@jbrowse/plugin-alignments 2.2.2 → 2.3.1

package/esm/LinearAlignmentsDisplay/models/model.d.ts

@@ -1,8 +1,8 @@
 import React from 'react';
+import { Instance, IStateTreeNode } from 'mobx-state-tree';
 import { AnyConfigurationModel, AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
 import PluginManager from '@jbrowse/core/PluginManager';
 import { MenuItem } from '@jbrowse/core/ui';
-import { Instance } from 'mobx-state-tree';
 /**
  * #stateModel LinearAlignmentsDisplay
  * extends `BaseDisplay`
@@ -12,15 +12,14 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     type: import("mobx-state-tree").ISimpleType<string>;
     rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
 } & {
-    PileupDisplay: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IAnyModelType>;
+    PileupDisplay: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IAnyType>;
     SNPCoverageDisplay: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IAnyModelType>;
     snpCovHeight: import("mobx-state-tree").IType<number | undefined, number, number>;
     type: import("mobx-state-tree").ISimpleType<"LinearAlignmentsDisplay">;
     configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
     height: import("mobx-state-tree").IType<number | undefined, number, number>;
-    showCoverage: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    showPileup: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
     userFeatureScreenDensity: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+    lowerPanelType: import("mobx-state-tree").IType<string | undefined, string, string>;
 }, {
     rendererTypeName: string;
     error: unknown;
@@ -33,11 +32,9 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
             rendererTypeName: string;
             error: unknown;
-        } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
+        } & IStateTreeNode<import("mobx-state-tree").IModelType<{
             id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-            type: import("mobx-state-tree").ISimpleType<string>; /**
-             * #property
-             */
+            type: import("mobx-state-tree").ISimpleType<string>;
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         }, {
             rendererTypeName: string;
@@ -54,16 +51,16 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
             rendererTypeName: string;
             error: unknown;
-        } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>; /**
-             * #action
-             */
+        } & IStateTreeNode<import("mobx-state-tree").IModelType<{
+            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             type: import("mobx-state-tree").ISimpleType<string>;
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         }, {
             rendererTypeName: string;
             error: unknown;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>; /**
+         * #property
+         */
     }> | null;
     readonly adapterConfig: any;
     readonly parentTrack: any;
@@ -80,14 +77,6 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
 } & {
     scrollTop: number;
 } & {
-    /**
-     * #action
-     */
-    toggleCoverage(): void;
-    /**
-     * #action
-     */
-    togglePileup(): void;
     /**
      * #action
      */
@@ -100,7 +89,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     /**
      * #getter
      */
-    readonly pileupDisplayConfig: any;
+    readonly pileupConf: any;
     /**
      * #method
      */
@@ -124,19 +113,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     /**
      * #getter
      */
-    readonly sortedByPosition: any;
-    /**
-     * #getter
-     */
-    readonly sortedByRefName: any;
-    /**
-     * #getter
-     */
-    readonly snpCoverageDisplayConfig: any;
-    /**
-     * #method
-     */
-    trackMenuItems(): MenuItem[];
+    readonly coverageConf: any;
 } & {
     /**
      * #action
@@ -153,7 +130,11 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     /**
      * #action
      */
-    setHeight(displayHeight: number): number;
+    setHeight(n: number): number;
+    /**
+     * #action
+     */
+    setLowerPanelType(type: string): void;
     /**
      * #action
      */
@@ -166,6 +147,11 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     renderSvg(opts: {
         rasterizeLayers?: boolean;
     }): Promise<JSX.Element>;
+} & {
+    /**
+     * #method
+     */
+    trackMenuItems(): MenuItem[];
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
 export default stateModelFactory;
 export type AlignmentsDisplayStateModel = ReturnType<typeof stateModelFactory>;

