@jbrowse/plugin-alignments 1.6.4 → 1.6.7

package/dist/AlignmentsFeatureDetail/index.d.ts

@@ -1,5 +1,5 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").AnyConfigurationSchemaType;
+declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
 export declare function stateModelFactory(pluginManager: PluginManager): import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
     type: import("mobx-state-tree").ISimpleType<"AlignmentsFeatureWidget">;

package/dist/BamAdapter/BamSlightlyLazyFeature.d.ts

@@ -7,6 +7,7 @@ export default class BamSlightlyLazyFeature implements Feature {
     private record;
     private adapter;
     private ref?;
+    private cachedMD;
     constructor(record: BamRecord, adapter: BamAdapter, ref?: string | undefined);
     _get_name(): any;
     _get_type(): string;
@@ -14,12 +15,12 @@ export default class BamSlightlyLazyFeature implements Feature {
     _get_flags(): string;
     _get_strand(): number;
     _get_pair_orientation(): string | null | undefined;
-    _get_next_seq_id(): any;
+    _get_next_seq_id(): number;
     _get_seq_id(): number;
     _get_next_refName(): string | undefined;
     _get_next_segment_position(): string | undefined;
     _get_seq(): string;
-    _get_MD(): string | undefined;
+    _get_MD(): any;
     qualRaw(): Buffer | undefined;
     set(): void;
     tags(): string[];

package/dist/BamAdapter/configSchema.d.ts

@@ -1,2 +1,2 @@
-declare const _default: import("@jbrowse/core/configuration/configurationSchema").AnyConfigurationSchemaType;
+declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
 export default _default;

package/dist/CramAdapter/configSchema.d.ts

@@ -1,3 +1,3 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-declare const _default: (pluginManager: PluginManager) => import("@jbrowse/core/configuration/configurationSchema").AnyConfigurationSchemaType;
+declare const _default: (pluginManager: PluginManager) => import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
 export default _default;

package/dist/HtsgetBamAdapter/configSchema.d.ts

@@ -1,2 +1,2 @@
-declare const _default: import("@jbrowse/core/configuration/configurationSchema").AnyConfigurationSchemaType;
+declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
 export default _default;

package/dist/LinearAlignmentsDisplay/models/configSchema.d.ts

@@ -1,4 +1,4 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-declare const configModelFactory: (pluginManager: PluginManager) => import("@jbrowse/core/configuration/configurationSchema").AnyConfigurationSchemaType;
+declare const configModelFactory: (pluginManager: PluginManager) => import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
 export declare type AlignmentsConfigModel = ReturnType<typeof configModelFactory>;
 export default configModelFactory;

package/dist/LinearAlignmentsDisplay/models/model.d.ts

@@ -1,5 +1,5 @@
 import React from 'react';
-import { AnyConfigurationModel } from '@jbrowse/core/configuration/configurationSchema';
+import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 import PluginManager from '@jbrowse/core/PluginManager';
 import { MenuItem } from '@jbrowse/core/ui';
 import { Instance } from 'mobx-state-tree';

package/dist/LinearPileupDisplay/configSchema.d.ts

@@ -1,6 +1,6 @@
 import { Instance } from 'mobx-state-tree';
 import PluginManager from '@jbrowse/core/PluginManager';
-declare function PileupConfigFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").AnyConfigurationSchemaType;
+declare function PileupConfigFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
 export declare type LinearPileupDisplayConfigModel = ReturnType<typeof PileupConfigFactory>;
 export declare type LinearPileupDisplayConfig = Instance<LinearPileupDisplayConfigModel>;
 export default PileupConfigFactory;

package/dist/LinearSNPCoverageDisplay/components/Tooltip.d.ts

@@ -5,6 +5,6 @@ declare const SNPCoverageTooltip: (props: {
     height: number;
     offsetMouseCoord: Coord;
     clientMouseCoord: Coord;
-    clientRect?: ClientRect;
+    clientRect?: DOMRect;
 }) => JSX.Element | null;
 export default SNPCoverageTooltip;

package/dist/LinearSNPCoverageDisplay/models/configSchema.d.ts

@@ -1,2 +1,2 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-export default function SNPCoverageConfigFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").AnyConfigurationSchemaType;
+export default function SNPCoverageConfigFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration").AnyConfigurationSchemaType;

package/dist/PileupRenderer/configSchema.d.ts

@@ -1,2 +1,2 @@
-declare const _default: import("@jbrowse/core/configuration/configurationSchema").AnyConfigurationSchemaType;
+declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
 export default _default;

package/dist/SNPCoverageAdapter/configSchema.d.ts

@@ -1,3 +1,3 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-declare const _default: (pluginManager: PluginManager) => import("@jbrowse/core/configuration/configurationSchema").AnyConfigurationSchemaType;
+declare const _default: (pluginManager: PluginManager) => import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
 export default _default;

package/dist/SNPCoverageRenderer/SNPCoverageRenderer.d.ts

@@ -13,7 +13,7 @@ export interface RenderArgsDeserializedWithFeatures extends RenderArgsDeserializ
         values: number[];
     };
     displayCrossHatches: boolean;
-    modificationTagMap: Record<string, string>;
+    modificationTagMap?: Record<string, string>;
 }
 export default class SNPCoverageRenderer extends WiggleBaseRenderer {
     draw(ctx: CanvasRenderingContext2D, props: RenderArgsDeserializedWithFeatures): void;

package/dist/SNPCoverageRenderer/configSchema.d.ts

@@ -1,2 +1,2 @@
-declare var _default: import("@jbrowse/core/configuration/configurationSchema").AnyConfigurationSchemaType;
+declare var _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
 export default _default;

package/dist/SNPCoverageRenderer/index.d.ts

@@ -1,3 +1,3 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-export declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").AnyConfigurationSchemaType;
+export declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
 export default function register(pluginManager: PluginManager): void;