@jbrowse/img 2.2.0 → 2.2.1

package/dist/index.testmod.js

@@ -1,210 +1,169 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
-var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
-var _renderRegion = require("./renderRegion");
-var _fs = _interopRequireDefault(require("fs"));
-var _jsdom = require("jsdom");
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const renderRegion_1 = require("./renderRegion");
+const fs_1 = __importDefault(require("fs"));
+const jsdom_1 = require("jsdom");
 require("abortcontroller-polyfill/dist/abortcontroller-polyfill-only");
-var _canvas = require("canvas");
-var document = new _jsdom.JSDOM("...").window.document;
+const canvas_1 = require("canvas");
+const node_fetch_1 = __importStar(require("node-fetch"));
+global.fetch = node_fetch_1.default;
+global.Headers = node_fetch_1.Headers;
+global.Response = node_fetch_1.Response;
+global.Request = node_fetch_1.Request;
+const { document } = new jsdom_1.JSDOM(`...`).window;
 global.document = document;
-global.nodeImage = _canvas.Image;
-global.nodeCreateCanvas = _canvas.createCanvas;
-function hashCode(str) {
-  var hash = 0;
-  var chr;
-  if (str.length === 0) {
-    return hash;
-  }
-  for (var i = 0; i < str.length; i++) {
-    chr = str.charCodeAt(i);
-    hash = (hash << 5) - hash + chr;
-    hash |= 0; // Convert to 32bit integer
-  }
-
-  return hash;
-}
-var timeout = 20000;
-
-// commented out for using remote files currently
-xtest('renders a region with --session and --config args', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
-  var result;
-  return _regenerator.default.wrap(function _callee$(_context) {
-    while (1) {
-      switch (_context.prev = _context.next) {
-        case 0:
-          _context.next = 2;
-          return (0, _renderRegion.renderRegion)({
-            session: require.resolve('../test/clingen_session.json'),
-            config: require.resolve('../data/config.json')
-          });
-        case 2:
-          result = _context.sent;
-          _fs.default.writeFileSync('svg_from_config_and_session_param.svg', result);
-          expect(hashCode(result)).toMatchSnapshot();
-        case 5:
-        case "end":
-          return _context.stop();
-      }
-    }
-  }, _callee);
-})), timeout);
-
-// commented out for using remote files currently
-xtest('renders a region with --session, --tracks, and --assembly args', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
-  var result;
-  return _regenerator.default.wrap(function _callee2$(_context2) {
-    while (1) {
-      switch (_context2.prev = _context2.next) {
-        case 0:
-          _context2.next = 2;
-          return (0, _renderRegion.renderRegion)({
-            session: require.resolve('../test/clingen_session.json'),
-            tracks: require.resolve('../data/tracks.json'),
-            assembly: require.resolve('../data/assembly.json')
-          });
-        case 2:
-          result = _context2.sent;
-          _fs.default.writeFileSync('svg_from_separate_session_and_tracks.svg', result);
-          expect(hashCode(result)).toMatchSnapshot();
-        case 5:
-        case "end":
-          return _context2.stop();
-      }
-    }
-  }, _callee2);
-})), timeout);
-test('renders volvox with variety of args', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3() {
-  var fp, result;
-  return _regenerator.default.wrap(function _callee3$(_context3) {
-    while (1) {
-      switch (_context3.prev = _context3.next) {
-        case 0:
-          fp = function fp(f) {
-            return require.resolve('../data/volvox/' + f);
-          };
-          console.error = jest.fn();
-          _context3.next = 4;
-          return (0, _renderRegion.renderRegion)({
-            fasta: fp('volvox.fa'),
-            trackList: [['bam', [fp('volvox-sorted.bam')]], ['cram', [fp('volvox-sorted.cram')]], ['bigwig', [fp('volvox-sorted.bam.coverage.bw')]], ['vcfgz', [fp('volvox.filtered.vcf.gz')]], ['gffgz', [fp('volvox.sort.gff3.gz')]], ['bigbed', [fp('volvox.bb')]], ['bedgz', [fp('volvox-bed12.bed.gz')]]],
-            loc: 'ctgA:1000-2000'
-          });
-        case 4:
-          result = _context3.sent;
-          // can't do a snapshot test here, slightly inconsistent results(?)
