@jbrowse/plugin-alignments 2.1.0 → 2.1.2

package/dist/SNPCoverageRenderer/SNPCoverageRenderer.js.map

@@ -1 +1 @@
-{"version":3,"file":"SNPCoverageRenderer.js","sourceRoot":"","sources":["../../src/SNPCoverageRenderer/SNPCoverageRenderer.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,uCAAqD;AACrD,2CAAqE;AACrE,6DAA4D;AAE5D,wDAM+B;AA2B/B;IAAiD,uCAAkB;IAAnE;;IAwOA,CAAC;IAvOC,4EAA4E;IAC5E,kDAAkD;IAC5C,kCAAI,GAAV,UACE,GAA6B,EAC7B,KAAyC;;;;gBAGvC,QAAQ,GAUN,KAAK,SAVC,EACR,OAAO,GASL,KAAK,QATA,EACP,OAAO,GAQL,KAAK,QARA,EACP,mBAAmB,GAOjB,KAAK,oBAPY,EACnB,KAME,KAAK,mBANgB,EAAvB,kBAAkB,mBAAG,EAAE,KAAA,EACvB,SAAS,GAKP,KAAK,UALE,EACD,gBAAgB,GAItB,KAAK,OAJiB,EACjB,WAAW,GAGhB,KAAK,MAHW,EACV,GAAG,GAET,KAAK,OAFI,EACX,KAAK,GACH,KAAK,MADF,CACE;gBACH,KAAK,GAAG,IAAA,uBAAkB,EAAC,WAAW,CAAC,CAAA;gBACvC,KAAA,OAAW,OAAO,IAAA,EAAjB,MAAM,QAAA,CAAW;gBAClB,KAAK,GAAG,CAAC,MAAM,CAAC,GAAG,GAAG,MAAM,CAAC,KAAK,CAAC,GAAG,OAAO,CAAA;gBAK7C,MAAM,GAAG,sCAAsB,CAAA;gBAC/B,MAAM,GAAG,gBAAgB,GAAG,MAAM,GAAG,CAAC,CAAA;gBAEpC,MAAM,GAAK,SAAS,OAAd,CAAc;gBAC5B,IAAI,CAAC,MAAM,EAAE;oBACX,sBAAM;iBACP;gBACK,IAAI,yBAAQ,SAAS,KAAE,KAAK,EAAE,CAAC,CAAC,EAAE,MAAM,CAAC,GAAE,CAAA;gBAC3C,SAAS,GAAG,IAAA,wBAAQ,EAAC,IAAI,CAAC,CAAA;gBAG1B,kBAAkB,GAAG,IAAA,wBAAQ,wBAC9B,IAAI,KACP,KAAK,EAAE,CAAC,CAAC,EAAE,MAAM,GAAG,CAAC,CAAC,EACtB,SAAS,EAAE,QAAQ,IACnB,CAAA;gBACI,OAAO,GAAG,IAAA,yBAAS,EAAC,SAAS,CAAC,SAAS,CAAC,CAAA;gBAExC,kBAAkB,GAAG,IAAA,8BAAc,EAAC,GAAG,EAAE,oBAAoB,CAAC,CAAA;gBAC9D,mBAAmB,GAAG,IAAA,8BAAc,EAAC,GAAG,EAAE,qBAAqB,CAAC,CAAA;gBAChE,QAAQ,GAAG,IAAA,8BAAc,EAAC,GAAG,EAAE,UAAU,CAAC,CAAA;gBAC1C,cAAc,GAAG,IAAA,8BAAc,EAAC,GAAG,EAAE,gBAAgB,CAAC,CAAA;gBAGtD,GAAG,GAAG,UAAC,CAAS,IAAK,OAAA,MAAM,GAAG,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,GAAG,MAAM,EAArC,CAAqC,CAAA;gBAC1D,QAAQ,GAAG,UAAC,CAAS,IAAK,OAAA,GAAG,CAAC,OAAO,CAAC,GAAG,GAAG,CAAC,CAAC,CAAC,EAArB,CAAqB,CAAA;gBAE/C,YAAY,GAAG,UAAC,CAAS;oBAC7B,OAAA,MAAM,GAAG,CAAC,kBAAkB,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,GAAG,MAAM;gBAA9C,CAA8C,CAAA;gBAC1C,iBAAiB,GAAG,UAAC,CAAS;oBAClC,OAAA,YAAY,CAAC,IAAA,yBAAS,EAAC,QAAQ,CAAC,CAAC,GAAG,YAAY,CAAC,CAAC,CAAC;gBAAnD,CAAmD,CAAA;gBAG7C,KAAK,GAAK,KAAK,CAAC,OAAO,MAAlB,CAAkB;gBACzB,YAAY,GAA8B;oBAC9C,CAAC,EAAE,KAAK,CAAC,CAAC,CAAC,IAAI;oBACf,CAAC,EAAE,KAAK,CAAC,CAAC,CAAC,IAAI;oBACf,CAAC,EAAE,KAAK,CAAC,CAAC,CAAC,IAAI;oBACf,CAAC,EAAE,KAAK,CAAC,CAAC,CAAC,IAAI;oBACf,KAAK,EAAE,WAAW;oBAClB,SAAS,EAAE,QAAQ;oBACnB,QAAQ,EAAE,MAAM;oBAChB,QAAQ,EAAE,KAAK;oBACf,IAAI,EAAE,KAAK;oBACX,MAAM,EAAE,MAAM;oBACd,GAAG,EAAE,WAAW;iBACjB,CAAA;gBAEK,KAAK,4BAAO,QAAQ,CAAC,MAAM,EAAE,SAAC,CAAA;gBAC9B,QAAQ,GAAG,KAAK,CAAC,MAAM,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,GAAG,CAAC,MAAM,CAAC,KAAK,MAAM,EAAxB,CAAwB,CAAC,CAAA;gBACtD,KAAK,GAAG,KAAK,CAAC,MAAM,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,GAAG,CAAC,MAAM,CAAC,KAAK,MAAM,EAAxB,CAAwB,CAAC,CAAA;gBAEzD,wEAAwE;gBACxE,+CAA+C;gBAC/C,GAAG,CAAC,SAAS,GAAG,YAAY,CAAC,KAAK,CAAA;gBAClC,KAAS,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;oBAClC,OAAO,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAA;oBACrB,KAAA,OAAoB,IAAA,oBAAa,EAAC,OAAO,EAAE,MAAM,EAAE,OAAO,CAAC,IAAA,EAA1D,MAAM,QAAA,EAAE,OAAO,QAAA,CAA2C;oBAC3D,CAAC,GAAG,OAAO,GAAG,MAAM,GAAG,GAAG,CAAA;oBAC1B,KAAK,GAAG,OAAO,CAAC,GAAG,CAAC,OAAO,CAAW,CAAA;oBAC5C,GAAG,CAAC,QAAQ,CAAC,MAAM,EAAE,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC,EAAE,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAA;iBACrD;gBAOG,SAAS,GAAG,CAAC,CAAA;gBAIX,8BAA8B,GAAG,MAAM,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC,CAAA;gBAExE,yEAAyE;gBACzE,yEAAyE;gBACzE,oCAAoC;gBAEpC,KAAS,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;oBAClC,OAAO,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAA;oBACrB,KAAA,OAAoB,IAAA,oBAAa,EAAC,OAAO,EAAE,MAAM,EAAE,OAAO,CAAC,IAAA,EAA1D,MAAM,QAAA,EAAE,OAAO,QAAA,CAA2C;oBAE3D,KAAK,GAAG,OAAO,CAAC,GAAG,CAAC,OAAO,CAAW,CAAA;oBACtC,OAAO,GAAG,OAAO,CAAC,GAAG,CAAC,SAAS,CAAY,CAAA;oBAC3C,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,OAAO,GAAG,MAAM,GAAG,GAAG,EAAE,CAAC,CAAC,CAAA;oBACvC,UAAU,GAAG,OAAO,CAAC,KAAK,CAAA;oBAC1B,IAAI,GAAG,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,CAAA;oBAExC,IAAI,GAAG,CAAC,CAAA;oBACZ,KAAS,MAAI,CAAC,EAAE,GAAC,GAAG,IAAI,CAAC,MAAM,EAAE,GAAC,EAAE,EAAE;wBAC9B,IAAI,GAAG,IAAI,CAAC,GAAC,CAAC,CAAA;wBACZ,KAAK,GAAK,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,MAAtB,CAAsB;wBACnC,GAAG,CAAC,SAAS;4BACX,YAAY,CAAC,IAAI,CAAC;gCAClB,kBAAkB,CAAC,IAAI,CAAC,OAAO,CAAC,MAAM,EAAE,EAAE,CAAC,CAAC;gCAC5C,MAAM,CAAA;wBAEF,WAAS,QAAQ,CAAC,KAAK,CAAC,CAAA;wBACxB,MAAM,GAAG,GAAG,CAAC,KAAK,CAAC,GAAG,QAAM,CAAA;wBAClC,GAAG,CAAC,QAAQ,CACV,MAAM,EACN,MAAM,GAAG,CAAC,CAAC,KAAK,GAAG,IAAI,CAAC,GAAG,KAAK,CAAC,GAAG,QAAM,EAC1C,CAAC,EACD,CAAC,KAAK,GAAG,KAAK,CAAC,GAAG,QAAM,CACzB,CAAA;wBACD,IAAI,IAAI,KAAK,CAAA;qBACd;oBAEK,eAAe,GAAG,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,MAAM,CAAC,CAAA;oBAC7C,eAAe,GAAG,GAAG,CAAA;oBAC3B,IAAI,mBAAmB,EAAE;wBACnB,SAAO,CAAC,CAAA;wBACZ,KAAS,MAAI,CAAC,EAAE,GAAC,GAAG,eAAe,CAAC,MAAM,EAAE,GAAC,EAAE,EAAE;4BACzC,IAAI,GAAG,eAAe,CAAC,GAAC,CAAC,CAAA;4BACvB,KAAK,GAAK,OAAO,CAAC,MAAM,CAAC,IAAI,CAAC,MAAzB,CAAyB;4BACtC,GAAG,CAAC,SAAS,GAAG,YAAY,CAAC,IAAI,CAAC,CAAA;4BAClC,GAAG,CAAC,QAAQ,CACV,MAAM,GAAG,GAAG,GAAG,8BAA8B,EAC7C,eAAe,GAAG,iBAAiB,CAAC,MAAI,CAAC,EACzC,GAAG,EACH,iBAAiB,CAAC,KAAK,CAAC,CACzB,CAAA;4BACD,MAAI,IAAI,KAAK,CAAA;yBACd;qBACF;oBAED,IAAI,cAAc,EAAE;wBACd,KAAK,GAAG,CAAC,CAAA;wBACT,GAAG,GAAG,CAAC,CAAA;wBACP,OAAO,GAAG,EAAE,CAAA;wBAChB,KAAS,MAAI,CAAC,EAAE,GAAC,GAAG,eAAe,CAAC,MAAM,EAAE,GAAC,EAAE,EAAE;4BACzC,IAAI,GAAG,eAAe,CAAC,GAAC,CAAC,CAAA;4BACvB,KAAK,GAAK,OAAO,CAAC,MAAM,CAAC,IAAI,CAAC,MAAzB,CAAyB;4BACtC,KAAK,IAAI,KAAK,CAAA;4BACd,IAAI,KAAK,GAAG,GAAG,EAAE;gCACf,GAAG,GAAG,KAAK,CAAA;gCACX,OAAO,GAAG,IAAI,CAAA;6BACf;yBACF;wBAIK,wBAAwB,GAAG,IAAI,CAAC,GAAG,CAAC,UAAU,EAAE,SAAS,CAAC,CAAA;wBAChE,IACE,KAAK,GAAG,wBAAwB,GAAG,kBAAkB;4BACrD,wBAAwB,GAAG,CAAC,EAC5B;4BACA,GAAG,CAAC,SAAS,GAAG,YAAY,CAAC,OAAO,CAAC,CAAA;4BACrC,GAAG,CAAC,SAAS,EAAE,CAAA;4BACT,CAAC,GAAG,MAAM,GAAG,8BAA8B,CAAA;4BACjD,GAAG,CAAC,MAAM,CAAC,CAAC,GAAG,GAAG,EAAE,CAAC,CAAC,CAAA;4BACtB,GAAG,CAAC,MAAM,CAAC,CAAC,GAAG,GAAG,EAAE,CAAC,CAAC,CAAA;4BACtB,GAAG,CAAC,MAAM,CAAC,CAAC,EAAE,eAAe,CAAC,CAAA;4BAC9B,GAAG,CAAC,IAAI,EAAE,CAAA;yBACX;qBACF;oBACD,SAAS,GAAG,UAAU,CAAA;iBACvB;gBAED,IAAI,QAAQ,EAAE;oBACZ,KAAS,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;wBAC/B,CAAC,GAAG,KAAK,CAAC,CAAC,CAAC,CAAA;wBACZ,KAAA,OAAgB,IAAA,eAAQ,EAC5B,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,EACd,CAAC,CAAC,GAAG,CAAC,KAAK,CAAC,EACZ,MAAM,EACN,OAAO,CACR,IAAA,EALM,IAAI,QAAA,EAAE,KAAK,QAAA,CAKjB;wBAED,GAAG,CAAC,SAAS,EAAE,CAAA;wBACT,GAAG,GAAG,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAW,CAAA;wBAC/B,EAAE,GAAG,CAAC,CAAC,GAAG,CAAC,IAAI,CAAW,CAAA;wBAC1B,GAAG,GAAG,uBAAuB,CAAA;wBAC7B,GAAG,GAAG,uBAAuB,CAAA;wBAC7B,OAAO,GAAG,uBAAuB,CAAA;wBAEvC,IAAI,EAAE,KAAK,GAAG,EAAE;4BACd,GAAG,CAAC,WAAW,GAAG,GAAG,CAAA;yBACtB;6BAAM,IAAI,EAAE,KAAK,GAAG,EAAE;4BACrB,GAAG,CAAC,WAAW,GAAG,GAAG,CAAA;yBACtB;6BAAM,IAAI,GAAG,KAAK,CAAC,EAAE;4BACpB,GAAG,CAAC,WAAW,GAAG,GAAG,CAAA;yBACtB;6BAAM,IAAI,GAAG,KAAK,CAAC,CAAC,EAAE;4BACrB,GAAG,CAAC,WAAW,GAAG,GAAG,CAAA;yBACtB;6BAAM;4BACL,GAAG,CAAC,WAAW,GAAG,OAAO,CAAA;yBAC1B;wBAED,GAAG,CAAC,SAAS,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAA;wBAC5C,GAAG,CAAC,MAAM,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,GAAG,CAAC,CAAC,CAAA;wBACrC,GAAG,CAAC,aAAa,CAAC,IAAI,EAAE,CAAC,EAAE,KAAK,EAAE,CAAC,EAAE,KAAK,EAAE,MAAM,GAAG,MAAM,GAAG,CAAC,CAAC,CAAA;wBAChE,GAAG,CAAC,MAAM,EAAE,CAAA;qBACb;iBACF;gBAED,IAAI,mBAAmB,EAAE;oBACvB,GAAG,CAAC,SAAS,GAAG,CAAC,CAAA;oBACjB,GAAG,CAAC,WAAW,GAAG,uBAAuB,CAAA;oBACzC,KAAK,CAAC,MAAM,CAAC,OAAO,CAAC,UAAA,IAAI;wBACvB,GAAG,CAAC,SAAS,EAAE,CAAA;wBACf,GAAG,CAAC,MAAM,CAAC,CAAC,EAAE,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;wBACpC,GAAG,CAAC,MAAM,CAAC,KAAK,EAAE,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;wBACxC,GAAG,CAAC,MAAM,EAAE,CAAA;oBACd,CAAC,CAAC,CAAA;iBACH;;;;KACF;IACH,0BAAC;AAAD,CAAC,AAxOD,CAAiD,kCAAkB,GAwOlE"}
+{"version":3,"file":"SNPCoverageRenderer.js","sourceRoot":"","sources":["../../src/SNPCoverageRenderer/SNPCoverageRenderer.ts"],"names":[],"mappings":";;AAAA,yCAAqD;AACrD,6CAAqE;AACrE,+DAA4D;AAE5D,0DAM+B;AA2B/B,MAAqB,mBAAoB,SAAQ,kCAAkB;IACjE,4EAA4E;IAC5E,kDAAkD;IAClD,KAAK,CAAC,IAAI,CACR,GAA6B,EAC7B,KAAyC;QAEzC,MAAM,EACJ,QAAQ,EACR,OAAO,EACP,OAAO,EACP,mBAAmB,EACnB,kBAAkB,GAAG,EAAE,EACvB,SAAS,EACT,MAAM,EAAE,gBAAgB,EACxB,KAAK,EAAE,WAAW,EAClB,MAAM,EAAE,GAAG,EACX,KAAK,GACN,GAAG,KAAK,CAAA;QACT,MAAM,KAAK,GAAG,IAAA,uBAAkB,EAAC,WAAW,CAAC,CAAA;QAC7C,MAAM,CAAC,MAAM,CAAC,GAAG,OAAO,CAAA;QACxB,MAAM,KAAK,GAAG,CAAC,MAAM,CAAC,GAAG,GAAG,MAAM,CAAC,KAAK,CAAC,GAAG,OAAO,CAAA;QAEnD,yEAAyE;QACzE,oEAAoE;QACpE,iDAAiD;QACjD,MAAM,MAAM,GAAG,sCAAsB,CAAA;QACrC,MAAM,MAAM,GAAG,gBAAgB,GAAG,MAAM,GAAG,CAAC,CAAA;QAE5C,MAAM,EAAE,MAAM,EAAE,GAAG,SAAS,CAAA;QAC5B,IAAI,CAAC,MAAM,EAAE;YACX,OAAM;SACP;QACD,MAAM,IAAI,GAAG,EAAE,GAAG,SAAS,EAAE,KAAK,EAAE,CAAC,CAAC,EAAE,MAAM,CAAC,EAAE,CAAA;QACjD,MAAM,SAAS,GAAG,IAAA,wBAAQ,EAAC,IAAI,CAAC,CAAA;QAEhC,mEAAmE;QACnE,MAAM,kBAAkB,GAAG,IAAA,wBAAQ,EAAC;YAClC,GAAG,IAAI;YACP,KAAK,EAAE,CAAC,CAAC,EAAE,MAAM,GAAG,CAAC,CAAC;YACtB,SAAS,EAAE,QAAQ;SACpB,CAAC,CAAA;QACF,MAAM,OAAO,GAAG,IAAA,yBAAS,EAAC,SAAS,CAAC,SAAS,CAAC,CAAA;QAE9C,MAAM,kBAAkB,GAAG,IAAA,8BAAc,EAAC,GAAG,EAAE,oBAAoB,CAAC,CAAA;QACpE,MAAM,mBAAmB,GAAG,IAAA,8BAAc,EAAC,GAAG,EAAE,qBAAqB,CAAC,CAAA;QACtE,MAAM,QAAQ,GAAG,IAAA,8BAAc,EAAC,GAAG,EAAE,UAAU,CAAC,CAAA;QAChD,MAAM,cAAc,GAAG,IAAA,8BAAc,EAAC,GAAG,EAAE,gBAAgB,CAAC,CAAA;QAE5D,sEAAsE;QACtE,MAAM,GAAG,GAAG,CAAC,CAAS,EAAE,EAAE,CAAC,MAAM,GAAG,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,GAAG,MAAM,CAAA;QAChE,MAAM,QAAQ,GAAG,CAAC,CAAS,EAAE,EAAE,CAAC,GAAG,CAAC,OAAO,CAAC,GAAG,GAAG,CAAC,CAAC,CAAC,CAAA;QAErD,MAAM,YAAY,GAAG,CAAC,CAAS,EAAE,EAAE,CACjC,MAAM,GAAG,CAAC,kBAAkB,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,GAAG,MAAM,CAAA;QAChD,MAAM,iBAAiB,GAAG,CAAC,CAAS,EAAE,EAAE,CACtC,YAAY,CAAC,IAAA,yBAAS,EAAC,QAAQ,CAAC,CAAC,GAAG,YAAY,CAAC,CAAC,CAAC,CAAA;QAErD,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAC,OAAO,CAAA;QAC/B,MAAM,YAAY,GAA8B;YAC9C,CAAC,EAAE,KAAK,CAAC,CAAC,CAAC,IAAI;YACf,CAAC,EAAE,KAAK,CAAC,CAAC,CAAC,IAAI;YACf,CAAC,EAAE,KAAK,CAAC,CAAC,CAAC,IAAI;YACf,CAAC,EAAE,KAAK,CAAC,CAAC,CAAC,IAAI;YACf,KAAK,EAAE,WAAW;YAClB,SAAS,EAAE,QAAQ;YACnB,QAAQ,EAAE,MAAM;YAChB,QAAQ,EAAE,KAAK;YACf,IAAI,EAAE,KAAK;YACX,MAAM,EAAE,MAAM;YACd,GAAG,EAAE,WAAW;SACjB,CAAA;QAED,MAAM,KAAK,GAAG,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,CAAA;QACpC,MAAM,QAAQ,GAAG,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,MAAM,CAAC,KAAK,MAAM,CAAC,CAAA;QAC5D,MAAM,KAAK,GAAG,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,MAAM,CAAC,KAAK,MAAM,CAAC,CAAA;QAEzD,wEAAwE;QACxE,+CAA+C;QAC/C,GAAG,CAAC,SAAS,GAAG,YAAY,CAAC,KAAK,CAAA;QAClC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