package/esm/LinearAlignmentsDisplay/models/model.js

@@ -1,23 +1,56 @@
 import React from 'react';
-import { ConfigurationReference, getConf, } from '@jbrowse/core/configuration';
-import { BaseDisplay } from '@jbrowse/core/pluggableElementTypes/models';
 import { autorun, when } from 'mobx';
-import { addDisposer, getSnapshot, types } from 'mobx-state-tree';
-import { getContainingTrack } from '@jbrowse/core/util';
+import { addDisposer, getSnapshot, isAlive, types, } from 'mobx-state-tree';
 import deepEqual from 'fast-deep-equal';
+// jbrowse
+import { ConfigurationReference, getConf, } from '@jbrowse/core/configuration';
+import { BaseDisplay } from '@jbrowse/core/pluggableElementTypes/models';
 const minDisplayHeight = 20;
-/**
- * #stateModel LinearAlignmentsDisplay
- * extends `BaseDisplay`
- */
-function stateModelFactory(pluginManager, configSchema) {
-    return types
-        .compose('LinearAlignmentsDisplay', BaseDisplay, types.model({
+function getLowerPanelDisplays(pluginManager) {
+    return (pluginManager
+        .getDisplayElements()
+        // @ts-ignore
+        .filter(f => { var _a; return ((_a = f.subDisplay) === null || _a === void 0 ? void 0 : _a.type) === 'LinearAlignmentsDisplay'; })
+        // @ts-ignore
+        .filter(f => { var _a; return (_a = f.subDisplay) === null || _a === void 0 ? void 0 : _a.lowerPanel; }));
+}
+function deepSnap(x1, x2) {
+    return deepEqual(x1 ? getSnapshot(x1) : undefined, x2 ? getSnapshot(x2) : undefined);
+}
+function preCheck(self) {
+    const { PileupDisplay, SNPCoverageDisplay } = self;
+    return (PileupDisplay ||
+        isAlive(PileupDisplay) ||
+        SNPCoverageDisplay ||
+        isAlive(SNPCoverageDisplay));
+}
+function propagateColorBy(self) {
+    const { PileupDisplay, SNPCoverageDisplay } = self;
+    if (!preCheck(self) || !PileupDisplay.colorBy) {
+        return;
+    }
+    if (!deepSnap(PileupDisplay.colorBy, SNPCoverageDisplay.colorBy)) {
+        SNPCoverageDisplay.setColorBy(getSnapshot(PileupDisplay.colorBy));
+    }
+}
+function propagateFilterBy(self) {
+    const { PileupDisplay, SNPCoverageDisplay } = self;
+    if (!preCheck(self) || !PileupDisplay.filterBy) {
+        return;
+    }
+    if (!deepSnap(PileupDisplay.filterBy, SNPCoverageDisplay.filterBy)) {
+        SNPCoverageDisplay.setFilterBy(getSnapshot(PileupDisplay.filterBy));
+    }
+}
+function AlignmentsModel(pluginManager, configSchema) {
+    const lowerPanelDisplays = getLowerPanelDisplays(pluginManager).map(f => f.stateModel);
+    return types.model({
         /**
          * #property
          * refers to LinearPileupDisplay sub-display model
          */
-        PileupDisplay: types.maybe(pluginManager.getDisplayType('LinearPileupDisplay').stateModel),
+        // @ts-ignore
+        PileupDisplay: types.maybe(types.union(...lowerPanelDisplays)),
         /**
          * #property
          * refers to LinearSNPCoverageDisplay sub-display model
@@ -42,16 +75,20 @@ function stateModelFactory(pluginManager, configSchema) {
         /**
          * #property
          */
-        showCoverage: true,
-        /**
-         * #property
-         */
-        showPileup: true,
+        userFeatureScreenDensity: types.maybe(types.number),
         /**
          * #property
          */
-        userFeatureScreenDensity: types.maybe(types.number),
-    }))
+        lowerPanelType: 'LinearPileupDisplay',
+    });
+}
+/**
+ * #stateModel LinearAlignmentsDisplay
+ * extends `BaseDisplay`
+ */
+function stateModelFactory(pluginManager, configSchema) {
+    return types
+        .compose('LinearAlignmentsDisplay', BaseDisplay, AlignmentsModel(pluginManager, configSchema))
         .volatile(() => ({
         scrollTop: 0,
     }))
@@ -59,120 +96,70 @@ function stateModelFactory(pluginManager, configSchema) {
         /**
          * #action
          */
-        toggleCoverage() {
-            self.showCoverage = !self.showCoverage;
+        setScrollTop(scrollTop) {
+            self.scrollTop = scrollTop;
         },
         /**
          * #action
          */
-        togglePileup() {
-            self.showPileup = !self.showPileup;
+        setSNPCoverageHeight(n) {
+            self.snpCovHeight = n;
         },
+    }))
+        .views(self => ({
         /**
-         * #action
+         * #getter
          */
-        setScrollTop(scrollTop) {
-            self.scrollTop = scrollTop;
+        get pileupConf() {
+            const conf = getConf(self, 'pileupDisplay');
+            return {
+                ...conf,
+                type: self.lowerPanelType,
+                displayId: `${self.configuration.displayId}_${self.lowerPanelType}_xyz`, // xyz to avoid someone accidentally naming the displayId similar to this
+            };
         },
         /**
-         * #action
+         * #method
          */
-        setSNPCoverageHeight(n) {
-            self.snpCovHeight = n;
