@jbrowse/img 3.0.5 → 3.2.0

package/dist/parseArgv.js

@@ -21,13 +21,13 @@ function parseArgv(argv) {
 }
 function standardizeArgv(args, trackTypes) {
     const result = { trackList: [] };
-    args.forEach(arg => {
+    for (const arg of args) {
         if (trackTypes.includes(arg[0])) {
             result.trackList.push(arg);
         }
         else {
             result[arg[0]] = arg[1][0] || true;
         }
-    });
+    }
     return result;
 }

package/dist/renderRegion.js

@@ -8,7 +8,7 @@ exports.renderRegion = renderRegion;
 const fs_1 = __importDefault(require("fs"));
 const path_1 = __importDefault(require("path"));
 const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
-const react_linear_genome_view_1 = require("@jbrowse/react-linear-genome-view");
+const react_linear_genome_view2_1 = require("@jbrowse/react-linear-genome-view2");
 const util_1 = require("./util");
 function read(file) {
     let res;
@@ -36,7 +36,7 @@ function addRelativePaths(config, configPath) {
     }
 }
 function readData({ assembly: asm, config, session, fasta, aliases, cytobands, defaultSession, tracks, trackList = [], }) {
-    var _a;
+    var _a, _b;
     const assemblyData = asm && fs_1.default.existsSync(asm) ? read(asm) : undefined;
     const tracksData = tracks ? read(tracks) : undefined;
     const configData = config ? read(config) : {};
@@ -109,11 +109,10 @@ function readData({ assembly: asm, config, session, fasta, aliases, cytobands, d
     else if (!configData.tracks) {
         configData.tracks = [];
     }
-    trackList.forEach(track => {
-        var _a;
+    for (const track of trackList) {
         const [type, opts] = track;
         const [file, ...rest] = opts;
-        const index = (_a = rest.find(r => r.startsWith('index:'))) === null || _a === void 0 ? void 0 : _a.replace('index:', '');
+        const index = (_b = rest.find(r => r.startsWith('index:'))) === null || _b === void 0 ? void 0 : _b.replace('index:', '');
         if (!file) {
             throw new Error('no file specified');
         }
@@ -276,7 +275,7 @@ function readData({ assembly: asm, config, session, fasta, aliases, cytobands, d
                 },
             ];
         }
-    });
+    }
     if (!defaultSession) {
         configData.defaultSession = undefined;
     }
@@ -292,7 +291,7 @@ function process(trackEntry, view, extra = c => c) {
     }
     const currentTrack = view.showTrack(extra(track));
     const display = currentTrack.displays[0];
-    opts.forEach(opt => {
+    for (const opt of opts) {
         if (opt.startsWith('height:')) {
             const [, height] = opt.split(':');
             if (height) {
@@ -353,10 +352,10 @@ function process(trackEntry, view, extra = c => c) {
             }
             display.setResolution(+val);
         }
-    });
+    }
 }
 async function renderRegion(opts) {
-    const model = (0, react_linear_genome_view_1.createViewState)({
+    const model = (0, react_linear_genome_view2_1.createViewState)({
         ...readData(opts),
     });
     const { loc, width = 1500, trackList = [], session: sessionParam, defaultSession, } = opts;
@@ -376,9 +375,9 @@ async function renderRegion(opts) {
     else if (!sessionParam && !defaultSession) {
         console.warn('No loc specified');
     }
-    trackList.forEach(track => {
+    for (const track of trackList) {
         process(track, view, extra => path_1.default.basename(extra));
-    });
+    }
     return (0, plugin_linear_genome_view_1.renderToSvg)(view, {
         rasterizeLayers: !opts.noRasterize,
         ...opts,

package/esm/parseArgv.js

@@ -17,13 +17,13 @@ export function parseArgv(argv) {
 }
 export function standardizeArgv(args, trackTypes) {
     const result = { trackList: [] };
-    args.forEach(arg => {
+    for (const arg of args) {
         if (trackTypes.includes(arg[0])) {
             result.trackList.push(arg);
         }
         else {
             result[arg[0]] = arg[1][0] || true;
         }
-    });
+    }
     return result;
 }

