@jbrowse/plugin-alignments 1.5.0 → 1.5.4

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Files changed (58) hide show
  1. package/dist/AlignmentsFeatureDetail/index.d.ts +7 -4
  2. package/dist/AlignmentsTrack/index.d.ts +2 -0
  3. package/dist/BamAdapter/BamSlightlyLazyFeature.d.ts +1 -1
  4. package/dist/BamAdapter/index.d.ts +2 -4
  5. package/dist/CramAdapter/index.d.ts +1 -4
  6. package/dist/HtsgetBamAdapter/HtsgetBamAdapter.d.ts +2 -1
  7. package/dist/HtsgetBamAdapter/index.d.ts +2 -4
  8. package/dist/LinearAlignmentsDisplay/index.d.ts +2 -3
  9. package/dist/LinearPileupDisplay/index.d.ts +2 -2
  10. package/dist/LinearPileupDisplay/model.d.ts +1 -2
  11. package/dist/LinearSNPCoverageDisplay/components/Tooltip.d.ts +1 -1
  12. package/dist/LinearSNPCoverageDisplay/index.d.ts +2 -2
  13. package/dist/LinearSNPCoverageDisplay/models/model.d.ts +1 -0
  14. package/dist/PileupRenderer/PileupRenderer.d.ts +20 -7
  15. package/dist/PileupRenderer/index.d.ts +2 -3
  16. package/dist/SNPCoverageAdapter/SNPCoverageAdapter.d.ts +38 -26
  17. package/dist/SNPCoverageAdapter/index.d.ts +1 -5
  18. package/dist/SNPCoverageRenderer/index.d.ts +3 -3
  19. package/dist/plugin-alignments.cjs.development.js +3696 -3526
  20. package/dist/plugin-alignments.cjs.development.js.map +1 -1
  21. package/dist/plugin-alignments.cjs.production.min.js +1 -1
  22. package/dist/plugin-alignments.cjs.production.min.js.map +1 -1
  23. package/dist/plugin-alignments.esm.js +3690 -3520
  24. package/dist/plugin-alignments.esm.js.map +1 -1
  25. package/package.json +4 -4
  26. package/src/AlignmentsFeatureDetail/__snapshots__/index.test.js.snap +8 -0
  27. package/src/AlignmentsFeatureDetail/{index.js → index.ts} +19 -3
  28. package/src/AlignmentsTrack/index.ts +36 -0
  29. package/src/BamAdapter/BamSlightlyLazyFeature.ts +14 -30
  30. package/src/BamAdapter/MismatchParser.test.ts +20 -0
  31. package/src/BamAdapter/MismatchParser.ts +6 -5
  32. package/src/BamAdapter/index.ts +11 -5
  33. package/src/CramAdapter/CramSlightlyLazyFeature.ts +1 -5
  34. package/src/CramAdapter/index.ts +11 -4
  35. package/src/HtsgetBamAdapter/HtsgetBamAdapter.ts +2 -2
  36. package/src/HtsgetBamAdapter/index.ts +18 -5
  37. package/src/LinearAlignmentsDisplay/index.ts +20 -3
  38. package/src/LinearAlignmentsDisplay/models/configSchema.test.js +8 -68
  39. package/src/LinearPileupDisplay/configSchema.test.js +2 -13
  40. package/src/LinearPileupDisplay/index.ts +19 -2
  41. package/src/LinearPileupDisplay/model.ts +15 -20
  42. package/src/LinearSNPCoverageDisplay/components/Tooltip.tsx +17 -12
  43. package/src/LinearSNPCoverageDisplay/index.ts +19 -2
  44. package/src/LinearSNPCoverageDisplay/models/configSchema.test.js +2 -13
  45. package/src/LinearSNPCoverageDisplay/models/model.ts +21 -0
  46. package/src/PileupRenderer/PileupRenderer.tsx +154 -128
  47. package/src/PileupRenderer/components/PileupRendering.tsx +2 -0
  48. package/src/PileupRenderer/configSchema.ts +2 -2
  49. package/src/PileupRenderer/index.ts +16 -3
  50. package/src/SNPCoverageAdapter/SNPCoverageAdapter.ts +95 -25
  51. package/src/SNPCoverageAdapter/index.ts +17 -5
  52. package/src/SNPCoverageRenderer/SNPCoverageRenderer.ts +60 -13
  53. package/src/SNPCoverageRenderer/configSchema.js +5 -0
  54. package/src/SNPCoverageRenderer/index.ts +24 -0
  55. package/src/index.ts +91 -163
  56. package/src/SNPCoverageAdapter/SNPCoverageAdapter.test.ts +0 -275
  57. package/src/SNPCoverageAdapter/__snapshots__/SNPCoverageAdapter.test.ts.snap +0 -579
  58. package/src/SNPCoverageRenderer/index.js +0 -11

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