@jbrowse/plugin-alignments 2.2.1 → 2.3.0

package/dist/LinearAlignmentsDisplay/models/model.d.ts

@@ -1,8 +1,8 @@
 import React from 'react';
+import { Instance, IStateTreeNode } from 'mobx-state-tree';
 import { AnyConfigurationModel, AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
 import PluginManager from '@jbrowse/core/PluginManager';
 import { MenuItem } from '@jbrowse/core/ui';
-import { Instance } from 'mobx-state-tree';
 /**
  * #stateModel LinearAlignmentsDisplay
  * extends `BaseDisplay`
@@ -12,15 +12,14 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     type: import("mobx-state-tree").ISimpleType<string>;
     rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
 } & {
-    PileupDisplay: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IAnyModelType>;
+    PileupDisplay: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IAnyType>;
     SNPCoverageDisplay: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IAnyModelType>;
     snpCovHeight: import("mobx-state-tree").IType<number | undefined, number, number>;
     type: import("mobx-state-tree").ISimpleType<"LinearAlignmentsDisplay">;
     configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
     height: import("mobx-state-tree").IType<number | undefined, number, number>;
-    showCoverage: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    showPileup: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
     userFeatureScreenDensity: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+    lowerPanelType: import("mobx-state-tree").IType<string | undefined, string, string>;
 }, {
     rendererTypeName: string;
     error: unknown;
@@ -33,11 +32,9 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
             rendererTypeName: string;
             error: unknown;
-        } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
+        } & IStateTreeNode<import("mobx-state-tree").IModelType<{
             id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-            type: import("mobx-state-tree").ISimpleType<string>; /**
-             * #property
-             */
+            type: import("mobx-state-tree").ISimpleType<string>;
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         }, {
             rendererTypeName: string;
@@ -54,16 +51,16 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
             rendererTypeName: string;
             error: unknown;
-        } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>; /**
-             * #action
-             */
+        } & IStateTreeNode<import("mobx-state-tree").IModelType<{
+            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             type: import("mobx-state-tree").ISimpleType<string>;
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         }, {
             rendererTypeName: string;
             error: unknown;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>; /**
+         * #property
+         */
     }> | null;
     readonly adapterConfig: any;
     readonly parentTrack: any;
@@ -80,14 +77,6 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
 } & {
     scrollTop: number;
 } & {
-    /**
-     * #action
-     */
-    toggleCoverage(): void;
-    /**
-     * #action
-     */
-    togglePileup(): void;
     /**
      * #action
      */
@@ -100,7 +89,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     /**
      * #getter
      */
-    readonly pileupDisplayConfig: any;
+    readonly pileupConf: any;
     /**
      * #method
      */
@@ -124,19 +113,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     /**
      * #getter
      */
-    readonly sortedByPosition: any;
-    /**
-     * #getter
-     */
-    readonly sortedByRefName: any;
-    /**
-     * #getter
-     */
-    readonly snpCoverageDisplayConfig: any;
-    /**
-     * #method
-     */
-    trackMenuItems(): MenuItem[];
+    readonly coverageConf: any;
 } & {
     /**
      * #action
@@ -153,7 +130,11 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     /**
      * #action
      */
-    setHeight(displayHeight: number): number;
+    setHeight(n: number): number;
+    /**
+     * #action
+     */
+    setLowerPanelType(type: string): void;
     /**
      * #action
      */
@@ -166,6 +147,11 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     renderSvg(opts: {
         rasterizeLayers?: boolean;
     }): Promise<JSX.Element>;
+} & {
+    /**
+     * #method
+     */
+    trackMenuItems(): MenuItem[];
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
 export default stateModelFactory;
 export type AlignmentsDisplayStateModel = ReturnType<typeof stateModelFactory>;

