@jbrowse/jexl 3.3.0 → 4.0.1

package/esm/evaluator/compile.d.ts

@@ -1,11 +1,13 @@
 import type { Grammar } from '../grammar.ts';
 import type { AstNode, JexlValue } from '../types.ts';
-import type Evaluator from './Evaluator.ts';
+/** The variables an expression is evaluated against. */
+export type Context = Record<string, JexlValue>;
 /**
- * An AST node lowered to a closure. Calling it with an Evaluator (which carries
- * the context and grammar) produces the node's value.
+ * An AST node lowered to a closure. Calling it with a context produces the
+ * node's value. The grammar is captured when the closure is built, so it is not
+ * a parameter.
  */
-export type CompiledNode = (ev: Evaluator) => JexlValue;
+export type CompiledNode = (context: Context) => JexlValue;
 /**
  * Lowers an expression tree into a tree of closures, resolving each node's type
  * and its operator's implementation once, at compile time, rather than

package/esm/evaluator/compile.js

@@ -20,6 +20,30 @@ function defineOwn(target, key, value) {
 function assignOwn(target, key, value) {
     target[key] = value;
 }
+/**
+ * The key a bracket index that is neither a string nor a number reads under:
+ * its string form, when it has one worth using.
+ *
+ * A boolean and an array of primitives do — `['a']` is the key `'a'`, exactly
+ * as JS would index by it. A plain object does not, since '[object Object]' is
+ * not a key anything is stored under, so it and an array holding one answer
+ * `undefined` instead; indexing by either reached that lookup and missed
+ * anyway. null and undefined are the same case.
+ */
+function indexKey(value) {
+    if (typeof value === 'boolean') {
+        return String(value);
+    }
+    return Array.isArray(value) && value.every(isKeyPart)
+        ? value.join(',')
+        : undefined;
+}
+function isKeyPart(value) {
+    return (value == null ||
+        typeof value === 'string' ||
+        typeof value === 'number' ||
+        typeof value === 'boolean');
+}
 /** Renders an interpolated value for a template literal. */
 function stringify(value) {
     if (value == null) {
@@ -63,21 +87,17 @@ export function compileAst(ast, grammar) {
         case 'Identifier': {
             const name = node.value;
             if (!node.from) {
-                return node.relative
-                    ? (ev) => ev._relContext[name]
-                    : (ev) => ev._context[name];
+                return (ctx) => ctx[name];
             }
             const from = compileAst(node.from, grammar);
-            return (ev) => {
-                const context = from(ev);
-                if (context == null) {
+            return (ctx) => {
+                const subject = from(ctx);
+                if (subject == null) {
                     return undefined;
                 }
                 // an identifier chained off an array reads through its first element
-                const ctx = Array.isArray(context) ? context[0] : context;
-                return ctx == null
-                    ? undefined
-                    : ctx[name];
+                const target = Array.isArray(subject) ? subject[0] : subject;
+                return target == null ? undefined : target[name];
             };
         }
         case 'BinaryExpression': {
@@ -93,17 +113,17 @@ export function compileAst(ast, grammar) {
             if (evalOnDemand) {
                 // operands stay unevaluated behind an `eval` thunk, so operators such
                 // as && and || can short-circuit
-                return (ev) => evalOnDemand({ eval: () => left(ev) }, { eval: () => right(ev) });
+                return (ctx) => evalOnDemand({ eval: () => left(ctx) }, { eval: () => right(ctx) });
             }
             const fn = op.eval;
             if (!fn) {
-                return (ev) => {
-                    left(ev);
-                    right(ev);
+                return (ctx) => {
+                    left(ctx);
+                    right(ctx);
                     return undefined;
                 };
             }
-            return (ev) => fn(left(ev), right(ev));
+            return (ctx) => fn(left(ctx), right(ctx));
         }
         case 'UnaryExpression': {
             const right = compileAst(node.right, grammar);
@@ -115,12 +135,12 @@ export function compileAst(ast, grammar) {
                     : undefined;
             if (!fn) {
                 // the operand is still evaluated for an unknown operator, as before
-                return (ev) => {
-                    right(ev);
+                return (ctx) => {
+                    right(ctx);
                     return undefined;
                 };
             }
-            return (ev) => fn(right(ev));
+            return (ctx) => fn(right(ctx));
         }
         case 'ConditionalExpression': {
             const test = compileAst(node.test, grammar);
@@ -130,42 +150,58 @@ export function compileAst(ast, grammar) {
             const alternate = node.alternate
                 ? compileAst(node.alternate, grammar)
                 : undefined;
-            return (ev) => {
-                const res = test(ev);
+            return (ctx) => {
+                const res = test(ctx);
                 if (res) {
                     // an omitted consequent ("a ?: b") yields the test result
-                    return consequent ? consequent(ev) : res;
+                    return consequent ? consequent(ctx) : res;
                 }
-                return alternate ? alternate(ev) : undefined;
+                return alternate ? alternate(ctx) : undefined;
             };
         }
         case 'FilterExpression': {
-            if (node.relative) {
-                // thrown on evaluation rather than compilation, as before
-                return () => {
-                    throw new Error('Relative filter expressions are not supported');
-                };
-            }
             const subject = compileAst(node.subject, grammar);
             const index = compileAst(node.expr, grammar);
-            return (ev) => {
-                const subjectVal = subject(ev);
-                const indexVal = index(ev);
+            return (ctx) => {
+                const subjectVal = subject(ctx);
+                const indexVal = index(ctx);
                 if (subjectVal == null) {
                     return undefined;
                 }
-                return typeof indexVal === 'string' || typeof indexVal === 'number'
-                    ? subjectVal[indexVal]
-                    : undefined;
