renderProps: any;
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+
} | undefined): void;
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+
setError(error: unknown): void;
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+
reload(): void;
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+
beforeDestroy(): void;
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+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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+
userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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+
}>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, {
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type: string;
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-
height: number;
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id: string;
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rpcDriverName: string | undefined;
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+
heightPreConfig: number | undefined;
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userBpPerPxLimit: number | undefined;
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userByteSizeLimit: number | undefined;
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} & import("mobx-state-tree")._NotCustomized>;
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@@ -13,6 +13,11 @@ import drawFeats from './drawFeats';
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13
13
|
import { fetchChains } from '../shared/fetchChains';
|
|
14
14
|
// async
|
|
15
15
|
const FilterByTagDlg = lazy(() => import('../shared/FilterByTag'));
|
|
16
|
+
// stabilize clipid under test for snapshot
|
|
17
|
+
function getId(id) {
|
|
18
|
+
const isJest = typeof jest === 'undefined';
|
|
19
|
+
return `arc-clip-${isJest ? id : 'jest'}`;
|
|
20
|
+
}
|
|
16
21
|
/**
|
|
17
22
|
* #stateModel LinearReadArcsDisplay
|
|
18
23
|
* extends `BaseLinearDisplay`
|
|
@@ -303,11 +308,18 @@ function stateModelFactory(configSchema) {
|
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|
303
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|
const C2S = await import('canvas2svg');
|
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304
309
|
const ctx = new C2S.default(width, height);
|
|
305
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|
await drawFeats(self, ctx);
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306
|
-
|
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307
|
-
|
|
308
|
-
|
|
311
|
+
const clipid = getId(self.id);
|
|
312
|
+
str = (React.createElement(React.Fragment, null,
|
|
313
|
+
React.createElement("defs", null,
|
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314
|
+
React.createElement("clipPath", { id: clipid },
|
|
315
|
+
React.createElement("rect", { x: 0, y: 0, width: width, height: height }))),
|
|
316
|
+
React.createElement("g", {
|
|
317
|
+
/* eslint-disable-next-line react/no-danger */
|
|
318
|
+
dangerouslySetInnerHTML: {
|
|
319
|
+
__html: ctx.getSvg().innerHTML,
|
|
320
|
+
}, clipPath: `url(#${clipid})` })));
|
|
309
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|
}
|
|
310
|
-
return React.createElement(
|
|
322
|
+
return React.createElement(React.Fragment, null, str);
|
|
311
323
|
},
|
|
312
324
|
}))
|
|
313
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|
.actions(self => ({
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/LinearReadArcsDisplay/model.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,IAAI,EAAE,MAAM,OAAO,CAAA;AACnC,OAAO,EAAE,OAAO,EAAE,MAAM,MAAM,CAAA;AAC9B,OAAO,EAAE,WAAW,EAAE,IAAI,EAAE,KAAK,EAAY,MAAM,iBAAiB,CAAA;AACpE,OAAO,EAEL,sBAAsB,EACtB,mBAAmB,EACnB,OAAO,GACR,MAAM,6BAA6B,CAAA;AACpC,OAAO,EAAE,UAAU,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AAElE,OAAO,EACL,iBAAiB,GAElB,MAAM,oCAAoC,CAAA;AAE3C,QAAQ;AACR,OAAO,WAAW,MAAM,6BAA6B,CAAA;AACrD,OAAO,cAAc,MAAM,8BAA8B,CAAA;AAEzD,SAAS;AACT,OAAO,EAAE,WAAW,EAAE,MAAM,WAAW,CAAA;AACvC,OAAO,SAAS,MAAM,aAAa,CAAA;AACnC,OAAO,EAAE,WAAW,EAAa,MAAM,uBAAuB,CAAA;
|
|
1
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+
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