package/dist/LinearAlignmentsDisplay/models/model.js

@@ -4,25 +4,58 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importDefault(require("react"));
-const configuration_1 = require("@jbrowse/core/configuration");
-const models_1 = require("@jbrowse/core/pluggableElementTypes/models");
 const mobx_1 = require("mobx");
 const mobx_state_tree_1 = require("mobx-state-tree");
-const util_1 = require("@jbrowse/core/util");
 const fast_deep_equal_1 = __importDefault(require("fast-deep-equal"));
+// jbrowse
+const configuration_1 = require("@jbrowse/core/configuration");
+const models_1 = require("@jbrowse/core/pluggableElementTypes/models");
 const minDisplayHeight = 20;
-/**
- * #stateModel LinearAlignmentsDisplay
- * extends `BaseDisplay`
- */
-function stateModelFactory(pluginManager, configSchema) {
-    return mobx_state_tree_1.types
-        .compose('LinearAlignmentsDisplay', models_1.BaseDisplay, mobx_state_tree_1.types.model({
+function getLowerPanelDisplays(pluginManager) {
+    return (pluginManager
+        .getDisplayElements()
+        // @ts-ignore
+        .filter(f => { var _a; return ((_a = f.subDisplay) === null || _a === void 0 ? void 0 : _a.type) === 'LinearAlignmentsDisplay'; })
+        // @ts-ignore
+        .filter(f => { var _a; return (_a = f.subDisplay) === null || _a === void 0 ? void 0 : _a.lowerPanel; }));
+}
+function deepSnap(x1, x2) {
+    return (0, fast_deep_equal_1.default)(x1 ? (0, mobx_state_tree_1.getSnapshot)(x1) : undefined, x2 ? (0, mobx_state_tree_1.getSnapshot)(x2) : undefined);
+}
+function preCheck(self) {
+    const { PileupDisplay, SNPCoverageDisplay } = self;
+    return (PileupDisplay ||
+        (0, mobx_state_tree_1.isAlive)(PileupDisplay) ||
+        SNPCoverageDisplay ||
+        (0, mobx_state_tree_1.isAlive)(SNPCoverageDisplay));
+}
+function propagateColorBy(self) {
+    const { PileupDisplay, SNPCoverageDisplay } = self;
+    if (!preCheck(self) || !PileupDisplay.colorBy) {
+        return;
+    }
+    if (!deepSnap(PileupDisplay.colorBy, SNPCoverageDisplay.colorBy)) {
+        SNPCoverageDisplay.setColorBy((0, mobx_state_tree_1.getSnapshot)(PileupDisplay.colorBy));
+    }
+}
+function propagateFilterBy(self) {
+    const { PileupDisplay, SNPCoverageDisplay } = self;
+    if (!preCheck(self) || !PileupDisplay.filterBy) {
+        return;
+    }
+    if (!deepSnap(PileupDisplay.filterBy, SNPCoverageDisplay.filterBy)) {
+        SNPCoverageDisplay.setFilterBy((0, mobx_state_tree_1.getSnapshot)(PileupDisplay.filterBy));
+    }
+}
+function AlignmentsModel(pluginManager, configSchema) {
+    const lowerPanelDisplays = getLowerPanelDisplays(pluginManager).map(f => f.stateModel);
+    return mobx_state_tree_1.types.model({
         /**
          * #property
          * refers to LinearPileupDisplay sub-display model
          */
-        PileupDisplay: mobx_state_tree_1.types.maybe(pluginManager.getDisplayType('LinearPileupDisplay').stateModel),
+        // @ts-ignore
+        PileupDisplay: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.union(...lowerPanelDisplays)),
         /**
          * #property
          * refers to LinearSNPCoverageDisplay sub-display model
@@ -47,16 +80,20 @@ function stateModelFactory(pluginManager, configSchema) {
         /**
          * #property
          */
-        showCoverage: true,
-        /**
-         * #property
-         */
-        showPileup: true,
+        userFeatureScreenDensity: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.number),
         /**
          * #property
          */
-        userFeatureScreenDensity: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.number),
-    }))
+        lowerPanelType: 'LinearPileupDisplay',
+    });
+}
+/**
+ * #stateModel LinearAlignmentsDisplay
+ * extends `BaseDisplay`
+ */
+function stateModelFactory(pluginManager, configSchema) {
+    return mobx_state_tree_1.types
