@jbrowse/plugin-alignments 2.17.0 → 2.18.0

package/dist/LinearPileupDisplay/SharedLinearPileupDisplayMixin.js

@@ -28,131 +28,84 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.SharedLinearPileupDisplayMixin = SharedLinearPileupDisplayMixin;
 const react_1 = require("react");
-const mobx_1 = require("mobx");
-const mobx_state_tree_1 = require("mobx-state-tree");
-const copy_to_clipboard_1 = __importDefault(require("copy-to-clipboard"));
 const configuration_1 = require("@jbrowse/core/configuration");
 const serializableFilterChain_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain"));
-const tracks_1 = require("@jbrowse/core/util/tracks");
+const Icons_1 = require("@jbrowse/core/ui/Icons");
 const util_1 = require("@jbrowse/core/util");
+const tracks_1 = require("@jbrowse/core/util/tracks");
 const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
-// icons
-const Icons_1 = require("@jbrowse/core/ui/Icons");
-const MenuOpen_1 = __importDefault(require("@mui/icons-material/MenuOpen"));
 const ClearAll_1 = __importDefault(require("@mui/icons-material/ClearAll"));
-// locals
-const LinearPileupDisplayBlurb_1 = __importDefault(require("./components/LinearPileupDisplayBlurb"));
+const MenuOpen_1 = __importDefault(require("@mui/icons-material/MenuOpen"));
+const copy_to_clipboard_1 = __importDefault(require("copy-to-clipboard"));
+const mobx_1 = require("mobx");
+const mobx_state_tree_1 = require("mobx-state-tree");
 const util_2 = require("../util");
+const LinearPileupDisplayBlurb_1 = __importDefault(require("./components/LinearPileupDisplayBlurb"));
 const getUniqueTags_1 = require("../shared/getUniqueTags");
-const util_3 = require("../shared/util");
-// lazies
 const FilterByTagDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('../shared/components/FilterByTagDialog'))));
 const ColorByTagDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/ColorByTagDialog'))));
 const SetFeatureHeightDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/SetFeatureHeightDialog'))));
 const SetMaxHeightDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/SetMaxHeightDialog'))));
-// using a map because it preserves order
 const rendererTypes = new Map([
     ['pileup', 'PileupRenderer'],
     ['svg', 'SvgFeatureRenderer'],
 ]);
-/**
- * #stateModel SharedLinearPileupDisplayMixin
- * #category display
- * extends `BaseLinearDisplay`
- */
 function SharedLinearPileupDisplayMixin(configSchema) {
     return mobx_state_tree_1.types
         .compose(plugin_linear_genome_view_1.BaseLinearDisplay, mobx_state_tree_1.types.model({
-        /**
-         * #property
-         */
         configuration: (0, configuration_1.ConfigurationReference)(configSchema),
-        /**
-         * #property
-         */
         featureHeight: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.number),
-        /**
-         * #property
-         */
         noSpacing: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.boolean),
-        /**
-         * #property
-         */
         fadeLikelihood: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.boolean),
-        /**
-         * #property
-         */
         trackMaxHeight: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.number),
-        /**
-         * #property
-         */
-        colorBy: mobx_state_tree_1.types.frozen(),
-        /**
-         * #property
-         */
-        filterBy: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.frozen(), util_3.defaultFilterFlags),
-        /**
-         * #property
-         */
+        colorBySetting: mobx_state_tree_1.types.frozen(),
+        filterBySetting: mobx_state_tree_1.types.frozen(),
         jexlFilters: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.array(mobx_state_tree_1.types.string), []),
     }))
         .volatile(() => ({
         colorTagMap: mobx_1.observable.map({}),
         featureUnderMouseVolatile: undefined,
         tagsReady: false,
+    }))
+        .views(self => ({
+        get colorBy() {
+            var _a;
+            return (_a = self.colorBySetting) !== null && _a !== void 0 ? _a : (0, configuration_1.getConf)(self, 'colorBy');
+        },
+        get filterBy() {
+            var _a;
+            return (_a = self.filterBySetting) !== null && _a !== void 0 ? _a : (0, configuration_1.getConf)(self, 'filterBy');
+        },
     }))
         .views(self => ({
         get autorunReady() {
             const view = (0, util_1.getContainingView)(self);
-            return (view.initialized &&
-                self.featureDensityStatsReady &&
-                !self.regionTooLarge);
+            return view.initialized && self.statsReadyAndRegionNotTooLarge;
         },
     }))
         .actions(self => ({
-        /**
-         * #action
-         */
         setTagsReady(flag) {
             self.tagsReady = flag;
         },
-        /**
-         * #action
-         */
         setMaxHeight(n) {
             self.trackMaxHeight = n;
         },
-        /**
-         * #action
-         */
         setFeatureHeight(n) {
             self.featureHeight = n;
         },
-        /**
-         * #action
-         */
         setNoSpacing(flag) {
             self.noSpacing = flag;
         },
-        /**
-         * #action
-         */
         setColorScheme(colorScheme) {
             self.colorTagMap = mobx_1.observable.map({});
-            self.colorBy = {
+            self.colorBySetting = {
                 ...colorScheme,
             };
             if (colorScheme.tag) {
                 self.tagsReady = false;
             }
         },
-        /**
-         * #action
-         */
         updateColorTagMap(uniqueTag) {
-            // pale color scheme
-            // https://cran.r-project.org/web/packages/khroma/vignettes/tol.html
-            // e.g. "tol_light"
             const colorPalette = [
                 '#BBCCEE',
                 'pink',
@@ -172,15 +125,9 @@ function SharedLinearPileupDisplayMixin(configSchema) {
                 }
             });
         },
-        /**
-         * #action
-         */
         setFeatureUnderMouse(feat) {
             self.featureUnderMouseVolatile = feat;
         },
-        /**
-         * #action
-         */
         selectFeature(feature) {
             const session = (0, util_1.getSession)(self);
             if ((0, util_1.isSessionModelWithWidgets)(session)) {