+        getFeatureByID(blockKey, id) {
+            return self.PileupDisplay.getFeatureByID(blockKey, id);
+        },
+        /**
+         * #method
+         */
+        searchFeatureByID(id) {
+            return self.PileupDisplay.searchFeatureByID(id);
+        },
+        /**
+         * #getter
+         */
+        get features() {
+            return self.PileupDisplay.features;
+        },
+        /**
+         * #getter
+         */
+        get DisplayBlurb() {
+            var _a;
+            return (_a = self.PileupDisplay) === null || _a === void 0 ? void 0 : _a.DisplayBlurb;
+        },
+        /**
+         * #getter
+         */
+        get sortedBy() {
+            return self.PileupDisplay.sortedBy;
+        },
+        /**
+         * #getter
+         */
+        get coverageConf() {
+            const conf = getConf(self, 'snpCoverageDisplay');
+            return {
+                ...conf,
+                displayId: `${self.configuration.displayId}_snpcoverage_xyz`, // xyz to avoid someone accidentally naming the displayId similar to this
+            };
         },
     }))
-        .views(self => {
-        const { trackMenuItems: superTrackMenuItems } = self;
-        return {
-            /**
-             * #getter
-             */
-            get pileupDisplayConfig() {
-                const conf = getConf(self, 'pileupDisplay');
-                const track = getContainingTrack(self);
-                return {
-                    ...conf,
-                    type: 'LinearPileupDisplay',
-                    name: `${getConf(track, 'name')} pileup`,
-                    displayId: `${self.configuration.displayId}_pileup_xyz`, // xyz to avoid someone accidentally naming the displayId similar to this
-                };
-            },
-            /**
-             * #method
-             */
-            getFeatureByID(blockKey, id) {
-                return self.PileupDisplay.getFeatureByID(blockKey, id);
-            },
-            /**
-             * #method
-             */
-            searchFeatureByID(id) {
-                return self.PileupDisplay.searchFeatureByID(id);
-            },
-            /**
-             * #getter
-             */
-            get features() {
-                return self.PileupDisplay.features;
-            },
-            /**
-             * #getter
-             */
-            get DisplayBlurb() {
-                var _a;
-                return (_a = self.PileupDisplay) === null || _a === void 0 ? void 0 : _a.DisplayBlurb;
-            },
-            /**
-             * #getter
-             */
-            get sortedBy() {
-                return self.PileupDisplay.sortedBy;
-            },
-            /**
-             * #getter
-             */
-            get sortedByPosition() {
-                return self.PileupDisplay.sortedByPosition;
-            },
-            /**
-             * #getter
-             */
-            get sortedByRefName() {
-                return self.PileupDisplay.sortedByRefName;
-            },
-            /**
-             * #getter
-             */
-            get snpCoverageDisplayConfig() {
-                const conf = getConf(self, 'snpCoverageDisplay');
-                const track = getContainingTrack(self);
-                return {
-                    ...conf,
-                    type: 'LinearSNPCoverageDisplay',
-                    name: `${getConf(track, 'name')} snp coverage`,
-                    displayId: `${self.configuration.displayId}_snpcoverage_xyz`, // xyz to avoid someone accidentally naming the displayId similar to this
-                };
-            },
-            /**
-             * #method
-             */
-            trackMenuItems() {
-                return [
-                    ...superTrackMenuItems(),
-                    {
-                        type: 'subMenu',
-                        label: 'Pileup settings',
-                        subMenu: self.PileupDisplay.trackMenuItems(),
-                    },
-                    {
-                        type: 'subMenu',
-                        label: 'SNPCoverage settings',
-                        subMenu: self.SNPCoverageDisplay.trackMenuItems(),
-                    },
-                ];
-            },
-        };
-    })
         .actions(self => ({
         /**
          * #action
@@ -196,22 +183,23 @@ function stateModelFactory(pluginManager, configSchema) {
          */
         setPileupDisplay(configuration) {
             self.PileupDisplay = {
-                type: 'LinearPileupDisplay',
+                type: configuration.type || 'LinearPileupDisplay',
                 configuration,
             };
         },
         /**
          * #action
          */
-        setHeight(displayHeight) {
-            if (displayHeight > minDisplayHeight) {
-                self.height = displayHeight;
-            }
-            else {