+        .compose('LinearAlignmentsDisplay', models_1.BaseDisplay, AlignmentsModel(pluginManager, configSchema))
         .volatile(() => ({
         scrollTop: 0,
     }))
@@ -64,120 +101,70 @@ function stateModelFactory(pluginManager, configSchema) {
         /**
          * #action
          */
-        toggleCoverage() {
-            self.showCoverage = !self.showCoverage;
+        setScrollTop(scrollTop) {
+            self.scrollTop = scrollTop;
         },
         /**
          * #action
          */
-        togglePileup() {
-            self.showPileup = !self.showPileup;
+        setSNPCoverageHeight(n) {
+            self.snpCovHeight = n;
         },
+    }))
+        .views(self => ({
         /**
-         * #action
+         * #getter
          */
-        setScrollTop(scrollTop) {
-            self.scrollTop = scrollTop;
+        get pileupConf() {
+            const conf = (0, configuration_1.getConf)(self, 'pileupDisplay');
+            return {
+                ...conf,
+                type: self.lowerPanelType,
+                displayId: `${self.configuration.displayId}_${self.lowerPanelType}_xyz`, // xyz to avoid someone accidentally naming the displayId similar to this
+            };
         },
         /**
-         * #action
+         * #method
          */
-        setSNPCoverageHeight(n) {
-            self.snpCovHeight = n;
+        getFeatureByID(blockKey, id) {
+            return self.PileupDisplay.getFeatureByID(blockKey, id);
+        },
+        /**
+         * #method
+         */
+        searchFeatureByID(id) {
+            return self.PileupDisplay.searchFeatureByID(id);
+        },
+        /**
+         * #getter
+         */
+        get features() {
+            return self.PileupDisplay.features;
+        },
+        /**
+         * #getter
+         */
+        get DisplayBlurb() {
+            var _a;
+            return (_a = self.PileupDisplay) === null || _a === void 0 ? void 0 : _a.DisplayBlurb;
+        },
+        /**
+         * #getter
+         */
+        get sortedBy() {
+            return self.PileupDisplay.sortedBy;
+        },
+        /**
+         * #getter
+         */
+        get coverageConf() {
+            const conf = (0, configuration_1.getConf)(self, 'snpCoverageDisplay');
+            return {
+                ...conf,
+                displayId: `${self.configuration.displayId}_snpcoverage_xyz`, // xyz to avoid someone accidentally naming the displayId similar to this
+            };
         },
     }))
-        .views(self => {
-        const { trackMenuItems: superTrackMenuItems } = self;
-        return {
-            /**
-             * #getter
-             */
-            get pileupDisplayConfig() {
-                const conf = (0, configuration_1.getConf)(self, 'pileupDisplay');
-                const track = (0, util_1.getContainingTrack)(self);
-                return {
-                    ...conf,
-                    type: 'LinearPileupDisplay',
-                    name: `${(0, configuration_1.getConf)(track, 'name')} pileup`,
-                    displayId: `${self.configuration.displayId}_pileup_xyz`, // xyz to avoid someone accidentally naming the displayId similar to this
-                };
-            },
-            /**
-             * #method
-             */
-            getFeatureByID(blockKey, id) {
-                return self.PileupDisplay.getFeatureByID(blockKey, id);
-            },
-            /**
-             * #method
-             */
-            searchFeatureByID(id) {
-                return self.PileupDisplay.searchFeatureByID(id);
-            },
-            /**
-             * #getter
-             */
-            get features() {
-                return self.PileupDisplay.features;
-            },
-            /**
-             * #getter
-             */
-            get DisplayBlurb() {
-                var _a;
-                return (_a = self.PileupDisplay) === null || _a === void 0 ? void 0 : _a.DisplayBlurb;