+                if (typeof indexVal === 'string' || typeof indexVal === 'number') {
+                    return subjectVal[indexVal];
+                }
+                // A value with a meaningful string form is indexed by it, which is what
+                // JS does and what this did until the evaluator was lowered to closures
+                // — the tree-walking version was a bare `subject?.[index]`. Answering
+                // `undefined` for everything else reads as a deliberate strictness and
+                // is not: nothing wanted it, and the shape it rejects is common.
+                //
+                // That shape is a one-element array. Every `@gmod/vcf` INFO value is a
+                // list — `Number=1` included, so `CLNSIG=Pathogenic` parses to
+                // `['Pathogenic']` — and the natural way to colour by one is a lookup
+                // table indexed by it. The miss is silent, because such an expression
+                // always carries a `|| fallback` for the values it has no entry for,
+                // and that fallback then answers for every record.
+                //
+                // A multi-valued list still misses — `['a','b']` is the key 'a,b' —
+                // which is the honest answer rather than a lucky one: reading through
+                // to the first element would be the index guessing which value was
+                // meant. `Identifier` above does read through a one-element array, but
+                // it is navigating rather than selecting, so it has nothing to guess.
+                const key = indexKey(indexVal);
+                return key === undefined
+                    ? undefined
+                    : subjectVal[key];
             };
         }
         case 'ArrayLiteral': {
             const items = node.value.map((item) => compileAst(item, grammar));
             const len = items.length;
-            return (ev) => {
+            return (ctx) => {
                 const out = new Array(len);
                 for (let i = 0; i < len; i++) {
-                    out[i] = items[i](ev);
+                    out[i] = items[i](ctx);
                 }
                 return out;
             };
@@ -177,10 +213,10 @@ export function compileAst(ast, grammar) {
             const len = keys.length;
             // resolved once, here, so the common case keeps its plain store
             const store = keys.includes('__proto__') ? defineOwn : assignOwn;
-            return (ev) => {
+            return (ctx) => {
                 const out = {};
                 for (let i = 0; i < len; i++) {
-                    store(out, keys[i], values[i](ev));
+                    store(out, keys[i], values[i](ctx));
                 }
                 return out;
             };
@@ -193,12 +229,12 @@ export function compileAst(ast, grammar) {
                     return () => value;
                 }
                 const expr = compileAst(part.value, grammar);
-                return (ev) => stringify(expr(ev));
+                return (ctx) => stringify(expr(ctx));
             });
-            return (ev) => {
+            return (ctx) => {
                 let out = '';
                 for (const part of parts) {
-                    out += part(ev);
+                    out += part(ctx);
                 }
                 return out;
             };
@@ -210,8 +246,8 @@ export function compileAst(ast, grammar) {
             // and `constructor` aren't callable as Jexl functions. Resolved per call
             // rather than baked in, since functions are routinely registered after
             // an expression has been compiled.
-            const lookup = (ev) => {
-                const { functions } = ev._grammar;
+            const lookup = () => {
+                const { functions } = grammar;
                 if (!Object.hasOwn(functions, name)) {
                     throw new Error(`Jexl Function ${name} is not defined.`);
                 }
@@ -221,28 +257,28 @@ export function compileAst(ast, grammar) {
             // argument array and needs no spread
             switch (args.length) {
                 case 0: {
-                    return (ev) => lookup(ev)();
+                    return () => lookup()();
                 }
                 case 1: {
                     const [a0] = args;
-                    return (ev) => lookup(ev)(a0(ev));
+                    return (ctx) => lookup()(a0(ctx));
                 }
                 case 2: {
                     const [a0, a1] = args;
-                    return (ev) => lookup(ev)(a0(ev), a1(ev));
+                    return (ctx) => lookup()(a0(ctx), a1(ctx));
                 }
                 case 3: {
                     const [a0, a1, a2] = args;
-                    return (ev) => lookup(ev)(a0(ev), a1(ev), a2(ev));
+                    return (ctx) => lookup()(a0(ctx), a1(ctx), a2(ctx));
                 }
                 default: {
                     const len = args.length;
-                    return (ev) => {
+                    return (ctx) => {
                         const vals = new Array(len);
                         for (let i = 0; i < len; i++) {
-                            vals[i] = args[i](ev);
+                            vals[i] = args[i](ctx);
                         }
-                        return lookup(ev)(...vals);
+                        return lookup()(...vals);
                     };
                 }
             }
@@ -250,10 +286,10 @@ export function compileAst(ast, grammar) {
         case 'SequenceExpression': {
             const exprs = node.expressions.map((expr) => compileAst(expr, grammar));
             const len = exprs.length;
-            return (ev) => {
+            return (ctx) => {
                 let last;
                 for (let i = 0; i < len; i++) {
-                    last = exprs[i](ev);
+                    last = exprs[i](ctx);
                 }
                 return last;
             };
@@ -262,9 +298,9 @@ export function compileAst(ast, grammar) {
             const name = node.left.value;
             const right = compileAst(node.right, grammar);
             const store = name === '__proto__' ? defineOwn : assignOwn;
-            return (ev) => {
-                const value = right(ev);
-                store(ev._context, name, value);
+            return (ctx) => {
+                const value = right(ctx);
+                store(ctx, name, value);
                 return value;
             };
         }