-                self.height = minDisplayHeight;
-            }
+        setHeight(n) {
+            self.height = Math.max(n, minDisplayHeight);
             return self.height;
         },
+        /**
+         * #action
+         */
+        setLowerPanelType(type) {
+            self.lowerPanelType = type;
+        },
         /**
          * #action
          */
@@ -224,36 +212,29 @@ function stateModelFactory(pluginManager, configSchema) {
         .actions(self => ({
         afterAttach() {
             addDisposer(self, autorun(() => {
-                if (!self.SNPCoverageDisplay) {
-                    self.setSNPCoverageDisplay(self.snpCoverageDisplayConfig);
+                const { SNPCoverageDisplay, PileupDisplay, coverageConf, pileupConf, } = self;
+                if (!SNPCoverageDisplay) {
+                    self.setSNPCoverageDisplay(coverageConf);
                 }
-                else if (!deepEqual(self.snpCoverageDisplayConfig, getSnapshot(self.SNPCoverageDisplay.configuration))) {
-                    self.SNPCoverageDisplay.setHeight(self.snpCovHeight);
-                    self.SNPCoverageDisplay.setConfig(self.snpCoverageDisplayConfig);
+                else if (!deepEqual(coverageConf, getSnapshot(SNPCoverageDisplay.configuration))) {
+                    SNPCoverageDisplay.setHeight(self.snpCovHeight);
+                    SNPCoverageDisplay.setConfig(self.coverageConf);
                 }
-                if (!self.PileupDisplay) {
-                    self.setPileupDisplay(self.pileupDisplayConfig);
+                if (!PileupDisplay || self.lowerPanelType !== PileupDisplay.type) {
+                    self.setPileupDisplay(pileupConf);
                 }
-                else if (!deepEqual(self.pileupDisplayConfig, getSnapshot(self.PileupDisplay.configuration))) {
-                    self.PileupDisplay.setConfig(self.pileupDisplayConfig);
-                }
-                // propagate the filterBy setting from pileupdisplay to snpcoverage
-                // note: the snpcoverage display is not able to control filterBy
-                // itself
-                if (self.PileupDisplay.filterBy &&
-                    !deepEqual(getSnapshot(self.PileupDisplay.filterBy), getSnapshot(self.SNPCoverageDisplay.filterBy))) {
-                    self.SNPCoverageDisplay.setFilterBy(getSnapshot(self.PileupDisplay.filterBy));
-                }
-                if (self.PileupDisplay.colorBy &&
-                    !deepEqual(getSnapshot(self.PileupDisplay.colorBy), self.SNPCoverageDisplay.colorBy
-                        ? getSnapshot(self.SNPCoverageDisplay.colorBy)
-                        : {})) {
-                    self.SNPCoverageDisplay.setColorBy(getSnapshot(self.PileupDisplay.colorBy));
+                else if (!deepEqual(pileupConf, getSnapshot(PileupDisplay.configuration))) {
+                    PileupDisplay.setConfig(self.pileupConf);
                 }
+                propagateColorBy(self);
+                propagateFilterBy(self);
             }));
             addDisposer(self, autorun(() => {
                 self.setSNPCoverageHeight(self.SNPCoverageDisplay.height);
             }));
+            addDisposer(self, autorun(() => {
+                self.PileupDisplay.setHeight(self.height - self.SNPCoverageDisplay.height);
+            }));
         },
         /**
          * #action
@@ -268,7 +249,41 @@ function stateModelFactory(pluginManager, configSchema) {
                     overrideHeight: pileupHeight,
                 }))));
         },
-    }));
+    }))
+        .views(self => {
+        const { trackMenuItems: superTrackMenuItems } = self;
+        return {
+            /**
+             * #method
+             */
+            trackMenuItems() {
+                const extra = getLowerPanelDisplays(pluginManager).map(d => ({
+                    type: 'radio',
+                    label: d.displayName,
+                    checked: d.name === self.PileupDisplay.type,
+                    onClick: () => self.setLowerPanelType(d.name),
+                }));
+                return [
+                    ...superTrackMenuItems(),
+                    {
+                        type: 'subMenu',
+                        label: 'Pileup settings',
+                        subMenu: self.PileupDisplay.trackMenuItems(),
+                    },
+                    {
+                        type: 'subMenu',
+                        label: 'SNPCoverage settings',
+                        subMenu: self.SNPCoverageDisplay.trackMenuItems(),
+                    },
+                    {
+                        type: 'subMenu',
+                        label: `Replace lower panel with...`,
+                        subMenu: extra,
+                    },
+                ];
+            },
+        };
+    });
 }
 export default stateModelFactory;
 //# sourceMappingURL=model.js.map