-            },
-            /**
-             * #getter
-             */
-            get sortedBy() {
-                return self.PileupDisplay.sortedBy;
-            },
-            /**
-             * #getter
-             */
-            get sortedByPosition() {
-                return self.PileupDisplay.sortedByPosition;
-            },
-            /**
-             * #getter
-             */
-            get sortedByRefName() {
-                return self.PileupDisplay.sortedByRefName;
-            },
-            /**
-             * #getter
-             */
-            get snpCoverageDisplayConfig() {
-                const conf = (0, configuration_1.getConf)(self, 'snpCoverageDisplay');
-                const track = (0, util_1.getContainingTrack)(self);
-                return {
-                    ...conf,
-                    type: 'LinearSNPCoverageDisplay',
-                    name: `${(0, configuration_1.getConf)(track, 'name')} snp coverage`,
-                    displayId: `${self.configuration.displayId}_snpcoverage_xyz`, // xyz to avoid someone accidentally naming the displayId similar to this
-                };
-            },
-            /**
-             * #method
-             */
-            trackMenuItems() {
-                return [
-                    ...superTrackMenuItems(),
-                    {
-                        type: 'subMenu',
-                        label: 'Pileup settings',
-                        subMenu: self.PileupDisplay.trackMenuItems(),
-                    },
-                    {
-                        type: 'subMenu',
-                        label: 'SNPCoverage settings',
-                        subMenu: self.SNPCoverageDisplay.trackMenuItems(),
-                    },
-                ];
-            },
-        };
-    })
         .actions(self => ({
         /**
          * #action
@@ -201,22 +188,23 @@ function stateModelFactory(pluginManager, configSchema) {
          */
         setPileupDisplay(configuration) {
             self.PileupDisplay = {
-                type: 'LinearPileupDisplay',
+                type: configuration.type || 'LinearPileupDisplay',
                 configuration,
             };
         },
         /**
          * #action
          */
-        setHeight(displayHeight) {
-            if (displayHeight > minDisplayHeight) {
-                self.height = displayHeight;
-            }
-            else {
-                self.height = minDisplayHeight;
-            }
+        setHeight(n) {
+            self.height = Math.max(n, minDisplayHeight);
             return self.height;
         },
+        /**
+         * #action
+         */
+        setLowerPanelType(type) {
+            self.lowerPanelType = type;
+        },
         /**
          * #action
          */
@@ -229,36 +217,29 @@ function stateModelFactory(pluginManager, configSchema) {
         .actions(self => ({
         afterAttach() {
             (0, mobx_state_tree_1.addDisposer)(self, (0, mobx_1.autorun)(() => {
-                if (!self.SNPCoverageDisplay) {
-                    self.setSNPCoverageDisplay(self.snpCoverageDisplayConfig);
+                const { SNPCoverageDisplay, PileupDisplay, coverageConf, pileupConf, } = self;
+                if (!SNPCoverageDisplay) {
+                    self.setSNPCoverageDisplay(coverageConf);
                 }
-                else if (!(0, fast_deep_equal_1.default)(self.snpCoverageDisplayConfig, (0, mobx_state_tree_1.getSnapshot)(self.SNPCoverageDisplay.configuration))) {
-                    self.SNPCoverageDisplay.setHeight(self.snpCovHeight);
-                    self.SNPCoverageDisplay.setConfig(self.snpCoverageDisplayConfig);
+                else if (!(0, fast_deep_equal_1.default)(coverageConf, (0, mobx_state_tree_1.getSnapshot)(SNPCoverageDisplay.configuration))) {
+                    SNPCoverageDisplay.setHeight(self.snpCovHeight);