@@ -193,41 +140,25 @@ function SharedLinearPileupDisplayMixin(configSchema) {
             }
             session.setSelection(feature);
         },
-        /**
-         * #action
-         * uses copy-to-clipboard and generates notification
-         */
         copyFeatureToClipboard(feature) {
             const { uniqueId, ...rest } = feature.toJSON();
             const session = (0, util_1.getSession)(self);
             (0, copy_to_clipboard_1.default)(JSON.stringify(rest, null, 4));
             session.notify('Copied to clipboard', 'success');
         },
-        /**
-         * #action
-         */
         setConfig(conf) {
             self.configuration = conf;
         },
-        /**
-         * #action
-         */
         setFilterBy(filter) {
-            self.filterBy = {
+            self.filterBySetting = {
                 ...filter,
             };
         },
-        /**
-         * #action
-         */
         setJexlFilters(filters) {
             self.jexlFilters = (0, mobx_state_tree_1.cast)(filters);
         },
     }))
         .views(self => ({
-        /**
-         * #getter
-         */
         get rendererConfig() {
             const { featureHeight, noSpacing, trackMaxHeight, rendererTypeName } = self;
             const configBlob = (0, configuration_1.getConf)(self, ['renderers', rendererTypeName]) || {};
@@ -242,33 +173,18 @@ function SharedLinearPileupDisplayMixin(configSchema) {
         },
     }))
         .views(self => ({
-        /**
-         * #getter
-         */
         get maxHeight() {
             return (0, configuration_1.readConfObject)(self.rendererConfig, 'maxHeight');
         },
-        /**
-         * #getter
-         */
         get featureHeightSetting() {
             return (0, configuration_1.readConfObject)(self.rendererConfig, 'height');
         },
-        /**
-         * #getter
-         */
         get featureUnderMouse() {
             return self.featureUnderMouseVolatile;
         },
-        /**
-         * #getter
-         */
         renderReady() {
             return self.tagsReady;
         },
-        /**
-         * #getter
-         */
         get filters() {
             return new serializableFilterChain_1.default({ filters: self.jexlFilters });
         },
@@ -276,9 +192,6 @@ function SharedLinearPileupDisplayMixin(configSchema) {
         .views(self => {
         const { trackMenuItems: superTrackMenuItems, renderProps: superRenderProps, } = self;
         return {
-            /**
-             * #getter
-             */
             get rendererTypeName() {
                 const viewName = (0, configuration_1.getConf)(self, 'defaultRendering');
                 const rendererType = rendererTypes.get(viewName);
@@ -287,9 +200,6 @@ function SharedLinearPileupDisplayMixin(configSchema) {
                 }
                 return rendererType;
             },
-            /**
-             * #method
-             */
             contextMenuItems() {
                 const feat = self.contextMenuFeature;
                 return feat
@@ -312,15 +222,9 @@ function SharedLinearPileupDisplayMixin(configSchema) {
                     ]
                     : [];
             },
-            /**
-             * #getter
-             */
             get DisplayBlurb() {
                 return LinearPileupDisplayBlurb_1.default;
             },
-            /**
-             * #method
-             */
             renderPropsPre() {
                 const { colorTagMap, colorBy, filterBy, rpcDriverName } = self;
                 const superProps = superRenderProps();
@@ -363,7 +267,6 @@ function SharedLinearPileupDisplayMixin(configSchema) {
                     onClick() {
                         self.clearFeatureSelection();
                     },
-                    // similar to click but opens a menu with further options
                     async onFeatureContextMenu(_, featureId) {
                         const session = (0, util_1.getSession)(self);
                         const { rpcManager } = session;
@@ -392,9 +295,6 @@ function SharedLinearPileupDisplayMixin(configSchema) {
                     },
                 };
             },
-            /**
-             * #method
-             */
             colorSchemeSubMenuItems() {
                 return [
                     {
@@ -459,9 +359,6 @@ function SharedLinearPileupDisplayMixin(configSchema) {
                     },
                 ];
             },
-            /**
-             * #method
-             */
             trackMenuItems() {
                 return [
                     ...superTrackMenuItems(),
@@ -556,9 +453,6 @@ function SharedLinearPileupDisplayMixin(configSchema) {
                     self.setTagsReady(true);
                 }
             }, { delay: 1000 });
-            // autorun synchronizes featureUnderMouse with featureIdUnderMouse
-            // asynchronously. this is needed due to how we do not serialize all
-            // features from the BAM/CRAM over the rpc
             (0, mobx_state_tree_1.addDisposer)(self, (0, mobx_1.autorun)(async () => {
                 var _a;
                 const session = (0, util_1.getSession)(self);
@@ -577,10 +471,6 @@ function SharedLinearPileupDisplayMixin(configSchema) {
                                 layoutId: view.id,
                                 rendererType: 'PileupRenderer',
                             }));
-                            // check featureIdUnderMouse is still the same as the
-                            // feature.id that was returned e.g. that the user hasn't
-                            // moused over to a new position during the async operation
-                            // above
                             if ((0, mobx_state_tree_1.isAlive)(self) &&
                                 feature &&
                                 self.featureIdUnderMouse === feature.uniqueId) {
@@ -595,5 +485,16 @@ function SharedLinearPileupDisplayMixin(configSchema) {
                 }
             }));
         },
-    }));
+    }))
+        .preProcessSnapshot(snap => {
+        if (snap) {
+            const { colorBy, filterBy, ...rest } = snap;
+            return {
+                ...rest,
+                filterBySetting: filterBy,
+                colorBySetting: colorBy,
+            };
+        }
+        return snap;
+    });
 }