package/esm/LinearAlignmentsDisplay/models/model.js.map

@@ -1 +1 @@
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package/esm/LinearPileupDisplay/components/SetFeatureHeight.d.ts

@@ -1,8 +1,8 @@
 /// <reference types="react" />
 declare function SetFeatureHeightDlg(props: {
     model: {
-        setFeatureHeight: Function;
-        setNoSpacing: Function;
+        setFeatureHeight: (arg?: number) => void;
+        setNoSpacing: (arg?: boolean) => void;
         featureHeightSetting: number;
         noSpacing?: boolean;
     };

package/esm/LinearPileupDisplay/components/SetFeatureHeight.js

@@ -8,12 +8,10 @@ function SetFeatureHeightDlg(props) {
     const [height, setHeight] = useState(`${featureHeightSetting}`);
     const [noSpacing, setNoSpacing] = useState(noSpacingSetting);
     const ok = height !== '' && !Number.isNaN(+height);
-    return (React.createElement(Dialog, { open: true, onClose: handleClose, title: 'Set feature height' },
+    return (React.createElement(Dialog, { open: true, onClose: handleClose, title: "Set feature height" },
         React.createElement(DialogContent, null,
             React.createElement(Typography, null, "Adjust the feature height and whether there is any spacing between features. Setting feature height to 1 and removing spacing makes the display very compact."),
-            React.createElement(TextField, { value: height, helperText: "Feature height", onChange: event => {
-                    setHeight(event.target.value);
-                } }),
+            React.createElement(TextField, { value: height, helperText: "Feature height", onChange: event => setHeight(event.target.value) }),
             React.createElement(FormControlLabel, { control: React.createElement(Checkbox, { checked: !!noSpacing, onChange: () => setNoSpacing(val => !val) }), label: "Remove spacing between features in y-direction?" }),
             React.createElement(DialogActions, null,
                 React.createElement(Button, { variant: "contained", color: "primary", type: "submit", autoFocus: true, disabled: !ok, onClick: () => {

package/esm/LinearPileupDisplay/components/SetFeatureHeight.js.map

@@ -1 +1 @@
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package/esm/LinearPileupDisplay/configSchema.d.ts