;YACxC,MAAM,OAAO,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAA;YAC3B,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,IAAA,oBAAa,EAAC,OAAO,EAAE,MAAM,EAAE,OAAO,CAAC,CAAA;YACjE,MAAM,CAAC,GAAG,OAAO,GAAG,MAAM,GAAG,GAAG,CAAA;YAChC,MAAM,KAAK,GAAG,OAAO,CAAC,GAAG,CAAC,OAAO,CAAW,CAAA;YAC5C,GAAG,CAAC,QAAQ,CAAC,MAAM,EAAE,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC,EAAE,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAA;SACrD;QAED,0EAA0E;QAC1E,2EAA2E;QAC3E,0EAA0E;QAC1E,0EAA0E;QAC1E,wEAAwE;QACxE,IAAI,SAAS,GAAG,CAAC,CAAA;QAEjB,wEAAwE;QACxE,+DAA+D;QAC/D,MAAM,8BAA8B,GAAG,MAAM,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC,CAAA;QAExE,yEAAyE;QACzE,yEAAyE;QACzE,oCAAoC;QAEpC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;YACxC,MAAM,OAAO,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAA;YAC3B,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,IAAA,oBAAa,EAAC,OAAO,EAAE,MAAM,EAAE,OAAO,CAAC,CAAA;YAEjE,MAAM,KAAK,GAAG,OAAO,CAAC,GAAG,CAAC,OAAO,CAAW,CAAA;YAC5C,MAAM,OAAO,GAAG,OAAO,CAAC,GAAG,CAAC,SAAS,CAAY,CAAA;YACjD,MAAM,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,OAAO,GAAG,MAAM,GAAG,GAAG,EAAE,CAAC,CAAC,CAAA;YAC7C,MAAM,UAAU,GAAG,OAAO,CAAC,KAAK,CAAA;YAChC,MAAM,IAAI,GAAG,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,CAAA;YAE5C,IAAI,IAAI,GAAG,CAAC,CAAA;YACZ,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;gBACpC,MAAM,IAAI,GAAG,IAAI,CAAC,CAAC,CAAC,CAAA;gBACpB,MAAM,EAAE,KAAK,EAAE,GAAG,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,CAAA;gBACnC,GAAG,CAAC,SAAS;oBACX,YAAY,CAAC,IAAI,CAAC;wBAClB,kBAAkB,CAAC,IAAI,CAAC,OAAO,CAAC,MAAM,EAAE,EAAE,CAAC,CAAC;wBAC5C,MAAM,CAAA;gBAER,MAAM,MAAM,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;gBAC9B,MAAM,MAAM,GAAG,GAAG,CAAC,KAAK,CAAC,GAAG,MAAM,CAAA;gBAClC,GAAG,CAAC,QAAQ,CACV,MAAM,EACN,MAAM,GAAG,CAAC,CAAC,KAAK,GAAG,IAAI,CAAC,GAAG,KAAK,CAAC,GAAG,MAAM,EAC1C,CAAC,EACD,CAAC,KAAK,GAAG,KAAK,CAAC,GAAG,MAAM,CACzB,CAAA;gBACD,IAAI,IAAI,KAAK,CAAA;aACd;YAED,MAAM,eAAe,GAAG,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,MAAM,CAAC,CAAA;YACnD,MAAM,eAAe,GAAG,GAAG,CAAA;YAC3B,IAAI,mBAAmB,EAAE;gBACvB,IAAI,IAAI,GAAG,CAAC,CAAA;gBACZ,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,eAAe,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;oBAC/C,MAAM,IAAI,GAAG,eAAe,CAAC,CAAC,CAAC,CAAA;oBAC/B,MAAM,EAAE,KAAK,EAAE,GAAG,OAAO,CAAC,MAAM,CAAC,IAAI,CAAC,CAAA;oBACtC,GAAG,CAAC,SAAS,GAAG,YAAY,CAAC,IAAI,CAAC,CAAA;oBAClC,GAAG,CAAC,QAAQ,CACV,MAAM,GAAG,GAAG,GAAG,8BAA8B,EAC7C,eAAe,GAAG,iBAAiB,CAAC,IAAI,CAAC,EACzC,GAAG,EACH,iBAAiB,CAAC,KAAK,CAAC,CACzB,CAAA;oBACD,IAAI,IAAI,KAAK,CAAA;iBACd;aACF;YAED,IAAI,cAAc,EAAE;gBAClB,IAAI,KAAK,GAAG,CAAC,CAAA;gBACb,IAAI,GAAG,GAAG,CAAC,CAAA;gBACX,IAAI,OAAO,GAAG,EAAE,CAAA;gBAChB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,eAAe,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;oBAC/C,MAAM,IAAI,GAAG,eAAe,CAAC,CAAC,CAAC,CAAA;oBAC/B,MAAM,EAAE,KAAK,EAAE,GAAG,OAAO,CAAC,MAAM,CAAC,IAAI,CAAC,CAAA;oBACtC,KAAK,IAAI,KAAK,CAAA;oBACd,IAAI,KAAK,GAAG,GAAG,EAAE;wBACf,GAAG,GAAG,KAAK,CAAA;wBACX,OAAO,GAAG,IAAI,CAAA;qBACf;iBACF;gBAED,mEAAmE;gBACnE,8DAA8D;gBAC9D,MAAM,wBAAwB,GAAG,IAAI,CAAC,GAAG,CAAC,UAAU,EAAE,SAAS,CAAC,CAAA;gBAChE,IACE,KAAK,GAAG,wBAAwB,GAAG,kBAAkB;oBACrD,wBAAwB,GAAG,CAAC,EAC5B;oBACA,GAAG,CAAC,SAAS,GAAG,YAAY,CAAC,OAAO,CAAC,CAAA;oBACrC,GAAG,CAAC,SAAS,EAAE,CAAA;oBACf,MAAM,CAAC,GAAG,MAAM,GAAG,8BAA8B,CAAA;oBACjD,GAAG,CAAC,MAAM,CAAC,CAAC,GAAG,GAAG,EAAE,CAAC,CAAC,CAAA;oBACtB,GAAG,CAAC,MAAM,CAAC,CAAC,GAAG,GAAG,EAAE,CAAC,CAAC,CAAA;oBACtB,GAAG,CAAC,MAAM,CAAC,CAAC,EAAE,eAAe,CAAC,CAAA;oBAC9B,GAAG,CAAC,IAAI,EAAE,CAAA;iBACX;aACF;YACD,SAAS,GAAG,UAAU,CAAA;SACvB;QAED,IAAI,QAAQ,EAAE;YACZ,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;gBACrC,MAAM,CAAC,GAAG,KAAK,CAAC,CAAC,CAAC,CAAA;gBAClB,MAAM,CAAC,IAAI,EAAE,KAAK,CAAC,GAAG,IAAA,eAAQ,EAC5B,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,EACd,CAAC,CAAC,GAAG,CAAC,KAAK,CAAC,EACZ,MAAM,EACN,OAAO,CACR,CAAA;gBAED,GAAG,CAAC,SAAS,EAAE,CAAA;gBACf,MAAM,GAAG,GAAG,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAW,CAAA;gBACrC,MAAM,EAAE,GAAG,CAAC,CAAC,GAAG,CAAC,IAAI,CAAW,CAAA;gBAChC,MAAM,GAAG,GAAG,uBAAuB,CAAA;gBACnC,MAAM,GAAG,GAAG,uBAAuB,CAAA;gBACnC,MAAM,OAAO,GAAG,uBAAuB,CAAA;gBAEvC,IAAI,EAAE,KAAK,GAAG,EAAE;oBACd,GAAG,CAAC,WAAW,GAAG,GAAG,CAAA;iBACtB;qBAAM,IAAI,EAAE,KAAK,GAAG,EAAE;oBACrB,GAAG,CAAC,WAAW,GAAG,GAAG,CAAA;iBACtB;qBAAM,IAAI,GAAG,KAAK,CAAC,EAAE;oBACpB,GAAG,CAAC,WAAW,GAAG,GAAG,CAAA;iBACtB;qBAAM,IAAI,GAAG,KAAK,CAAC,CAAC,EAAE;oBACrB,GAAG,CAAC,WAAW,GAAG,GAAG,CAAA;iBACtB;qBAAM;oBACL,GAAG,CAAC,WAAW,GAAG,OAAO,CAAA;iBAC1B;gBAED,GAAG,CAAC,SAAS,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAA;gBAC5C,GAAG,CAAC,MAAM,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,GAAG,CAAC,CAAC,CAAA;gBACrC,GAAG,CAAC,aAAa,CAAC,IAAI,EAAE,CAAC,EAAE,KAAK,EAAE,CAAC,EAAE,KAAK,EAAE,MAAM,GAAG,MAAM,GAAG,CAAC,CAAC,CAAA;gBAChE,GAAG,CAAC,MAAM,EAAE,CAAA;aACb;SACF;QAED,IAAI,mBAAmB,EAAE;YACvB,GAAG,CAAC,SAAS,GAAG,CAAC,CAAA;YACjB,GAAG,CAAC,WAAW,GAAG,uBAAuB,CAAA;YACzC,KAAK,CAAC,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE;gBAC1B,GAAG,CAAC,SAAS,EAAE,CAAA;gBACf,GAAG,CAAC,MAAM,CAAC,CAAC,EAAE,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;gBACpC,GAAG,CAAC,MAAM,CAAC,KAAK,EAAE,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;gBACxC,GAAG,CAAC,MAAM,EAAE,CAAA;YACd,CAAC,CAAC,CAAA;SACH;IACH,CAAC;CACF;AAvOD,sCAuOC"}