package/esm/renderRegion.js

@@ -1,7 +1,7 @@
 import fs from 'fs';
 import path from 'path';
 import { renderToSvg } from '@jbrowse/plugin-linear-genome-view';
-import { createViewState } from '@jbrowse/react-linear-genome-view';
+import { createViewState } from '@jbrowse/react-linear-genome-view2';
 import { booleanize } from './util';
 function read(file) {
     let res;
@@ -29,7 +29,7 @@ function addRelativePaths(config, configPath) {
     }
 }
 export function readData({ assembly: asm, config, session, fasta, aliases, cytobands, defaultSession, tracks, trackList = [], }) {
-    var _a;
+    var _a, _b;
     const assemblyData = asm && fs.existsSync(asm) ? read(asm) : undefined;
     const tracksData = tracks ? read(tracks) : undefined;
     const configData = config ? read(config) : {};
@@ -102,11 +102,10 @@ export function readData({ assembly: asm, config, session, fasta, aliases, cytob
     else if (!configData.tracks) {
         configData.tracks = [];
     }
-    trackList.forEach(track => {
-        var _a;
+    for (const track of trackList) {
         const [type, opts] = track;
         const [file, ...rest] = opts;
-        const index = (_a = rest.find(r => r.startsWith('index:'))) === null || _a === void 0 ? void 0 : _a.replace('index:', '');
+        const index = (_b = rest.find(r => r.startsWith('index:'))) === null || _b === void 0 ? void 0 : _b.replace('index:', '');
         if (!file) {
             throw new Error('no file specified');
         }
@@ -269,7 +268,7 @@ export function readData({ assembly: asm, config, session, fasta, aliases, cytob
                 },
             ];
         }
-    });
+    }
     if (!defaultSession) {
         configData.defaultSession = undefined;
     }
@@ -285,7 +284,7 @@ function process(trackEntry, view, extra = c => c) {
     }
     const currentTrack = view.showTrack(extra(track));
     const display = currentTrack.displays[0];
-    opts.forEach(opt => {
+    for (const opt of opts) {
         if (opt.startsWith('height:')) {
             const [, height] = opt.split(':');
             if (height) {
@@ -346,7 +345,7 @@ function process(trackEntry, view, extra = c => c) {
             }
             display.setResolution(+val);
         }
-    });
+    }
 }
 export async function renderRegion(opts) {
     const model = createViewState({
@@ -369,9 +368,9 @@ export async function renderRegion(opts) {
     else if (!sessionParam && !defaultSession) {
         console.warn('No loc specified');
     }
-    trackList.forEach(track => {
+    for (const track of trackList) {
         process(track, view, extra => path.basename(extra));
-    });
+    }
     return renderToSvg(view, {
         rasterizeLayers: !opts.noRasterize,
         ...opts,

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/img",
-  "version": "3.0.5",
+  "version": "3.2.0",
   "main": "dist/index.js",
   "module": "esm/index.js",
   "author": "JBrowse Team",
@@ -27,8 +27,7 @@
     "@babel/runtime": "^7.17.9",
     "@emotion/cache": "^11.7.1",
     "@emotion/react": "^11.9.0",
-    "@jbrowse/plugin-linear-genome-view": "^3.0.5",
-    "@jbrowse/react-linear-genome-view": "^3.0.5",
+    "@jbrowse/react-linear-genome-view2": "^3.2.0",
     "canvas": "^3.0.0",
     "jsdom": "^26.0.0",
     "mobx": "^6.6.0",
@@ -41,5 +40,5 @@
   "publishConfig": {
     "access": "public"
   },
-  "gitHead": "a03749efe19e51609922272b845a331897346789"
+  "gitHead": "c750e3f56706a490c19ba75abd807fec5e38aebf"
 }