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package/esm/grammar.js

@@ -150,7 +150,7 @@ export const getGrammar = () => ({
     },
     /**
      * A map of function names to javascript functions. A Jexl function
-     * takes zero ore more arguemnts:
+     * takes zero or more arguments:
      *
      *     - {*} ...args: A variable number of arguments passed to this function.
      *       All of these are pre-evaluated to their actual values before calling

package/esm/parser/Parser.d.ts

@@ -4,7 +4,7 @@ import type { AstNode, Token } from '../types.ts';
 /**
  * The Parser is a state machine that converts tokens from the {@link Lexer}
  * into an Abstract Syntax Tree (AST), capable of being evaluated in any
- * context by the {@link Evaluator}.  The Parser expects that all tokens
+ * context by {@link compileAst}.  The Parser expects that all tokens
  * provided to it are legal and typed properly according to the grammar, but
  * accepts that the tokens may still be in an invalid order or in some other
  * unparsable configuration that requires it to throw an Error.
@@ -24,13 +24,11 @@ declare class Parser {
     _state: string;
     _tree: AstNode | null;
     _exprStr: string;
-    _relative: boolean;
     _stopMap: Record<string, string>;
     _cursor?: AstNode | null;
     _subParser?: Parser;
     _parentStop?: boolean;
     _nextIdentEncapsulate?: boolean;
-    _nextIdentRelative?: boolean;
     _curObjKey?: string;
     _sequenceExpressions?: AstNode[];
     constructor(grammar: Grammar, lexer: Lexer, prefix?: string, stopMap?: Record<string, string>);
@@ -55,17 +53,12 @@ declare class Parser {
     /**
      * Marks this Parser instance as completed and retrieves the full AST.
      * @returns {{}|null} a full expression tree, ready for evaluation by the
-     *      {@link Evaluator#eval} function, or null if no tokens were passed to
+     *      {@link compileAst} function, or null if no tokens were passed to
      *      the parser before complete was called
      * @throws {Error} if the parser is not in a state where it's legal to end
      *      the expression, indicating that the expression is incomplete
      */
     complete(): AstNode | null;
-    /**
-     * Indicates whether the expression tree contains a relative path identifier.
-     * @returns {boolean} true if a relative identifier exists false otherwise.
-     */
-    isRelative(): boolean;
     /**
      * Ends a subexpression by completing the subParser and passing its result
      * to the subHandler configured in the current state.