package/dist/LinearPileupDisplay/components/ColorByTagDialog.js

@@ -24,9 +24,9 @@ var __importStar = (this && this.__importStar) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importStar(require("react"));
-const mobx_react_1 = require("mobx-react");
-const material_1 = require("@mui/material");
 const ui_1 = require("@jbrowse/core/ui");
+const material_1 = require("@mui/material");
+const mobx_react_1 = require("mobx-react");
 const ColorByTagDialog = (0, mobx_react_1.observer)(function ({ model, handleClose, }) {
     const [tag, setTag] = (0, react_1.useState)('');
     const validTag = /^[A-Za-z][A-Za-z0-9]$/.exec(tag);

package/dist/LinearPileupDisplay/components/GroupByDialog.d.ts

@@ -1,6 +1,6 @@
 import React from 'react';
-import { IAnyStateTreeNode } from 'mobx-state-tree';
-import { AnyConfigurationModel } from '@jbrowse/core/configuration';
+import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
+import type { IAnyStateTreeNode } from 'mobx-state-tree';
 declare const GroupByTagDialog: (props: {
     model: {
         adapterConfig: AnyConfigurationModel;

package/dist/LinearPileupDisplay/components/GroupByDialog.js

@@ -24,28 +24,24 @@ var __importStar = (this && this.__importStar) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importStar(require("react"));
-const mobx_react_1 = require("mobx-react");
-const material_1 = require("@mui/material");
 const ui_1 = require("@jbrowse/core/ui");
-const mobx_state_tree_1 = require("mobx-state-tree");
 const util_1 = require("@jbrowse/core/util");
-// locals
+const material_1 = require("@mui/material");
+const mobx_react_1 = require("mobx-react");
+const mobx_state_tree_1 = require("mobx-state-tree");
 const getUniqueTags_1 = require("../../shared/getUniqueTags");
-function clone(c) {
-    return JSON.parse(JSON.stringify(c));
-}
+const util_2 = require("../../shared/util");
 const GroupByTagDialog = (0, mobx_react_1.observer)(function (props) {
     const { model, handleClose } = props;
-    const [tag, setTag] = (0, react_1.useState)('');
-    const [tagSet, setTagSet] = (0, react_1.useState)();
+    const [tag, setGroupByTag] = (0, react_1.useState)('');
+    const [tagSet, setGroupByTagSet] = (0, react_1.useState)();
     const [loading, setLoading] = (0, react_1.useState)(false);
     const [error, setError] = (0, react_1.useState)();
-    const [includeUndefined, setIncludeUndefined] = (0, react_1.useState)(true);
     const validTag = /^[A-Za-z][A-Za-z0-9]$/.exec(tag);
     const isInvalid = tag.length === 2 && !validTag;
     const debouncedTag = (0, util_1.useDebounce)(tag, 1000);
+    const [type, setType] = (0, react_1.useState)('');
     (0, react_1.useEffect)(() => {
-        // eslint-disable-next-line @typescript-eslint/no-floating-promises
         ;
         (async () => {
             try {
@@ -58,7 +54,7 @@ const GroupByTagDialog = (0, mobx_react_1.observer)(function (props) {
                         blocks: (0, util_1.getContainingView)(model)
                             .staticBlocks,
                     });
-                    setTagSet(vals);
+                    setGroupByTagSet(vals);
                 }
             }
             catch (e) {
@@ -70,57 +66,114 @@ const GroupByTagDialog = (0, mobx_react_1.observer)(function (props) {
             }
         })();
     }, [model, isInvalid, debouncedTag]);
-    return (react_1.default.createElement(ui_1.Dialog, { open: true, onClose: handleClose, title: "Group by tag" },
+    return (react_1.default.createElement(ui_1.Dialog, { open: true, onClose: handleClose, title: "Group by" },
         react_1.default.createElement(material_1.DialogContent, null,
-            react_1.default.createElement(material_1.Typography, null, "Set the tag to group by. NOTE: this will make a set of fully functional subtracks with the filter by by default set to the values of the tag that are visible in the current view"),
-            react_1.default.createElement(material_1.Typography, { color: "textSecondary" }, "Examples: HP for haplotype, RG for read group, etc."),
-            react_1.default.createElement(material_1.FormControlLabel, { control: react_1.default.createElement(material_1.Checkbox, { checked: includeUndefined, onChange: () => {
-                        setIncludeUndefined(!includeUndefined);
-                    } }), label: "Make a new subtrack for undefined values of tag as well?" }),
-            react_1.default.createElement(material_1.TextField, { value: tag, onChange: event => {
-                    setTag(event.target.value);