package/dist/SNPCoverageRenderer/configSchema.js

@@ -1,6 +1,6 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-var configuration_1 = require("@jbrowse/core/configuration");
+const configuration_1 = require("@jbrowse/core/configuration");
 exports.default = (0, configuration_1.ConfigurationSchema)('SNPCoverageRenderer', {
     clipColor: {
         type: 'color',

package/dist/SNPCoverageRenderer/configSchema.js.map

@@ -1 +1 @@
-{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/SNPCoverageRenderer/configSchema.js"],"names":[],"mappings":";;AAAA,6DAAiE;AAEjE,kBAAe,IAAA,mCAAmB,EAChC,qBAAqB,EACrB;IACE,SAAS,EAAE;QACT,IAAI,EAAE,OAAO;QACb,WAAW,EAAE,kCAAkC;QAC/C,YAAY,EAAE,KAAK;KACpB;IACD,kBAAkB,EAAE;QAClB,IAAI,EAAE,QAAQ;QACd,WAAW,EACT,+DAA+D;QACjE,YAAY,EAAE,GAAG;KAClB;IACD,QAAQ,EAAE;QACR,IAAI,EAAE,SAAS;QACf,WAAW,EAAE,6CAA6C;QAC1D,YAAY,EAAE,IAAI;KACnB;IACD,mBAAmB,EAAE;QACnB,IAAI,EAAE,SAAS;QACf,WAAW,EACT,iJAAiJ;QACnJ,YAAY,EAAE,IAAI;KACnB;IACD,cAAc,EAAE;QACd,IAAI,EAAE,SAAS;QACf,WAAW,EACT,8DAA8D;QAChE,YAAY,EAAE,IAAI;KACnB;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,CAC1B,CAAA"}
+{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/SNPCoverageRenderer/configSchema.js"],"names":[],"mappings":";;AAAA,+DAAiE;AAEjE,kBAAe,IAAA,mCAAmB,EAChC,qBAAqB,EACrB;IACE,SAAS,EAAE;QACT,IAAI,EAAE,OAAO;QACb,WAAW,EAAE,kCAAkC;QAC/C,YAAY,EAAE,KAAK;KACpB;IACD,kBAAkB,EAAE;QAClB,IAAI,EAAE,QAAQ;QACd,WAAW,EACT,+DAA+D;QACjE,YAAY,EAAE,GAAG;KAClB;IACD,QAAQ,EAAE;QACR,IAAI,EAAE,SAAS;QACf,WAAW,EAAE,6CAA6C;QAC1D,YAAY,EAAE,IAAI;KACnB;IACD,mBAAmB,EAAE;QACnB,IAAI,EAAE,SAAS;QACf,WAAW,EACT,iJAAiJ;QACnJ,YAAY,EAAE,IAAI;KACnB;IACD,cAAc,EAAE;QACd,IAAI,EAAE,SAAS;QACf,WAAW,EACT,8DAA8D;QAChE,YAAY,EAAE,IAAI;KACnB;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,CAC1B,CAAA"}

package/dist/SNPCoverageRenderer/index.js

@@ -4,20 +4,18 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.configSchema = void 0;
-var configuration_1 = require("@jbrowse/core/configuration");
-var configSchema_1 = __importDefault(require("./configSchema"));
-var SNPCoverageRenderer_1 = __importDefault(require("./SNPCoverageRenderer"));
-var plugin_wiggle_1 = require("@jbrowse/plugin-wiggle");
+const configuration_1 = require("@jbrowse/core/configuration");
+const configSchema_1 = __importDefault(require("./configSchema"));
+const SNPCoverageRenderer_1 = __importDefault(require("./SNPCoverageRenderer"));
+const plugin_wiggle_1 = require("@jbrowse/plugin-wiggle");
 exports.configSchema = (0, configuration_1.ConfigurationSchema)('SNPCoverageRenderer', {}, { baseConfiguration: configSchema_1.default, explicitlyTyped: true });
 function register(pluginManager) {
-    pluginManager.addRendererType(function () {
-        return new SNPCoverageRenderer_1.default({
-            name: 'SNPCoverageRenderer',
-            ReactComponent: plugin_wiggle_1.WiggleRendering,
-            configSchema: exports.configSchema,
-            pluginManager: pluginManager,
-        });
-    });
+    pluginManager.addRendererType(() => new SNPCoverageRenderer_1.default({
+        name: 'SNPCoverageRenderer',
+        ReactComponent: plugin_wiggle_1.WiggleRendering,
+        configSchema: exports.configSchema,
+        pluginManager,
+    }));
 }
 exports.default = register;
 //# sourceMappingURL=index.js.map

package/dist/SNPCoverageRenderer/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/SNPCoverageRenderer/index.ts"],"names":[],"mappings":";;;;;;AAAA,6DAAiE;AACjE,gEAAyC;AAEzC,8EAAuD;AAEvD,wDAAwD;AAE3C,QAAA,YAAY,GAAG,IAAA,mCAAmB,EAC7C,qBAAqB,EACrB,EAAE,EACF,EAAE,iBAAiB,EAAE,sBAAY,EAAE,eAAe,EAAE,IAAI,EAAE,CAC3D,CAAA;AAED,SAAwB,QAAQ,CAAC,aAA4B;IAC3D,aAAa,CAAC,eAAe,CAC3B;QACE,OAAA,IAAI,6BAAmB,CAAC;YACtB,IAAI,EAAE,qBAAqB;YAC3B,cAAc,EAAE,+BAAe;YAC/B,YAAY,sBAAA;YACZ,aAAa,eAAA;SACd,CAAC;IALF,CAKE,CACL,CAAA;AACH,CAAC;AAVD,2BAUC"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/SNPCoverageRenderer/index.ts"],"names":[],"mappings":";;;;;;AAAA,+DAAiE;AACjE,kEAAyC;AAEzC,gFAAuD;AAEvD,0DAAwD;AAE3C,QAAA,YAAY,GAAG,IAAA,mCAAmB,EAC7C,qBAAqB,EACrB,EAAE,EACF,EAAE,iBAAiB,EAAE,sBAAY,EAAE,eAAe,EAAE,IAAI,EAAE,CAC3D,CAAA;AAED,SAAwB,QAAQ,CAAC,aAA4B;IAC3D,aAAa,CAAC,eAAe,CAC3B,GAAG,EAAE,CACH,IAAI,6BAAmB,CAAC;QACtB,IAAI,EAAE,qBAAqB;QAC3B,cAAc,EAAE,+BAAe;QAC/B,YAAY,EAAZ,oBAAY;QACZ,aAAa;KACd,CAAC,CACL,CAAA;AACH,CAAC;AAVD,2BAUC"}