+                    SNPCoverageDisplay.setConfig(self.coverageConf);
                 }
-                if (!self.PileupDisplay) {
-                    self.setPileupDisplay(self.pileupDisplayConfig);
+                if (!PileupDisplay || self.lowerPanelType !== PileupDisplay.type) {
+                    self.setPileupDisplay(pileupConf);
                 }
-                else if (!(0, fast_deep_equal_1.default)(self.pileupDisplayConfig, (0, mobx_state_tree_1.getSnapshot)(self.PileupDisplay.configuration))) {
-                    self.PileupDisplay.setConfig(self.pileupDisplayConfig);
-                }
-                // propagate the filterBy setting from pileupdisplay to snpcoverage
-                // note: the snpcoverage display is not able to control filterBy
-                // itself
-                if (self.PileupDisplay.filterBy &&
-                    !(0, fast_deep_equal_1.default)((0, mobx_state_tree_1.getSnapshot)(self.PileupDisplay.filterBy), (0, mobx_state_tree_1.getSnapshot)(self.SNPCoverageDisplay.filterBy))) {
-                    self.SNPCoverageDisplay.setFilterBy((0, mobx_state_tree_1.getSnapshot)(self.PileupDisplay.filterBy));
-                }
-                if (self.PileupDisplay.colorBy &&
-                    !(0, fast_deep_equal_1.default)((0, mobx_state_tree_1.getSnapshot)(self.PileupDisplay.colorBy), self.SNPCoverageDisplay.colorBy
-                        ? (0, mobx_state_tree_1.getSnapshot)(self.SNPCoverageDisplay.colorBy)
-                        : {})) {
-                    self.SNPCoverageDisplay.setColorBy((0, mobx_state_tree_1.getSnapshot)(self.PileupDisplay.colorBy));
+                else if (!(0, fast_deep_equal_1.default)(pileupConf, (0, mobx_state_tree_1.getSnapshot)(PileupDisplay.configuration))) {
+                    PileupDisplay.setConfig(self.pileupConf);
                 }
+                propagateColorBy(self);
+                propagateFilterBy(self);
             }));
             (0, mobx_state_tree_1.addDisposer)(self, (0, mobx_1.autorun)(() => {
                 self.setSNPCoverageHeight(self.SNPCoverageDisplay.height);
             }));
+            (0, mobx_state_tree_1.addDisposer)(self, (0, mobx_1.autorun)(() => {
+                self.PileupDisplay.setHeight(self.height - self.SNPCoverageDisplay.height);
+            }));
         },
         /**
          * #action
@@ -273,7 +254,41 @@ function stateModelFactory(pluginManager, configSchema) {
                     overrideHeight: pileupHeight,
                 }))));
         },
-    }));
+    }))
+        .views(self => {
+        const { trackMenuItems: superTrackMenuItems } = self;
+        return {
+            /**
+             * #method
+             */
+            trackMenuItems() {
+                const extra = getLowerPanelDisplays(pluginManager).map(d => ({
+                    type: 'radio',
+                    label: d.displayName,
+                    checked: d.name === self.PileupDisplay.type,
+                    onClick: () => self.setLowerPanelType(d.name),
+                }));
+                return [
+                    ...superTrackMenuItems(),
+                    {
+                        type: 'subMenu',
+                        label: 'Pileup settings',
+                        subMenu: self.PileupDisplay.trackMenuItems(),
+                    },
+                    {
+                        type: 'subMenu',
+                        label: 'SNPCoverage settings',
+                        subMenu: self.SNPCoverageDisplay.trackMenuItems(),
+                    },
+                    {
+                        type: 'subMenu',
+                        label: `Replace lower panel with...`,
+                        subMenu: extra,
+                    },
+                ];
+            },
+        };
+    });
 }
 exports.default = stateModelFactory;
 //# sourceMappingURL=model.js.map