-                }, placeholder: "Enter tag name", error: isInvalid, helperText: isInvalid ? 'Not a valid tag' : '', autoComplete: "off", "data-testid": "group-tag-name", slotProps: {
-                    htmlInput: {
-                        maxLength: 2,
-                        'data-testid': 'group-tag-name-input',
-                    },
-                } }),
-            error ? (react_1.default.createElement(ui_1.ErrorMessage, { error: error })) : loading ? (react_1.default.createElement(ui_1.LoadingEllipses, { title: "Loading unique tags" })) : tagSet ? (react_1.default.createElement("div", null,
-                react_1.default.createElement("div", null,
-                    "Found unique ",
-                    tag,
-                    " values:"),
-                react_1.default.createElement("div", null, tagSet.join(', ')))) : null),
+            react_1.default.createElement(material_1.Typography, null, "NOTE: this will create new session tracks with the \"filter by\" set to the values chosen here rather than affecting the current track state"),
+            react_1.default.createElement(material_1.TextField, { fullWidth: true, value: type, onChange: event => {
+                    setType(event.target.value);
+                }, label: "Group by...", select: true },
+                react_1.default.createElement(material_1.MenuItem, { value: "strand" }, "Strand"),
+                react_1.default.createElement(material_1.MenuItem, { value: "tag" }, "Tag")),
+            type === 'tag' ? (react_1.default.createElement(react_1.default.Fragment, null,
+                react_1.default.createElement(material_1.Typography, { color: "textSecondary" }, "Examples: HP for haplotype, RG for read group, etc."),
+                react_1.default.createElement(material_1.TextField, { value: tag, onChange: event => {
+                        setGroupByTag(event.target.value);
+                    }, placeholder: "Enter tag name", error: isInvalid, helperText: isInvalid ? 'Not a valid tag' : '', autoComplete: "off", "data-testid": "group-tag-name", slotProps: {
+                        htmlInput: {
+                            maxLength: 2,
+                            'data-testid': 'group-tag-name-input',
+                        },
+                    } }),
+                error ? (react_1.default.createElement(ui_1.ErrorMessage, { error: error })) : loading ? (react_1.default.createElement(ui_1.LoadingEllipses, { title: "Loading unique tags" })) : tagSet ? (react_1.default.createElement("div", null,
+                    react_1.default.createElement("div", null,
+                        "Found unique ",
+                        tag,
+                        " values:"),
+                    react_1.default.createElement("div", null, tagSet.join(', ')))) : null)) : null),
         react_1.default.createElement(material_1.DialogActions, null,
             react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", type: "submit", disabled: !tagSet, autoFocus: true, onClick: () => {
                     const track = (0, util_1.getContainingTrack)(model);
-                    const trackConf = clone((0, mobx_state_tree_1.getSnapshot)(track.configuration));
+                    const trackConf = structuredClone((0, mobx_state_tree_1.getSnapshot)(track.configuration));
                     const session = (0, util_1.getSession)(model);
-                    if (tagSet) {
-                        const ret = [...tagSet];
-                        if (includeUndefined) {
-                            ret.push(undefined);
+                    const view = (0, util_1.getContainingView)(model);
+                    if (type === 'tag') {
+                        if (tagSet) {
+                            const ret = [...tagSet, undefined];
+                            for (const tagValue of ret) {
+                                const t1 = `${trackConf.trackId}-${tag}:${tagValue}-${+Date.now()}-sessionTrack`;
+                                session.addTrackConf({
+                                    ...trackConf,
+                                    trackId: t1,
+                                    name: `${trackConf.name} (-)`,
+                                    displays: [
+                                        {
+                                            displayId: `${t1}-LinearAlignmentsDisplay`,
+                                            type: 'LinearAlignmentsDisplay',
+                                            pileupDisplay: {
+                                                displayId: `${t1}-LinearAlignmentsDisplay-LinearPileupDisplay`,