package/dist/index.js

@@ -1,19 +1,4 @@
 "use strict";
-var __extends = (this && this.__extends) || (function () {
-    var extendStatics = function (d, b) {
-        extendStatics = Object.setPrototypeOf ||
-            ({ __proto__: [] } instanceof Array && function (d, b) { d.__proto__ = b; }) ||
-            function (d, b) { for (var p in b) if (Object.prototype.hasOwnProperty.call(b, p)) d[p] = b[p]; };
-        return extendStatics(d, b);
-    };
-    return function (d, b) {
-        if (typeof b !== "function" && b !== null)
-            throw new TypeError("Class extends value " + String(b) + " is not a constructor or null");
-        extendStatics(d, b);
-        function __() { this.constructor = d; }
-        d.prototype = b === null ? Object.create(b) : (__.prototype = b.prototype, new __());
-    };
-})();
 var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
     if (k2 === undefined) k2 = k;
     var desc = Object.getOwnPropertyDescriptor(m, k);
@@ -42,30 +27,28 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.MismatchParser = void 0;
-var Plugin_1 = __importDefault(require("@jbrowse/core/Plugin"));
-var MismatchParser = __importStar(require("./BamAdapter/MismatchParser"));
+const Plugin_1 = __importDefault(require("@jbrowse/core/Plugin"));
+const MismatchParser = __importStar(require("./BamAdapter/MismatchParser"));
 exports.MismatchParser = MismatchParser;
-var CramAdapter_1 = __importDefault(require("./CramAdapter"));
-var BamAdapter_1 = __importDefault(require("./BamAdapter"));
-var HtsgetBamAdapter_1 = __importDefault(require("./HtsgetBamAdapter"));
-var SNPCoverageAdapter_1 = __importDefault(require("./SNPCoverageAdapter"));
-var SNPCoverageRenderer_1 = __importDefault(require("./SNPCoverageRenderer"));
-var PileupRenderer_1 = __importDefault(require("./PileupRenderer"));
-var LinearAlignmentsDisplay_1 = __importDefault(require("./LinearAlignmentsDisplay"));
-var LinearSNPCoverageDisplay_1 = __importDefault(require("./LinearSNPCoverageDisplay"));
-var LinearPileupDisplay_1 = __importDefault(require("./LinearPileupDisplay"));
-var AlignmentsTrack_1 = __importDefault(require("./AlignmentsTrack"));
-var AlignmentsFeatureDetail_1 = __importDefault(require("./AlignmentsFeatureDetail"));
-var rpcMethods_1 = require("./PileupRPC/rpcMethods");
-var tracks_1 = require("@jbrowse/core/util/tracks");
-var AlignmentsPlugin = /** @class */ (function (_super) {
-    __extends(AlignmentsPlugin, _super);
-    function AlignmentsPlugin() {
-        var _this = _super !== null && _super.apply(this, arguments) || this;
-        _this.name = 'AlignmentsPlugin';
-        return _this;
+const CramAdapter_1 = __importDefault(require("./CramAdapter"));
+const BamAdapter_1 = __importDefault(require("./BamAdapter"));
+const HtsgetBamAdapter_1 = __importDefault(require("./HtsgetBamAdapter"));
+const SNPCoverageAdapter_1 = __importDefault(require("./SNPCoverageAdapter"));
+const SNPCoverageRenderer_1 = __importDefault(require("./SNPCoverageRenderer"));
+const PileupRenderer_1 = __importDefault(require("./PileupRenderer"));
+const LinearAlignmentsDisplay_1 = __importDefault(require("./LinearAlignmentsDisplay"));
+const LinearSNPCoverageDisplay_1 = __importDefault(require("./LinearSNPCoverageDisplay"));
+const LinearPileupDisplay_1 = __importDefault(require("./LinearPileupDisplay"));
+const AlignmentsTrack_1 = __importDefault(require("./AlignmentsTrack"));
+const AlignmentsFeatureDetail_1 = __importDefault(require("./AlignmentsFeatureDetail"));
+const rpcMethods_1 = require("./PileupRPC/rpcMethods");
+const tracks_1 = require("@jbrowse/core/util/tracks");
+class AlignmentsPlugin extends Plugin_1.default {
+    constructor() {
+        super(...arguments);
+        this.name = 'AlignmentsPlugin';
     }
-    AlignmentsPlugin.prototype.install = function (pluginManager) {
+    install(pluginManager) {
         ;
         [
             BamAdapter_1.default,
@@ -79,13 +62,13 @@ var AlignmentsPlugin = /** @class */ (function (_super) {
             SNPCoverageRenderer_1.default,
             LinearAlignmentsDisplay_1.default,
             AlignmentsFeatureDetail_1.default,
-        ].map(function (f) { return f(pluginManager); });
-        pluginManager.addToExtensionPoint('Core-guessAdapterForLocation', function (adapterGuesser) {
-            return function (file, index, adapterHint) {
-                var regexGuess = /\.cram$/i;
-                var adapterName = 'CramAdapter';
-                var fileName = (0, tracks_1.getFileName)(file);
-                var obj = {
+        ].map(f => f(pluginManager));
+        pluginManager.addToExtensionPoint('Core-guessAdapterForLocation', (adapterGuesser) => {
+            return (file, index, adapterHint) => {
+                const regexGuess = /\.cram$/i;
+                const adapterName = 'CramAdapter';
+                const fileName = (0, tracks_1.getFileName)(file);
+                const obj = {
                     type: adapterName,
                     cramLocation: file,
                     craiLocation: index || (0, tracks_1.makeIndex)(file, '.crai'),
@@ -99,13 +82,13 @@ var AlignmentsPlugin = /** @class */ (function (_super) {
                 return adapterGuesser(file, index, adapterHint);
             };
         });
-        pluginManager.addToExtensionPoint('Core-guessAdapterForLocation', function (adapterGuesser) {
-            return function (file, index, adapterHint) {
-                var regexGuess = /\.bam$/i;
-                var adapterName = 'BamAdapter';
-                var fileName = (0, tracks_1.getFileName)(file);
-                var indexName = index && (0, tracks_1.getFileName)(index);
-                var obj = {
+        pluginManager.addToExtensionPoint('Core-guessAdapterForLocation', (adapterGuesser) => {
+            return (file, index, adapterHint) => {
+                const regexGuess = /\.bam$/i;
+                const adapterName = 'BamAdapter';
+                const fileName = (0, tracks_1.getFileName)(file);
+                const indexName = index && (0, tracks_1.getFileName)(index);
+                const obj = {
                     type: adapterName,
                     bamLocation: file,
                     index: {
@@ -122,18 +105,17 @@ var AlignmentsPlugin = /** @class */ (function (_super) {
                 return adapterGuesser(file, index, adapterHint);
             };
         });
-        pluginManager.addToExtensionPoint('Core-guessTrackTypeForLocation', function (trackTypeGuesser) {
-            return function (adapterName) {
+        pluginManager.addToExtensionPoint('Core-guessTrackTypeForLocation', (trackTypeGuesser) => {
+            return (adapterName) => {
                 if (adapterName === 'BamAdapter' || adapterName === 'CramAdapter') {
                     return 'AlignmentsTrack';
                 }
                 return trackTypeGuesser(adapterName);
             };
         });
-        pluginManager.addRpcMethod(function () { return new rpcMethods_1.PileupGetGlobalValueForTag(pluginManager); });
-        pluginManager.addRpcMethod(function () { return new rpcMethods_1.PileupGetVisibleModifications(pluginManager); });
-    };
-    return AlignmentsPlugin;
-}(Plugin_1.default));
+        pluginManager.addRpcMethod(() => new rpcMethods_1.PileupGetGlobalValueForTag(pluginManager));
+        pluginManager.addRpcMethod(() => new rpcMethods_1.PileupGetVisibleModifications(pluginManager));
+    }
+}
 exports.default = AlignmentsPlugin;
 //# sourceMappingURL=index.js.map

