@jbrowse/plugin-alignments 1.7.11 → 2.1.0

package/dist/BamAdapter/BamAdapter.d.ts

@@ -2,6 +2,10 @@ import { BamFile } from '@gmod/bam';
 import { BaseFeatureDataAdapter, BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
 import { Region } from '@jbrowse/core/util/types';
 import { Feature } from '@jbrowse/core/util/simpleFeature';
+interface Header {
+    idToName: string[];
+    nameToId: Record<string, number>;
+}
 export default class BamAdapter extends BaseFeatureDataAdapter {
     private samHeader?;
     private setupP?;
@@ -15,7 +19,7 @@ export default class BamAdapter extends BaseFeatureDataAdapter {
     }>;
     getHeader(opts?: BaseOptions): Promise<any>;
     private setupPre;
-    private setup;
+    setup(opts?: BaseOptions): Promise<Header>;
     getRefNames(opts?: BaseOptions): Promise<string[]>;
     private seqFetch;
     getFeatures(region: Region & {
@@ -38,3 +42,4 @@ export default class BamAdapter extends BaseFeatureDataAdapter {
     freeResources(): void;
     refIdToName(refId: number): string | undefined;
 }
+export {};