+                                                type: 'LinearPileupDisplay',
+                                                filterBy: {
+                                                    ...util_2.defaultFilterFlags,
+                                                    tagFilter: {
+                                                        tag,
+                                                        value: tagValue,
+                                                    },
+                                                },
+                                            },
+                                        },
+                                    ],
+                                });
+                                view.showTrack(t1);
+                            }
                         }
-                        for (const tagValue of ret) {
-                            // @ts-expect-error
-                            const newTrackConf = session.addTrackConf({
-                                ...trackConf,
-                                trackId: `${trackConf.trackId}-${tag}:${tagValue}-${+Date.now()}-sessionTrack`,
-                                name: `${trackConf.name} ${tag}:${tagValue}`,
-                                displays: undefined,
-                            });
-                            const view = (0, util_1.getContainingView)(model);
-                            const t = view.showTrack(newTrackConf.trackId);
-                            const d = t.displays[0];
-                            d.setFilterBy({
-                                flagInclude: 0,
-                                flagExclude: 1540,
-                                tagFilter: {
-                                    tag,
-                                    value: tagValue,
+                    }
+                    else if (type === 'strand') {
+                        const t1 = `${trackConf.trackId}-${tag}:(-)-${+Date.now()}-sessionTrack`;
+                        const t2 = `${trackConf.trackId}-${tag}:(+)-${+Date.now()}-sessionTrack`;
+                        session.addTrackConf({
+                            ...trackConf,
+                            trackId: t1,
+                            name: `${trackConf.name} (-)`,
+                            displays: [
+                                {
+                                    displayId: `${t1}-LinearAlignmentsDisplay`,
+                                    type: 'LinearAlignmentsDisplay',
+                                    pileupDisplay: {
+                                        displayId: `${t1}-LinearAlignmentsDisplay-LinearPileupDisplay`,
+                                        type: 'LinearPileupDisplay',
+                                        filterBy: util_2.negFlags,
+                                    },
                                 },
-                            });
-                        }
+                                {
+                                    displayId: `${t1}-LinearSNPCoverageDisplay`,
+                                    type: 'LinearSNPCoverageDisplay',
+                                    filterBy: util_2.negFlags,
+                                },
+                            ],
+                        });
+                        session.addTrackConf({
+                            ...trackConf,
+                            trackId: t2,
+                            name: `${trackConf.name} (+)`,
+                            displays: [
+                                {
+                                    displayId: `${t2}-LinearAlignmentsDisplay`,
+                                    type: 'LinearAlignmentsDisplay',
+                                    pileupDisplay: {
+                                        displayId: `${t2}-LinearAlignmentsDisplay-LinearPileupDisplay`,
+                                        type: 'LinearPileupDisplay',
+                                        filterBy: util_2.posFlags,
+                                    },
+                                },
+                                {
+                                    displayId: `${t2}-LinearSNPCoverageDisplay`,
+                                    type: 'LinearSNPCoverageDisplay',
+                                    filterBy: util_2.posFlags,
+                                },
+                            ],
+                        });
+                        view.showTrack(t1);
+                        view.showTrack(t2);
                     }
                     handleClose();
                 } }, "Submit"),