package/dist/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AACA,gEAAyC;AAEzC,0EAA6D;AA2BpD,wCAAc;AAxBvB,8DAAuC;AACvC,4DAAuC;AACvC,wEAAkD;AAClD,4EAAsD;AACtD,8EAAwD;AACxD,oEAA8C;AAC9C,sFAAgE;AAChE,wFAAkE;AAClE,8EAAwD;AACxD,sEAAgD;AAChD,sFAAgE;AAEhE,qDAG+B;AAC/B,oDAMkC;AAKlC;IAA8C,oCAAM;IAApD;QAAA,qEA6FC;QA5FC,UAAI,GAAG,kBAAkB,CAAA;;IA4F3B,CAAC;IA1FC,kCAAO,GAAP,UAAQ,aAA4B;QAClC,CAAC;QAAA;YACC,oBAAY;YACZ,qBAAW;YACX,6BAAoB;YACpB,kCAAyB;YACzB,yBAAgB;YAChB,4BAAmB;YACnB,0BAAiB;YACjB,wBAAe;YACf,6BAAoB;YACpB,iCAAwB;YACxB,iCAAwB;SACzB,CAAC,GAAG,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,aAAa,CAAC,EAAhB,CAAgB,CAAC,CAAA;QAE5B,aAAa,CAAC,mBAAmB,CAC/B,8BAA8B,EAC9B,UAAC,cAA8B;YAC7B,OAAO,UACL,IAAkB,EAClB,KAAoB,EACpB,WAAoB;gBAEpB,IAAM,UAAU,GAAG,UAAU,CAAA;gBAC7B,IAAM,WAAW,GAAG,aAAa,CAAA;gBACjC,IAAM,QAAQ,GAAG,IAAA,oBAAW,EAAC,IAAI,CAAC,CAAA;gBAClC,IAAM,GAAG,GAAG;oBACV,IAAI,EAAE,WAAW;oBACjB,YAAY,EAAE,IAAI;oBAClB,YAAY,EAAE,KAAK,IAAI,IAAA,kBAAS,EAAC,IAAI,EAAE,OAAO,CAAC;iBAChD,CAAA;gBACD,IAAI,UAAU,CAAC,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,WAAW,EAAE;oBAC7C,OAAO,GAAG,CAAA;iBACX;qBAAM,IAAI,WAAW,KAAK,WAAW,EAAE;oBACtC,OAAO,GAAG,CAAA;iBACX;gBACD,OAAO,cAAc,CAAC,IAAI,EAAE,KAAK,EAAE,WAAW,CAAC,CAAA;YACjD,CAAC,CAAA;QACH,CAAC,CACF,CAAA;QAED,aAAa,CAAC,mBAAmB,CAC/B,8BAA8B,EAC9B,UAAC,cAA8B;YAC7B,OAAO,UACL,IAAkB,EAClB,KAAoB,EACpB,WAAoB;gBAEpB,IAAM,UAAU,GAAG,SAAS,CAAA;gBAC5B,IAAM,WAAW,GAAG,YAAY,CAAA;gBAChC,IAAM,QAAQ,GAAG,IAAA,oBAAW,EAAC,IAAI,CAAC,CAAA;gBAClC,IAAM,SAAS,GAAG,KAAK,IAAI,IAAA,oBAAW,EAAC,KAAK,CAAC,CAAA;gBAE7C,IAAM,GAAG,GAAG;oBACV,IAAI,EAAE,WAAW;oBACjB,WAAW,EAAE,IAAI;oBACjB,KAAK,EAAE;wBACL,QAAQ,EAAE,KAAK,IAAI,IAAA,kBAAS,EAAC,IAAI,EAAE,MAAM,CAAC;wBAC1C,SAAS,EAAE,IAAA,sBAAa,EAAC,SAAS,EAAE,KAAK,EAAE,KAAK,CAAC;qBAClD;iBACF,CAAA;gBACD,IAAI,UAAU,CAAC,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,WAAW,EAAE;oBAC7C,OAAO,GAAG,CAAA;iBACX;qBAAM,IAAI,WAAW,KAAK,WAAW,EAAE;oBACtC,OAAO,GAAG,CAAA;iBACX;gBACD,OAAO,cAAc,CAAC,IAAI,EAAE,KAAK,EAAE,WAAW,CAAC,CAAA;YACjD,CAAC,CAAA;QACH,CAAC,CACF,CAAA;QACD,aAAa,CAAC,mBAAmB,CAC/B,gCAAgC,EAChC,UAAC,gBAAkC;YACjC,OAAO,UAAC,WAAmB;gBACzB,IAAI,WAAW,KAAK,YAAY,IAAI,WAAW,KAAK,aAAa,EAAE;oBACjE,OAAO,iBAAiB,CAAA;iBACzB;gBACD,OAAO,gBAAgB,CAAC,WAAW,CAAC,CAAA;YACtC,CAAC,CAAA;QACH,CAAC,CACF,CAAA;QAED,aAAa,CAAC,YAAY,CACxB,cAAM,OAAA,IAAI,uCAA0B,CAAC,aAAa,CAAC,EAA7C,CAA6C,CACpD,CAAA;QACD,aAAa,CAAC,YAAY,CACxB,cAAM,OAAA,IAAI,0CAA6B,CAAC,aAAa,CAAC,EAAhD,CAAgD,CACvD,CAAA;IACH,CAAC;IACH,uBAAC;AAAD,CAAC,AA7FD,CAA8C,gBAAM,GA6FnD"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;AACA,kEAAyC;AAEzC,4EAA6D;AA2BpD,wCAAc;AAxBvB,gEAAuC;AACvC,8DAAuC;AACvC,0EAAkD;AAClD,8EAAsD;AACtD,gFAAwD;AACxD,sEAA8C;AAC9C,wFAAgE;AAChE,0FAAkE;AAClE,gFAAwD;AACxD,wEAAgD;AAChD,wFAAgE;AAEhE,uDAG+B;AAC/B,sDAMkC;AAKlC,MAAqB,gBAAiB,SAAQ,gBAAM;IAApD;;QACE,SAAI,GAAG,kBAAkB,CAAA;IA4F3B,CAAC;IA1FC,OAAO,CAAC,aAA4B;QAClC,CAAC;QAAA;YACC,oBAAY;YACZ,qBAAW;YACX,6BAAoB;YACpB,kCAAyB;YACzB,yBAAgB;YAChB,4BAAmB;YACnB,0BAAiB;YACjB,wBAAe;YACf,6BAAoB;YACpB,iCAAwB;YACxB,iCAAwB;SACzB,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,aAAa,CAAC,CAAC,CAAA;QAE5B,aAAa,CAAC,mBAAmB,CAC/B,8BAA8B,EAC9B,CAAC,cAA8B,EAAE,EAAE;YACjC,OAAO,CACL,IAAkB,EAClB,KAAoB,EACpB,WAAoB,EACpB,EAAE;gBACF,MAAM,UAAU,GAAG,UAAU,CAAA;gBAC7B,MAAM,WAAW,GAAG,aAAa,CAAA;gBACjC,MAAM,QAAQ,GAAG,IAAA,oBAAW,EAAC,IAAI,CAAC,CAAA;gBAClC,MAAM,GAAG,GAAG;oBACV,IAAI,EAAE,WAAW;oBACjB,YAAY,EAAE,IAAI;oBAClB,YAAY,EAAE,KAAK,IAAI,IAAA,kBAAS,EAAC,IAAI,EAAE,OAAO,CAAC;iBAChD,CAAA;gBACD,IAAI,UAAU,CAAC,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,WAAW,EAAE;oBAC7C,OAAO,GAAG,CAAA;iBACX;qBAAM,IAAI,WAAW,KAAK,WAAW,EAAE;oBACtC,OAAO,GAAG,CAAA;iBACX;gBACD,OAAO,cAAc,CAAC,IAAI,EAAE,KAAK,EAAE,WAAW,CAAC,CAAA;YACjD,CAAC,CAAA;QACH,CAAC,CACF,CAAA;QAED,aAAa,CAAC,mBAAmB,CAC/B,8BAA8B,EAC9B,CAAC,cAA8B,EAAE,EAAE;YACjC,OAAO,CACL,IAAkB,EAClB,KAAoB,EACpB,WAAoB,EACpB,EAAE;gBACF,MAAM,UAAU,GAAG,SAAS,CAAA;gBAC5B,MAAM,WAAW,GAAG,YAAY,CAAA;gBAChC,MAAM,QAAQ,GAAG,IAAA,oBAAW,EAAC,IAAI,CAAC,CAAA;gBAClC,MAAM,SAAS,GAAG,KAAK,IAAI,IAAA,oBAAW,EAAC,KAAK,CAAC,CAAA;gBAE7C,MAAM,GAAG,GAAG;oBACV,IAAI,EAAE,WAAW;oBACjB,WAAW,EAAE,IAAI;oBACjB,KAAK,EAAE;wBACL,QAAQ,EAAE,KAAK,IAAI,IAAA,kBAAS,EAAC,IAAI,EAAE,MAAM,CAAC;wBAC1C,SAAS,EAAE,IAAA,sBAAa,EAAC,SAAS,EAAE,KAAK,EAAE,KAAK,CAAC;qBAClD;iBACF,CAAA;gBACD,IAAI,UAAU,CAAC,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,WAAW,EAAE;oBAC7C,OAAO,GAAG,CAAA;iBACX;qBAAM,IAAI,WAAW,KAAK,WAAW,EAAE;oBACtC,OAAO,GAAG,CAAA;iBACX;gBACD,OAAO,cAAc,CAAC,IAAI,EAAE,KAAK,EAAE,WAAW,CAAC,CAAA;YACjD,CAAC,CAAA;QACH,CAAC,CACF,CAAA;QACD,aAAa,CAAC,mBAAmB,CAC/B,gCAAgC,EAChC,CAAC,gBAAkC,EAAE,EAAE;YACrC,OAAO,CAAC,WAAmB,EAAE,EAAE;gBAC7B,IAAI,WAAW,KAAK,YAAY,IAAI,WAAW,KAAK,aAAa,EAAE;oBACjE,OAAO,iBAAiB,CAAA;iBACzB;gBACD,OAAO,gBAAgB,CAAC,WAAW,CAAC,CAAA;YACtC,CAAC,CAAA;QACH,CAAC,CACF,CAAA;QAED,aAAa,CAAC,YAAY,CACxB,GAAG,EAAE,CAAC,IAAI,uCAA0B,CAAC,aAAa,CAAC,CACpD,CAAA;QACD,aAAa,CAAC,YAAY,CACxB,GAAG,EAAE,CAAC,IAAI,0CAA6B,CAAC,aAAa,CAAC,CACvD,CAAA;IACH,CAAC;CACF;AA7FD,mCA6FC"}

package/dist/shared.js

@@ -1,88 +1,33 @@
 "use strict";
-var __assign = (this && this.__assign) || function () {
-    __assign = Object.assign || function(t) {
-        for (var s, i = 1, n = arguments.length; i < n; i++) {
-            s = arguments[i];
-            for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
-                t[p] = s[p];
-        }
-        return t;
-    };
-    return __assign.apply(this, arguments);
-};
-var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
-    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
-    return new (P || (P = Promise))(function (resolve, reject) {
-        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
-        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
-        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
-        step((generator = generator.apply(thisArg, _arguments || [])).next());
-    });
-};
-var __generator = (this && this.__generator) || function (thisArg, body) {
-    var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g;
-    return g = { next: verb(0), "throw": verb(1), "return": verb(2) }, typeof Symbol === "function" && (g[Symbol.iterator] = function() { return this; }), g;
-    function verb(n) { return function (v) { return step([n, v]); }; }
-    function step(op) {
-        if (f) throw new TypeError("Generator is already executing.");
-        while (_) try {
-            if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
-            if (y = 0, t) op = [op[0] & 2, t.value];
-            switch (op[0]) {
-                case 0: case 1: t = op; break;
-                case 4: _.label++; return { value: op[1], done: false };
-                case 5: _.label++; y = op[1]; op = [0]; continue;
-                case 7: op = _.ops.pop(); _.trys.pop(); continue;
-                default:
-                    if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
-                    if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
-                    if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
-                    if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
-                    if (t[2]) _.ops.pop();
-                    _.trys.pop(); continue;
-            }
-            op = body.call(thisArg, _);
-        } catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
-        if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
-    }
-};
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.getUniqueModificationValues = exports.getUniqueTagValues = void 0;
-var util_1 = require("@jbrowse/core/util");
-var tracks_1 = require("@jbrowse/core/util/tracks");
-function getUniqueTagValues(self, colorScheme, blocks, opts) {
-    return __awaiter(this, void 0, void 0, function () {
-        var rpcManager, adapterConfig, sessionId, values;
-        return __generator(this, function (_a) {
-            switch (_a.label) {
-                case 0:
-                    rpcManager = (0, util_1.getSession)(self).rpcManager;
-                    adapterConfig = self.adapterConfig;
-                    sessionId = (0, tracks_1.getRpcSessionId)(self);
-                    return [4 /*yield*/, rpcManager.call((0, tracks_1.getRpcSessionId)(self), 'PileupGetGlobalValueForTag', __assign({ adapterConfig: adapterConfig, tag: colorScheme.tag, sessionId: sessionId, regions: blocks.contentBlocks }, opts))];
-                case 1:
-                    values = _a.sent();
-                    return [2 /*return*/, values];
-            }
-        });
+const util_1 = require("@jbrowse/core/util");
+const tracks_1 = require("@jbrowse/core/util/tracks");
+async function getUniqueTagValues(self, colorScheme, blocks, opts) {
+    const { rpcManager } = (0, util_1.getSession)(self);
+    const { adapterConfig } = self;
+    const sessionId = (0, tracks_1.getRpcSessionId)(self);
+    const values = await rpcManager.call((0, tracks_1.getRpcSessionId)(self), 'PileupGetGlobalValueForTag', {
+        adapterConfig,
+        tag: colorScheme.tag,
+        sessionId,
+        regions: blocks.contentBlocks,
+        ...opts,
     });
+    return values;
 }
 exports.getUniqueTagValues = getUniqueTagValues;
-function getUniqueModificationValues(self, adapterConfig, colorScheme, blocks, opts) {
-    return __awaiter(this, void 0, void 0, function () {
-        var rpcManager, sessionId, values;
-        return __generator(this, function (_a) {
-            switch (_a.label) {
-                case 0:
-                    rpcManager = (0, util_1.getSession)(self).rpcManager;
-                    sessionId = (0, tracks_1.getRpcSessionId)(self);
-                    return [4 /*yield*/, rpcManager.call(sessionId, 'PileupGetVisibleModifications', __assign({ adapterConfig: adapterConfig, tag: colorScheme.tag, sessionId: sessionId, regions: blocks.contentBlocks }, opts))];
-                case 1:
-                    values = _a.sent();
-                    return [2 /*return*/, values];
-            }
-        });
+async function getUniqueModificationValues(self, adapterConfig, colorScheme, blocks, opts) {
+    const { rpcManager } = (0, util_1.getSession)(self);
+    const sessionId = (0, tracks_1.getRpcSessionId)(self);
+    const values = await rpcManager.call(sessionId, 'PileupGetVisibleModifications', {
+        adapterConfig,
+        tag: colorScheme.tag,
+        sessionId,
+        regions: blocks.contentBlocks,
+        ...opts,
     });
+    return values;
 }
 exports.getUniqueModificationValues = getUniqueModificationValues;
 //# sourceMappingURL=shared.js.map