package/esm/parser/Parser.js

@@ -22,7 +22,7 @@ const tokenHandlers = {
 /**
  * The Parser is a state machine that converts tokens from the {@link Lexer}
  * into an Abstract Syntax Tree (AST), capable of being evaluated in any
- * context by the {@link Evaluator}.  The Parser expects that all tokens
+ * context by {@link compileAst}.  The Parser expects that all tokens
  * provided to it are legal and typed properly according to the grammar, but
  * accepts that the tokens may still be in an invalid order or in some other
  * unparsable configuration that requires it to throw an Error.
@@ -42,13 +42,11 @@ class Parser {
     _state;
     _tree;
     _exprStr;
-    _relative;
     _stopMap;
     _cursor;
     _subParser;
     _parentStop;
     _nextIdentEncapsulate;
-    _nextIdentRelative;
     _curObjKey;
     _sequenceExpressions;
     constructor(grammar, lexer, prefix, stopMap) {
@@ -57,7 +55,6 @@ class Parser {
         this._state = 'expectOperand';
         this._tree = null;
         this._exprStr = prefix || '';
-        this._relative = false;
         this._stopMap = stopMap || {};
     }
     /**
@@ -128,7 +125,7 @@ class Parser {
     /**
      * Marks this Parser instance as completed and retrieves the full AST.
      * @returns {{}|null} a full expression tree, ready for evaluation by the
-     *      {@link Evaluator#eval} function, or null if no tokens were passed to
+     *      {@link compileAst} function, or null if no tokens were passed to
      *      the parser before complete was called
      * @throws {Error} if the parser is not in a state where it's legal to end
      *      the expression, indicating that the expression is incomplete
@@ -159,13 +156,6 @@ class Parser {
         this._state = 'complete';
         return this._cursor ? this._tree : null;
     }
-    /**
-     * Indicates whether the expression tree contains a relative path identifier.
-     * @returns {boolean} true if a relative identifier exists false otherwise.
-     */
-    isRelative() {
-        return this._relative;
-    }
     /**
      * Ends a subexpression by completing the subParser and passing its result
      * to the subHandler configured in the current state.

package/esm/parser/Parser.js.map

@@ -1 +1 @@
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package/esm/parser/handlers.d.ts

@@ -95,9 +95,12 @@ export declare function ternaryEnd(this: Parser, ast: AstNode | null): void;
  */
 export declare function ternaryMid(this: Parser, ast: AstNode | null): void;
 /**
- * Handles the start of a new ternary expression by encapsulating the entire
- * AST in a ConditionalExpression node, and using the existing tree as the
- * test element.
+ * Handles the start of a new ternary expression by encapsulating the tree so
+ * far in a ConditionalExpression node, and using it as the test element.
+ *
+ * Every operator binds tighter than the conditional and so belongs in the test
+ * — except `=`, which binds looser. `x = a ? b : c` therefore assigns the
+ * conditional rather than testing the assignment, which had stored `a` in `x`.
  */
 export declare function ternaryStart(this: Parser): void;
 /**