package/dist/LinearPileupDisplay/components/LinearPileupDisplayBlurb.d.ts

@@ -1,12 +1,8 @@
 import React from 'react';
+import type { SortedBy } from '../../shared/types';
 declare const LinearPileupDisplayBlurb: ({ model, }: {
     model: {
-        sortedBy?: {
-            pos: number;
-            refName: number;
-            type: string;
-            tag?: string;
-        };
+        sortedBy?: SortedBy;
     };
 }) => React.JSX.Element | null;
 export default LinearPileupDisplayBlurb;

package/dist/LinearPileupDisplay/components/LinearPileupDisplayBlurb.js

@@ -4,8 +4,8 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importDefault(require("react"));
-const mobx_react_1 = require("mobx-react");
 const material_1 = require("@mui/material");
+const mobx_react_1 = require("mobx-react");
 const LinearPileupDisplayBlurb = (0, mobx_react_1.observer)(function ({ model, }) {
     var _a;
     const { sortedBy } = model;

package/dist/LinearPileupDisplay/components/SetFeatureHeightDialog.js

@@ -24,9 +24,9 @@ var __importStar = (this && this.__importStar) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importStar(require("react"));
-const mobx_react_1 = require("mobx-react");
-const material_1 = require("@mui/material");
 const ui_1 = require("@jbrowse/core/ui");
+const material_1 = require("@mui/material");
+const mobx_react_1 = require("mobx-react");
 const SetFeatureHeightDialog = (0, mobx_react_1.observer)(function (props) {
     const { model, handleClose } = props;
     const { featureHeightSetting, noSpacing: noSpacingSetting } = model;

package/dist/LinearPileupDisplay/components/SetMaxHeightDialog.js

@@ -24,9 +24,9 @@ var __importStar = (this && this.__importStar) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importStar(require("react"));
-const mobx_react_1 = require("mobx-react");
-const material_1 = require("@mui/material");
 const ui_1 = require("@jbrowse/core/ui");
+const material_1 = require("@mui/material");
+const mobx_react_1 = require("mobx-react");
 const mui_1 = require("tss-react/mui");
 const useStyles = (0, mui_1.makeStyles)()({
     root: {

package/dist/LinearPileupDisplay/components/SortByTagDialog.js

@@ -24,9 +24,9 @@ var __importStar = (this && this.__importStar) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importStar(require("react"));
-const mobx_react_1 = require("mobx-react");
-const material_1 = require("@mui/material");
 const ui_1 = require("@jbrowse/core/ui");
+const material_1 = require("@mui/material");
+const mobx_react_1 = require("mobx-react");
 const SortByTagDialog = (0, mobx_react_1.observer)(function (props) {
     const { model, handleClose } = props;
     const [tag, setTag] = (0, react_1.useState)('');