package/dist/shared.js.map

@@ -1 +1 @@
-{"version":3,"file":"shared.js","sourceRoot":"","sources":["../src/shared.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAEA,2CAA+C;AAC/C,oDAA2D;AAI3D,SAAsB,kBAAkB,CACtC,IAAkE,EAClE,WAA2C,EAC3C,MAAgB,EAChB,IAIC;;;;;;oBAEO,UAAU,GAAK,IAAA,iBAAU,EAAC,IAAI,CAAC,WAArB,CAAqB;oBAC/B,aAAa,GAAK,IAAI,cAAT,CAAS;oBACxB,SAAS,GAAG,IAAA,wBAAe,EAAC,IAAI,CAAC,CAAA;oBACxB,qBAAM,UAAU,CAAC,IAAI,CAClC,IAAA,wBAAe,EAAC,IAAI,CAAC,EACrB,4BAA4B,aAE1B,aAAa,eAAA,EACb,GAAG,EAAE,WAAW,CAAC,GAAG,EACpB,SAAS,WAAA,EACT,OAAO,EAAE,MAAM,CAAC,aAAa,IAC1B,IAAI,EAEV,EAAA;;oBAVK,MAAM,GAAG,SAUd;oBACD,sBAAO,MAAkB,EAAA;;;;CAC1B;AAzBD,gDAyBC;AAED,SAAsB,2BAA2B,CAC/C,IAEC,EACD,aAAoC,EACpC,WAA2C,EAC3C,MAAgB,EAChB,IAIC;;;;;;oBAEO,UAAU,GAAK,IAAA,iBAAU,EAAC,IAAI,CAAC,WAArB,CAAqB;oBACjC,SAAS,GAAG,IAAA,wBAAe,EAAC,IAAI,CAAC,CAAA;oBACxB,qBAAM,UAAU,CAAC,IAAI,CAClC,SAAS,EACT,+BAA+B,aAE7B,aAAa,eAAA,EACb,GAAG,EAAE,WAAW,CAAC,GAAG,EACpB,SAAS,WAAA,EACT,OAAO,EAAE,MAAM,CAAC,aAAa,IAC1B,IAAI,EAEV,EAAA;;oBAVK,MAAM,GAAG,SAUd;oBACD,sBAAO,MAAkB,EAAA;;;;CAC1B;AA3BD,kEA2BC"}
+{"version":3,"file":"shared.js","sourceRoot":"","sources":["../src/shared.ts"],"names":[],"mappings":";;;AAEA,6CAA+C;AAC/C,sDAA2D;AAIpD,KAAK,UAAU,kBAAkB,CACtC,IAAkE,EAClE,WAA2C,EAC3C,MAAgB,EAChB,IAIC;IAED,MAAM,EAAE,UAAU,EAAE,GAAG,IAAA,iBAAU,EAAC,IAAI,CAAC,CAAA;IACvC,MAAM,EAAE,aAAa,EAAE,GAAG,IAAI,CAAA;IAC9B,MAAM,SAAS,GAAG,IAAA,wBAAe,EAAC,IAAI,CAAC,CAAA;IACvC,MAAM,MAAM,GAAG,MAAM,UAAU,CAAC,IAAI,CAClC,IAAA,wBAAe,EAAC,IAAI,CAAC,EACrB,4BAA4B,EAC5B;QACE,aAAa;QACb,GAAG,EAAE,WAAW,CAAC,GAAG;QACpB,SAAS;QACT,OAAO,EAAE,MAAM,CAAC,aAAa;QAC7B,GAAG,IAAI;KACR,CACF,CAAA;IACD,OAAO,MAAkB,CAAA;AAC3B,CAAC;AAzBD,gDAyBC;AAEM,KAAK,UAAU,2BAA2B,CAC/C,IAEC,EACD,aAAoC,EACpC,WAA2C,EAC3C,MAAgB,EAChB,IAIC;IAED,MAAM,EAAE,UAAU,EAAE,GAAG,IAAA,iBAAU,EAAC,IAAI,CAAC,CAAA;IACvC,MAAM,SAAS,GAAG,IAAA,wBAAe,EAAC,IAAI,CAAC,CAAA;IACvC,MAAM,MAAM,GAAG,MAAM,UAAU,CAAC,IAAI,CAClC,SAAS,EACT,+BAA+B,EAC/B;QACE,aAAa;QACb,GAAG,EAAE,WAAW,CAAC,GAAG;QACpB,SAAS;QACT,OAAO,EAAE,MAAM,CAAC,aAAa;QAC7B,GAAG,IAAI;KACR,CACF,CAAA;IACD,OAAO,MAAkB,CAAA;AAC3B,CAAC;AA3BD,kEA2BC"}

package/dist/util.js

@@ -1,58 +1,11 @@
 "use strict";
-var __assign = (this && this.__assign) || function () {
-    __assign = Object.assign || function(t) {
-        for (var s, i = 1, n = arguments.length; i < n; i++) {
-            s = arguments[i];
-            for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
-                t[p] = s[p];
-        }
-        return t;
-    };
-    return __assign.apply(this, arguments);
-};
-var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
-    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
-    return new (P || (P = Promise))(function (resolve, reject) {
-        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
-        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
-        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
-        step((generator = generator.apply(thisArg, _arguments || [])).next());
-    });
-};
-var __generator = (this && this.__generator) || function (thisArg, body) {
-    var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g;
-    return g = { next: verb(0), "throw": verb(1), "return": verb(2) }, typeof Symbol === "function" && (g[Symbol.iterator] = function() { return this; }), g;
-    function verb(n) { return function (v) { return step([n, v]); }; }
-    function step(op) {
-        if (f) throw new TypeError("Generator is already executing.");
-        while (_) try {
-            if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
-            if (y = 0, t) op = [op[0] & 2, t.value];
-            switch (op[0]) {
-                case 0: case 1: t = op; break;
-                case 4: _.label++; return { value: op[1], done: false };
-                case 5: _.label++; y = op[1]; op = [0]; continue;
-                case 7: op = _.ops.pop(); _.trys.pop(); continue;
-                default:
-                    if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
-                    if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
-                    if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
-                    if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
-                    if (t[2]) _.ops.pop();
-                    _.trys.pop(); continue;
-            }
-            op = body.call(thisArg, _);
-        } catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
-        if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
-    }
-};
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.shouldFetchReferenceSequence = exports.fetchSequence = exports.getColorWGBS = exports.orientationTypes = exports.getTagAlt = exports.getTag = void 0;
-var operators_1 = require("rxjs/operators");
+const operators_1 = require("rxjs/operators");
 // get tag from BAM or CRAM feature, where CRAM uses feature.get('tags') and
 // BAM does not
 function getTag(feature, tag) {
-    var tags = feature.get('tags');
+    const tags = feature.get('tags');
     return tags ? tags[tag] : feature.get(tag);
 }
 exports.getTag = getTag;
@@ -116,24 +69,18 @@ function getColorWGBS(strand, base) {
     return '#888';
 }
 exports.getColorWGBS = getColorWGBS;
-function fetchSequence(region, adapter) {
+async function fetchSequence(region, adapter) {
     var _a;
-    return __awaiter(this, void 0, void 0, function () {
-        var end, originalRefName, refName, feats;
-        return __generator(this, function (_b) {
-            switch (_b.label) {
-                case 0:
-                    end = region.end, originalRefName = region.originalRefName, refName = region.refName;
-                    return [4 /*yield*/, adapter
-                            .getFeatures(__assign(__assign({}, region), { refName: originalRefName || refName, end: end + 1 }))
-                            .pipe((0, operators_1.toArray)())
-                            .toPromise()];
-                case 1:
-                    feats = _b.sent();
-                    return [2 /*return*/, (_a = feats[0]) === null || _a === void 0 ? void 0 : _a.get('seq')];
-            }
-        });
-    });
+    const { end, originalRefName, refName } = region;
+    const feats = await adapter
+        .getFeatures({
+        ...region,
+        refName: originalRefName || refName,
+        end: end + 1,
+    })
+        .pipe((0, operators_1.toArray)())
+        .toPromise();
+    return (_a = feats[0]) === null || _a === void 0 ? void 0 : _a.get('seq');
 }
 exports.fetchSequence = fetchSequence;
 // has to check underlying C-G (aka CpG) on the reference sequence