package/esm/parser/handlers.js

@@ -45,7 +45,7 @@ export function arrayVal(ast) {
 export function binaryOp(token) {
     if (token.value === '=') {
         // `from` marks a member access such as `a.b`; only a bare name can be
-        // assigned to, since the Evaluator writes straight into the context
+        // assigned to, since the compiled closure writes straight into the context
         if (this._cursor?.type !== 'Identifier' ||
             this._cursor.from) {
             throw new Error('Left side of assignment must be a variable name');
@@ -67,7 +67,14 @@ export function binaryOp(token) {
         if (!parentExpr.operator) {
             break;
         }
-        if (precedenceOf(this._grammar.elements[parentExpr.operator]) < precedence) {
+        // a prefix operator binds tighter than any binary one, so `-x ^ 2` groups
+        // as `(-x) ^ 2` — the same way `-2 ^ 2` already does, since the Lexer folds
+        // that sign into the literal. Looking `-` up in the grammar finds its
+        // binary precedence instead, which is lower than `^`'s and gave `-(x ^ 2)`
+        const parentPrecedence = parent.type === 'UnaryExpression'
+            ? Infinity
+            : precedenceOf(this._grammar.elements[parentExpr.operator]);
+        if (parentPrecedence < precedence) {
             break;
         }
         this._cursor = parent;
@@ -89,17 +96,18 @@ export function binaryOp(token) {
  */
 export function dot() {
     const cursor = this._cursor;
-    // the dot continues an identifier chain unless the cursor is an operator
-    // still waiting on its right-hand side, in which case it opens a relative
-    // path instead — as in the leading dot of `list[.price > 5]`
-    this._nextIdentEncapsulate =
-        !!cursor &&
-            cursor.type !== 'UnaryExpression' &&
-            (cursor.type !== 'BinaryExpression' || !!cursor.right);
-    this._nextIdentRelative = !this._nextIdentEncapsulate;
-    if (this._nextIdentRelative) {
-        this._relative = true;
+    // a dot continues an identifier chain. With nothing to continue — no cursor,
+    // or an operator still waiting on its right-hand side — it would instead open
+    // a relative path, the leading dot of `list[.price > 5]`. This fork removed
+    // array filtering expressions, which are the only construct that gives a
+    // relative path a root to resolve against, so it is rejected here rather than
+    // parsed into a tree that can only fail once it is evaluated.
+    if (!cursor ||
+        cursor.type === 'UnaryExpression' ||
+        (cursor.type === 'BinaryExpression' && !cursor.right)) {
+        throw new Error(`Relative paths are not supported: ${this._exprStr}`);
     }
+    this._nextIdentEncapsulate = true;
 }
 /**
  * Handles a subexpression used for filtering an array returned by an
@@ -110,7 +118,6 @@ export function filter(ast) {
     const node = {
         type: 'FilterExpression',
         expr: ast,
-        relative: this._subParser.isRelative(),
         subject: this._cursor
     };
     this._placeBeforeCursor(node);
@@ -133,12 +140,11 @@ export function functionCall() {
         // there is nothing to look up in the function pool
         throw new Error(`Functions must be called by name: ${this._exprStr}`);
     }
-    const { from } = cursor;
+    const { from, value } = cursor;
     const node = {
         type: 'FunctionCall',
-        name: cursor.value,
-        args: from ? [from] : [],
-        pool: 'functions'
+        name: value,
+        args: from ? [from] : []
     };
     this._placeBeforeCursor(node);
 }
@@ -157,10 +163,6 @@ export function identifier(token) {
         this._nextIdentEncapsulate = false;
     }
     else {
-        if (this._nextIdentRelative) {
-            node.relative = true;
-            this._nextIdentRelative = false;
-        }
         this._placeAtCursor(node);
     }
 }
@@ -237,7 +239,7 @@ export function objStart() {
 export function objVal(ast) {
     // defined rather than assigned so that the key "__proto__" becomes an
     // ordinary entry of the node's key map instead of re-pointing its prototype,
-    // which dropped the entry before the Evaluator ever saw it
+    // which dropped the entry before it could be compiled
     Object.defineProperty(this._cursor.value, this._curObjKey, {
         value: ast,
         writable: true,
@@ -270,17 +272,32 @@ export function ternaryMid(ast) {
     this._cursor.consequent = ast ?? undefined;
 }
 /**
- * Handles the start of a new ternary expression by encapsulating the entire
- * AST in a ConditionalExpression node, and using the existing tree as the
- * test element.
+ * Handles the start of a new ternary expression by encapsulating the tree so
+ * far in a ConditionalExpression node, and using it as the test element.
+ *
+ * Every operator binds tighter than the conditional and so belongs in the test
+ * — except `=`, which binds looser. `x = a ? b : c` therefore assigns the
+ * conditional rather than testing the assignment, which had stored `a` in `x`.
  */
 export function ternaryStart() {
+    let assignment;
+    let test = this._tree;
+    while (test.type === 'AssignmentExpression' && test.right) {
+        assignment = test;
+        test = test.right;
+    }
     const node = {
         type: 'ConditionalExpression',
-        test: this._tree
+        test
     };
-    this._tree = node;
-    this._cursor = this._tree;
+    if (assignment) {
+        assignment.right = node;
+        this._setParent(node, assignment);
+    }
+    else {
+        this._tree = node;
+    }
+    this._cursor = node;
 }
 /**
  * Handles token of type 'unaryOp', indicating that the operation has only