package/dist/LinearAlignmentsDisplay/models/model.js.map

@@ -1 +1 @@
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package/dist/LinearPileupDisplay/components/ColorByModifications.d.ts

@@ -2,7 +2,9 @@
 import { ObservableMap } from 'mobx';
 declare function ColorByTagDlg(props: {
     model: {
-        setColorScheme: Function;
+        setColorScheme: (arg: {
+            type: string;
+        }) => void;
         modificationTagMap: ObservableMap<string, string>;
         colorBy?: {
             type: string;

package/dist/LinearPileupDisplay/components/ColorByModifications.js

@@ -6,15 +6,9 @@ Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importDefault(require("react"));
 const mobx_react_1 = require("mobx-react");
 const material_1 = require("@mui/material");
+const ui_1 = require("@jbrowse/core/ui");
 const mui_1 = require("tss-react/mui");
-const Close_1 = __importDefault(require("@mui/icons-material/Close"));
 const useStyles = (0, mui_1.makeStyles)()(theme => ({
-    closeButton: {
-        position: 'absolute',
-        right: theme.spacing(1),
-        top: theme.spacing(1),
-        color: theme.palette.grey[500],
-    },
     table: {
         border: '1px solid #888',
         margin: theme.spacing(4),
@@ -35,15 +29,10 @@ function ModificationTable({ modifications, }) {
                 } })))))));
 }
 function ColorByTagDlg(props) {
-    const { classes } = useStyles();
     const { model, handleClose } = props;
     const { colorBy, modificationTagMap } = model;
     const modifications = [...modificationTagMap.entries()];
-    return (react_1.default.createElement(material_1.Dialog, { open: true, onClose: handleClose },
-        react_1.default.createElement(material_1.DialogTitle, null,
-            "Color by modifications",
-            react_1.default.createElement(material_1.IconButton, { "aria-label": "close", className: classes.closeButton, onClick: handleClose },
-                react_1.default.createElement(Close_1.default, null))),
+    return (react_1.default.createElement(ui_1.Dialog, { open: true, onClose: handleClose, title: "Color by modifications" },
         react_1.default.createElement(material_1.DialogContent, null,
             react_1.default.createElement(material_1.Typography, null, "You can choose to color the modifications in the BAM/CRAM MM/ML specification using this dialog. Choosing modifications colors the modified positions and can color multiple modification types. Choosing the methylation setting colors methylated and unmethylated CpG."),
             react_1.default.createElement(material_1.Typography, null, "Note: you can revisit this dialog to see the current mapping of colors to modification type for the modification coloring mode"),
@@ -58,19 +47,15 @@ function ColorByTagDlg(props) {
                         ['unmethylated', 'blue'],
                     ] })) : null),
             react_1.default.createElement(material_1.DialogActions, null,
-                react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", style: { margin: 5 }, onClick: () => {
-                        model.setColorScheme({
-                            type: 'modifications',
-                        });
+                react_1.default.createElement(material_1.Button, { variant: "contained", onClick: () => {
+                        model.setColorScheme({ type: 'modifications' });
                         handleClose();
                     } }, "Modifications"),
-                react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", style: { margin: 5 }, onClick: () => {
-                        model.setColorScheme({
-                            type: 'methylation',
-                        });
+                react_1.default.createElement(material_1.Button, { variant: "contained", onClick: () => {
+                        model.setColorScheme({ type: 'methylation' });
                         handleClose();
                     } }, "Methylation"),
-                react_1.default.createElement(material_1.Button, { variant: "contained", color: "secondary", style: { margin: 5 }, onClick: () => handleClose() }, "Cancel")))));
+                react_1.default.createElement(material_1.Button, { variant: "contained", color: "secondary", onClick: () => handleClose() }, "Cancel")))));
 }
 exports.default = (0, mobx_react_1.observer)(ColorByTagDlg);
 //# sourceMappingURL=ColorByModifications.js.map

package/dist/LinearPileupDisplay/components/ColorByModifications.js.map

@@ -1 +1 @@
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