-          _fs.default.writeFileSync(require.resolve('../test/svg_from_volvox_fasta_and_bam.svg'), result);
-          expect(result).toBeTruthy();
-        case 7:
-        case "end":
-          return _context3.stop();
-      }
-    }
-  }, _callee3);
-})), timeout);
-test('renders volvox with variety of args (noRasterize)', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee4() {
-  var fp, result;
-  return _regenerator.default.wrap(function _callee4$(_context4) {
-    while (1) {
-      switch (_context4.prev = _context4.next) {
-        case 0:
-          fp = function fp(f) {
-            return require.resolve('../data/volvox/' + f);
-          };
-          console.error = jest.fn();
-          _context4.next = 4;
-          return (0, _renderRegion.renderRegion)({
-            fasta: fp('volvox.fa'),
-            trackList: [['bam', [fp('volvox-sorted.bam')]], ['cram', [fp('volvox-sorted.cram')]], ['bigwig', [fp('volvox-sorted.bam.coverage.bw')]], ['vcfgz', [fp('volvox.filtered.vcf.gz')]], ['gffgz', [fp('volvox.sort.gff3.gz')]], ['bigbed', [fp('volvox.bb')]], ['bedgz', [fp('volvox-bed12.bed.gz')]]],
-            loc: 'ctgA:1000-2000',
-            noRasterize: true
-          });
-        case 4:
-          result = _context4.sent;
-          // can't do a snapshot test here, slightly inconsistent results(?)
-          _fs.default.writeFileSync(require.resolve('../test/svg_from_volvox_fasta_and_bam_norasterize.svg'), result);
-          expect(result).toBeTruthy();
-        case 7:
-        case "end":
-          return _context4.stop();
-      }
-    }
-  }, _callee4);
-})), timeout);
-
+global.nodeImage = canvas_1.Image;
+global.nodeCreateCanvas = canvas_1.createCanvas;
+xtest('renders a region with --session and --config args', async () => {
+    const result = await (0, renderRegion_1.renderRegion)({
+        session: require.resolve('../test/clingen_session.json'),
+        config: require.resolve('../data/config.json'),
+    });
+    fs_1.default.writeFileSync('svg_from_config_and_session_param.svg', result);
+    expect(result).toMatchSnapshot();
+}, 40000);
+xtest('renders a region with --session, --tracks, and --assembly args', async () => {
+    const result = await (0, renderRegion_1.renderRegion)({
+        session: require.resolve('../test/clingen_session.json'),
+        tracks: require.resolve('../data/tracks.json'),
+        assembly: require.resolve('../data/assembly.json'),
+    });
+    fs_1.default.writeFileSync('svg_from_separate_session_and_tracks.svg', result);
+    expect(result).toMatchSnapshot();
+}, 40000);
+test('renders volvox with variety of args', async () => {
+    const fp = f => require.resolve('../data/volvox/' + f);
+    console.error = jest.fn();
+    const result = await (0, renderRegion_1.renderRegion)({
+        fasta: fp('volvox.fa'),
+        trackList: [
+            ['bam', [fp('volvox-sorted.bam')]],
+            ['cram', [fp('volvox-sorted.cram')]],
+            ['bigwig', [fp('volvox-sorted.bam.coverage.bw')]],
+            ['vcfgz', [fp('volvox.filtered.vcf.gz')]],
+            ['gffgz', [fp('volvox.sort.gff3.gz')]],
+            ['bigbed', [fp('volvox.bb')]],
+            ['bedgz', [fp('volvox-bed12.bed.gz')]],
+        ],
+        loc: 'ctgA:1000-2000',
+    });
+    fs_1.default.writeFileSync(require.resolve('../test/svg_from_volvox_fasta_and_bam.svg'), result);
+    expect(result).toBeTruthy();
+}, 40000);
+xtest('renders human large region with remote urls', async () => {
+    const result = await (0, renderRegion_1.renderRegion)({
+        fasta: 'https://jbrowse.org/genomes/GRCh38/fasta/hg38.prefix.fa.gz',
+        trackList: [
+            [
+                'cram',
+                [
+                    'https://s3.amazonaws.com/jbrowse.org/genomes/GRCh38/skbr3/skbr3.ont.sort.mod.cram',
+                    'force:true',
+                ],
+            ],
+        ],
+        loc: '1:10,000,000-10,030,000',
+    });
+    fs_1.default.writeFileSync(require.resolve('../test/human_remote_urls_large_region.svg'), result);
+    expect(result).toBeTruthy();
+}, 120000);
+xtest('renders volvox with remote urls', async () => {
+    const result = await (0, renderRegion_1.renderRegion)({
+        fasta: 'https://jbrowse.org/code/jb2/main/test_data/volvox/volvox.fa',
+        trackList: [
+            [
+                'bam',
+                [
+                    'https://jbrowse.org/code/jb2/main/test_data/volvox/volvox-sorted.bam',
+                ],
+            ],
+        ],
+        loc: 'ctgA:1-1000',
+    });
+    fs_1.default.writeFileSync(require.resolve('../test/volvox_remote_region.svg'), result);
+    expect(result).toBeTruthy();
+}, 20000);
+test('renders volvox with variety of args (noRasterize)', async () => {
+    const fp = f => require.resolve('../data/volvox/' + f);
+    console.error = jest.fn();
+    const result = await (0, renderRegion_1.renderRegion)({
+        fasta: fp('volvox.fa'),
+        trackList: [
+            ['bam', [fp('volvox-sorted.bam')]],
+            ['cram', [fp('volvox-sorted.cram')]],
+            ['bigwig', [fp('volvox-sorted.bam.coverage.bw')]],
+            ['vcfgz', [fp('volvox.filtered.vcf.gz')]],
+            ['gffgz', [fp('volvox.sort.gff3.gz')]],
+            ['bigbed', [fp('volvox.bb')]],
+            ['bedgz', [fp('volvox-bed12.bed.gz')]],
+        ],
+        loc: 'ctgA:1000-2000',
+        noRasterize: true,
+    });
+    fs_1.default.writeFileSync(require.resolve('../test/svg_from_volvox_fasta_and_bam_norasterize.svg'), result);
+    expect(result).toBeTruthy();
+}, 40000);
 // commented out for using remote files currently
-xtest('configtracks arg with urls', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee5() {
-  var result;
-  return _regenerator.default.wrap(function _callee5$(_context5) {
-    while (1) {
-      switch (_context5.prev = _context5.next) {
-        case 0:
-          _context5.next = 2;
-          return (0, _renderRegion.renderRegion)({
-            config: 'data/config.json',
-            trackList: [['configtracks', ['ncbi_refseq_109_hg38']]],
-            assembly: 'GRCh38',
-            loc: 'chr1:50,000-60,000'
-          });
-        case 2:
-          result = _context5.sent;
-          // can't do a snapshot test here, slightly inconsistent results(?)