package/dist/util.js.map

@@ -1 +1 @@
-{"version":3,"file":"util.js","sourceRoot":"","sources":["../src/util.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AACA,4CAAwC;AAGxC,4EAA4E;AAC5E,eAAe;AACf,SAAgB,MAAM,CAAC,OAAgB,EAAE,GAAW;IAClD,IAAM,IAAI,GAAG,OAAO,CAAC,GAAG,CAAC,MAAM,CAAC,CAAA;IAChC,OAAO,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,CAAA;AAC5C,CAAC;AAHD,wBAGC;AAED,4EAA4E;AAC5E,0CAA0C;AAC1C,SAAgB,SAAS,CAAC,OAAgB,EAAE,GAAW,EAAE,GAAW;IAClE,OAAO,MAAM,CAAC,OAAO,EAAE,GAAG,CAAC,IAAI,MAAM,CAAC,OAAO,EAAE,GAAG,CAAC,CAAA;AACrD,CAAC;AAFD,8BAEC;AAED,gDAAgD;AAChD,kFAAkF;AACrE,QAAA,gBAAgB,GAAG;IAC9B,EAAE,EAAE;QACF,IAAI,EAAE,IAAI;QACV,IAAI,EAAE,IAAI;QAEV,IAAI,EAAE,IAAI;QACV,IAAI,EAAE,IAAI;QAEV,IAAI,EAAE,IAAI;QACV,IAAI,EAAE,IAAI;QAEV,IAAI,EAAE,IAAI;QACV,IAAI,EAAE,IAAI;KACkB;IAE9B,EAAE,EAAE;QACF,IAAI,EAAE,IAAI;QACV,IAAI,EAAE,IAAI;QAEV,IAAI,EAAE,IAAI;QACV,IAAI,EAAE,IAAI;QAEV,IAAI,EAAE,IAAI;QACV,IAAI,EAAE,IAAI;QAEV,IAAI,EAAE,IAAI;QACV,IAAI,EAAE,IAAI;KACkB;IAE9B,EAAE,EAAE;QACF,IAAI,EAAE,IAAI;QACV,IAAI,EAAE,IAAI;QAEV,IAAI,EAAE,IAAI;QACV,IAAI,EAAE,IAAI;QAEV,IAAI,EAAE,IAAI;QACV,IAAI,EAAE,IAAI;QAEV,IAAI,EAAE,IAAI;QACV,IAAI,EAAE,IAAI;KACkB;CAC/B,CAAA;AAED,SAAgB,YAAY,CAAC,MAAc,EAAE,IAAY;IACvD,IAAI,MAAM,KAAK,CAAC,EAAE;QAChB,IAAI,IAAI,KAAK,GAAG,EAAE;YAChB,OAAO,MAAM,CAAA;SACd;QACD,IAAI,IAAI,KAAK,GAAG,EAAE;YAChB,OAAO,MAAM,CAAA;SACd;KACF;SAAM,IAAI,MAAM,KAAK,CAAC,CAAC,EAAE;QACxB,IAAI,IAAI,KAAK,GAAG,EAAE;YAChB,OAAO,MAAM,CAAA;SACd;QACD,IAAI,IAAI,KAAK,GAAG,EAAE;YAChB,OAAO,MAAM,CAAA;SACd;KACF;IACD,OAAO,MAAM,CAAA;AACf,CAAC;AAjBD,oCAiBC;AAED,SAAsB,aAAa,CACjC,MAAuB,EACvB,OAA+B;;;;;;;oBAEvB,GAAG,GAA+B,MAAM,IAArC,EAAE,eAAe,GAAc,MAAM,gBAApB,EAAE,OAAO,GAAK,MAAM,QAAX,CAAW;oBAElC,qBAAM,OAAO;6BACxB,WAAW,uBACP,MAAM,KACT,OAAO,EAAE,eAAe,IAAI,OAAO,EACnC,GAAG,EAAE,GAAG,GAAG,CAAC,IACZ;6BACD,IAAI,CAAC,IAAA,mBAAO,GAAE,CAAC;6BACf,SAAS,EAAE,EAAA;;oBAPR,KAAK,GAAG,SAOA;oBACd,sBAAO,MAAA,KAAK,CAAC,CAAC,CAAC,0CAAE,GAAG,CAAC,KAAK,CAAC,EAAA;;;;CAC5B;AAfD,sCAeC;AAED,kEAAkE;AAClE,SAAgB,4BAA4B,CAAC,IAAa;IACxD,OAAO,IAAI,KAAK,aAAa,CAAA;AAC/B,CAAC;AAFD,oEAEC"}
+{"version":3,"file":"util.js","sourceRoot":"","sources":["../src/util.ts"],"names":[],"mappings":";;;AACA,8CAAwC;AAGxC,4EAA4E;AAC5E,eAAe;AACf,SAAgB,MAAM,CAAC,OAAgB,EAAE,GAAW;IAClD,MAAM,IAAI,GAAG,OAAO,CAAC,GAAG,CAAC,MAAM,CAAC,CAAA;IAChC,OAAO,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,CAAA;AAC5C,CAAC;AAHD,wBAGC;AAED,4EAA4E;AAC5E,0CAA0C;AAC1C,SAAgB,SAAS,CAAC,OAAgB,EAAE,GAAW,EAAE,GAAW;IAClE,OAAO,MAAM,CAAC,OAAO,EAAE,GAAG,CAAC,IAAI,MAAM,CAAC,OAAO,EAAE,GAAG,CAAC,CAAA;AACrD,CAAC;AAFD,8BAEC;AAED,gDAAgD;AAChD,kFAAkF;AACrE,QAAA,gBAAgB,GAAG;IAC9B,EAAE,EAAE;QACF,IAAI,EAAE,IAAI;QACV,IAAI,EAAE,IAAI;QAEV,IAAI,EAAE,IAAI;QACV,IAAI,EAAE,IAAI;QAEV,IAAI,EAAE,IAAI;QACV,IAAI,EAAE,IAAI;QAEV,IAAI,EAAE,IAAI;QACV,IAAI,EAAE,IAAI;KACkB;IAE9B,EAAE,EAAE;QACF,IAAI,EAAE,IAAI;QACV,IAAI,EAAE,IAAI;QAEV,IAAI,EAAE,IAAI;QACV,IAAI,EAAE,IAAI;QAEV,IAAI,EAAE,IAAI;QACV,IAAI,EAAE,IAAI;QAEV,IAAI,EAAE,IAAI;QACV,IAAI,EAAE,IAAI;KACkB;IAE9B,EAAE,EAAE;QACF,IAAI,EAAE,IAAI;QACV,IAAI,EAAE,IAAI;QAEV,IAAI,EAAE,IAAI;QACV,IAAI,EAAE,IAAI;QAEV,IAAI,EAAE,IAAI;QACV,IAAI,EAAE,IAAI;QAEV,IAAI,EAAE,IAAI;QACV,IAAI,EAAE,IAAI;KACkB;CAC/B,CAAA;AAED,SAAgB,YAAY,CAAC,MAAc,EAAE,IAAY;IACvD,IAAI,MAAM,KAAK,CAAC,EAAE;QAChB,IAAI,IAAI,KAAK,GAAG,EAAE;YAChB,OAAO,MAAM,CAAA;SACd;QACD,IAAI,IAAI,KAAK,GAAG,EAAE;YAChB,OAAO,MAAM,CAAA;SACd;KACF;SAAM,IAAI,MAAM,KAAK,CAAC,CAAC,EAAE;QACxB,IAAI,IAAI,KAAK,GAAG,EAAE;YAChB,OAAO,MAAM,CAAA;SACd;QACD,IAAI,IAAI,KAAK,GAAG,EAAE;YAChB,OAAO,MAAM,CAAA;SACd;KACF;IACD,OAAO,MAAM,CAAA;AACf,CAAC;AAjBD,oCAiBC;AAEM,KAAK,UAAU,aAAa,CACjC,MAAuB,EACvB,OAA+B;;IAE/B,MAAM,EAAE,GAAG,EAAE,eAAe,EAAE,OAAO,EAAE,GAAG,MAAM,CAAA;IAEhD,MAAM,KAAK,GAAG,MAAM,OAAO;SACxB,WAAW,CAAC;QACX,GAAG,MAAM;QACT,OAAO,EAAE,eAAe,IAAI,OAAO;QACnC,GAAG,EAAE,GAAG,GAAG,CAAC;KACb,CAAC;SACD,IAAI,CAAC,IAAA,mBAAO,GAAE,CAAC;SACf,SAAS,EAAE,CAAA;IACd,OAAO,MAAA,KAAK,CAAC,CAAC,CAAC,0CAAE,GAAG,CAAC,KAAK,CAAC,CAAA;AAC7B,CAAC;AAfD,sCAeC;AAED,kEAAkE;AAClE,SAAgB,4BAA4B,CAAC,IAAa;IACxD,OAAO,IAAI,KAAK,aAAa,CAAA;AAC/B,CAAC;AAFD,oEAEC"}

package/esm/LinearPileupDisplay/model.d.ts

@@ -149,7 +149,7 @@ declare const stateModelFactory: (configSchema: LinearPileupDisplayConfigModel)
     estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
     estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
 } & {
-    readonly blockType: "staticBlocks" | "dynamicBlocks";
+    readonly blockType: "dynamicBlocks" | "staticBlocks";
     readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
 } & {
     readonly renderDelay: number;
@@ -320,9 +320,9 @@ declare const stateModelFactory: (configSchema: LinearPileupDisplayConfigModel)
         subMenu?: undefined;
     })[];
 }, import("mobx-state-tree")._NotCustomized, {
+    type: string;
     height: number;
     id: string;
-    type: string;
     rpcDriverName: string | undefined;
     userBpPerPxLimit: number | undefined;
     userByteSizeLimit: number | undefined;

package/esm/LinearSNPCoverageDisplay/models/model.d.ts

@@ -153,7 +153,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
     estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
     estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
 } & {
-    readonly blockType: "staticBlocks" | "dynamicBlocks";
+    readonly blockType: "dynamicBlocks" | "staticBlocks";
     readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
 } & {
     readonly renderDelay: number;

package/esm/PileupRenderer/PileupRenderer.js

@@ -21,7 +21,6 @@ function fillRect(ctx, l, t, w, h, cw, color) {
     }
 }
 function getColorBaseMap(theme) {
-    // @ts-ignore
     const { bases } = theme.palette;
     return {
         A: bases.A.main,
@@ -636,7 +635,6 @@ export default class PileupRenderer extends BoxRendererType {
         const mismatches = feature.get('mismatches');
         const seq = feature.get('seq');
         const { charWidth, charHeight } = this.getCharWidthHeight(ctx);
-        // @ts-ignore
         const { bases } = theme.palette;
         const colorForBase = {
             A: bases.A.main,