@@ -1,6 +1,3 @@
-import { Instance } from 'mobx-state-tree';
 import PluginManager from '@jbrowse/core/PluginManager';
 declare function configSchemaF(pluginManager: PluginManager): import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
-export type LinearPileupDisplayConfigModel = ReturnType<typeof configSchemaF>;
-export type LinearPileupDisplayConfig = Instance<LinearPileupDisplayConfigModel>;
 export default configSchemaF;

package/esm/LinearPileupDisplay/configSchema.js.map

@@ -1 +1 @@
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+{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/LinearPileupDisplay/configSchema.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AACjE,OAAO,EAAE,qCAAqC,EAAE,MAAM,oCAAoC,CAAA;AAC1F,OAAO,EAAE,KAAK,EAAE,MAAM,iBAAiB,CAAA;AAGvC;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,SAAS,aAAa,CAAC,aAA4B;IACjD,yDAAyD;IACzD,OAAO,mBAAmB,CACxB,qBAAqB,EACrB;QACE;;WAEG;QACH,gBAAgB,EAAE;YAChB,IAAI,EAAE,YAAY;YAClB,KAAK,EAAE,KAAK,CAAC,WAAW,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,CAAC;YACjD,YAAY,EAAE,QAAQ;SACvB;QACD;;WAEG;QACH,SAAS,EAAE,mBAAmB,CAAC,wBAAwB,EAAE;YACvD,cAAc,EACZ,aAAa,CAAC,eAAe,CAAC,gBAAgB,CAAC,CAAC,YAAY;SAC/D,CAAC;QACF;;WAEG;QACH,uBAAuB,EAAE;YACvB,IAAI,EAAE,QAAQ;YACd,WAAW,EAAE,0DAA0D;YACvE,YAAY,EAAE,CAAC;SAChB;QAED;;WAEG;QACH,WAAW,EAAE;YACX,IAAI,EAAE,YAAY;YAClB,KAAK,EAAE,KAAK,CAAC,WAAW,CAAC,aAAa,EAAE;gBACtC,QAAQ;gBACR,QAAQ;gBACR,YAAY;gBACZ,0BAA0B;gBAC1B,gBAAgB;gBAChB,KAAK;aACN,CAAC;YACF,WAAW,EAAE,qBAAqB;YAClC,YAAY,EAAE,QAAQ;SACvB;KACF,EACD;QACE;;WAEG;QACH,iBAAiB,EAAE,qCAAqC,CAAC,aAAa,CAAC;QACvE,eAAe,EAAE,IAAI;KACtB,CACF,CAAA;AACH,CAAC;AAED,eAAe,aAAa,CAAA"}

package/esm/LinearPileupDisplay/index.js

@@ -7,8 +7,10 @@ export default function register(pluginManager) {
         const configSchema = configSchemaFactory(pluginManager);
         return new DisplayType({
             name: 'LinearPileupDisplay',
+            displayName: 'Pileup display',
             configSchema,
             stateModel: modelFactory(configSchema),
+            subDisplay: { type: 'LinearAlignmentsDisplay', lowerPanel: true },
             trackType: 'AlignmentsTrack',
             viewType: 'LinearGenomeView',
             ReactComponent: BaseLinearDisplayComponent,

package/esm/LinearPileupDisplay/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LinearPileupDisplay/index.ts"],"names":[],"mappings":"AAAA,OAAO,mBAAmB,MAAM,gBAAgB,CAAA;AAChD,OAAO,YAAY,MAAM,SAAS,CAAA;AAClC,OAAO,WAAW,MAAM,iDAAiD,CAAA;AAEzE,OAAO,EAAE,0BAA0B,EAAE,MAAM,oCAAoC,CAAA;AAE/E,MAAM,CAAC,OAAO,UAAU,QAAQ,CAAC,aAA4B;IAC3D,aAAa,CAAC,cAAc,CAAC,GAAG,EAAE;QAChC,MAAM,YAAY,GAAG,mBAAmB,CAAC,aAAa,CAAC,CAAA;QACvD,OAAO,IAAI,WAAW,CAAC;YACrB,IAAI,EAAE,qBAAqB;YAC3B,WAAW,EAAE,gBAAgB;YAC7B,YAAY;YACZ,UAAU,EAAE,YAAY,CAAC,YAAY,CAAC;YACtC,UAAU,EAAE,EAAE,IAAI,EAAE,yBAAyB,EAAE,UAAU,EAAE,IAAI,EAAE;YACjE,SAAS,EAAE,iBAAiB;YAC5B,QAAQ,EAAE,kBAAkB;YAC5B,cAAc,EAAE,0BAA0B;SAC3C,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC;AAED,OAAO,EACL,YAAY,IAAI,oCAAoC,EACpD,mBAAmB,IAAI,sCAAsC,GAC9D,CAAA"}