@jbrowse/plugin-alignments 1.6.9 → 1.7.3

package/dist/SNPCoverageAdapter/SNPCoverageAdapter.d.ts

@@ -1,71 +1,67 @@
-import { BaseFeatureDataAdapter, BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
-import { AugmentedRegion as Region } from '@jbrowse/core/util/types';
-import { Feature } from '@jbrowse/core/util/simpleFeature';
-import SerializableFilterChain from '@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain';
-interface SNPCoverageOptions extends BaseOptions {
-    filters?: SerializableFilterChain;
-}
-export default class SNPCoverageAdapter extends BaseFeatureDataAdapter {
-    protected configure(): Promise<{
-        subadapter: BaseFeatureDataAdapter;
-        sequenceAdapter: BaseFeatureDataAdapter | undefined;
-    }>;
-    fetchSequence(region: Region): Promise<any>;
-    getFeatures(region: Region, opts?: SNPCoverageOptions): import("rxjs").Observable<Feature>;
-    estimateRegionsStats(regions: Region[], opts?: BaseOptions): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
-    getRefNames(opts?: BaseOptions): Promise<string[]>;
-    freeResources(): void;
-    generateCoverageBins(features: Feature[], region: Region, opts: {
-        bpPerPx?: number;
-        colorBy?: {
-            type: string;
-            tag?: string;
-        };
-    }): Promise<{
-        bins: {
-            total: number;
-            lowqual: {
-                total: number;
-                strands: {
-                    [key: string]: number;
-                };
-            };
-            cov: {
-                total: number;
-                strands: {
-                    [key: string]: number;
-                };
-            };
-            delskips: {
-                total: number;
-                strands: {
-                    [key: string]: number;
-                };
-            };
-            noncov: {
-                total: number;
-                strands: {
-                    [key: string]: number;
-                };
-            };
-            ref: {
-                total: number;
-                strands: {
-                    [key: string]: number;
-                };
-            };
-        }[];
-        skipmap: {
-            [key: string]: {
-                score: number;
-                feature: unknown;
-                start: number;
-                end: number;
-                strand: number;
-                xs: string;
-            };
-        };
-    }>;
-}
-declare const capabilities: string[];
-export { capabilities };
+import { BaseFeatureDataAdapter, BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
+import { AugmentedRegion as Region } from '@jbrowse/core/util/types';
+import { Feature } from '@jbrowse/core/util/simpleFeature';
+export default class SNPCoverageAdapter extends BaseFeatureDataAdapter {
+    protected configure(): Promise<{
+        subadapter: BaseFeatureDataAdapter;
+        sequenceAdapter: BaseFeatureDataAdapter | undefined;
+    }>;
+    fetchSequence(region: Region): Promise<any>;
+    getFeatures(region: Region, opts?: BaseOptions): import("rxjs").Observable<Feature>;
+    estimateRegionsStats(regions: Region[], opts?: BaseOptions): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
+    getRefNames(opts?: BaseOptions): Promise<string[]>;
+    freeResources(): void;
+    generateCoverageBins(features: Feature[], region: Region, opts: {
+        bpPerPx?: number;
+        colorBy?: {
+            type: string;
+            tag?: string;
+        };
+    }): Promise<{
+        bins: {
+            total: number;
+            lowqual: {
+                total: number;
+                strands: {
+                    [key: string]: number;
+                };
+            };
+            cov: {
+                total: number;
+                strands: {
+                    [key: string]: number;
+                };
+            };
+            delskips: {
+                total: number;
+                strands: {
+                    [key: string]: number;
+                };
+            };
+            noncov: {
+                total: number;
+                strands: {
+                    [key: string]: number;
+                };
+            };
+            ref: {
+                total: number;
+                strands: {
+                    [key: string]: number;
+                };
+            };
+        }[];
+        skipmap: {
+            [key: string]: {
+                score: number;
+                feature: unknown;
+                start: number;
+                end: number;
+                strand: number;
+                xs: string;
+            };
+        };
+    }>;
+}
+declare const capabilities: string[];
+export { capabilities };