-          _fs.default.writeFileSync('svg_configtracks_simple.svg', result);
-          expect(result).toBeTruthy();
-        case 5:
-        case "end":
-          return _context5.stop();
-      }
-    }
-  }, _callee5);
-})), timeout * 3);
-test('configtracks arg with local files', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee6() {
-  var result;
-  return _regenerator.default.wrap(function _callee6$(_context6) {
-    while (1) {
-      switch (_context6.prev = _context6.next) {
-        case 0:
-          _context6.next = 2;
-          return (0, _renderRegion.renderRegion)({
-            config: require.resolve('../data/volvox/config.json'),
-            trackList: [['configtracks', ['volvox_sv']]],
-            assembly: 'volvox',
-            loc: 'ctgA:1-50,000'
-          });
-        case 2:
-          result = _context6.sent;
-          // can't do a snapshot test here, slightly inconsistent results(?)
-          _fs.default.writeFileSync(require.resolve('../test/svg_configtracks_local.svg'), result);
-          expect(result).toBeTruthy();
-        case 5:
-        case "end":
-          return _context6.stop();
-      }
-    }
-  }, _callee6);
-})), timeout * 3);
-xtest('renders --hic', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee7() {
-  var result;
-  return _regenerator.default.wrap(function _callee7$(_context7) {
-    while (1) {
-      switch (_context7.prev = _context7.next) {
-        case 0:
-          _context7.next = 2;
-          return (0, _renderRegion.renderRegion)({
-            fasta: 'https://jbrowse.org/genomes/hg19/fasta/hg19.fa.gz',
-            trackList: [['hic', ['https://s3.amazonaws.com/igv.broadinstitute.org/data/hic/intra_nofrag_30.hic']]],
-            loc: '1:2,000,000-10,000,000'
-          });
-        case 2:
-          result = _context7.sent;
-          _fs.default.writeFileSync(require.resolve('../test/svg_from_human_hic.svg'), result);
-          expect(result).toBeTruthy();
-        case 5:
-        case "end":
-          return _context7.stop();
-      }
-    }
-  }, _callee7);
-})), 20000);
+xtest('configtracks arg with urls', async () => {
+    const result = await (0, renderRegion_1.renderRegion)({
+        config: 'data/config.json',
+        trackList: [['configtracks', ['ncbi_refseq_109_hg38']]],
+        assembly: 'GRCh38',
+        loc: 'chr1:50,000-60,000',
+    });
+    fs_1.default.writeFileSync('svg_configtracks_simple.svg', result);
+    expect(result).toBeTruthy();
+}, 40000);
+test('configtracks arg with local files', async () => {
+    const result = await (0, renderRegion_1.renderRegion)({
+        config: require.resolve('../data/volvox/config.json'),
+        trackList: [['configtracks', ['volvox_sv']]],
+        assembly: 'volvox',
+        loc: 'ctgA:1-50,000',
+    });
+    fs_1.default.writeFileSync(require.resolve('../test/svg_configtracks_local.svg'), result);
+    expect(result).toBeTruthy();
+}, 40000);
+xtest('renders --hic', async () => {
+    const result = await (0, renderRegion_1.renderRegion)({
+        fasta: 'https://jbrowse.org/genomes/hg19/fasta/hg19.fa.gz',
+        trackList: [
+            [
+                'hic',
+                [
+                    'https://s3.amazonaws.com/igv.broadinstitute.org/data/hic/intra_nofrag_30.hic',
+                ],
+            ],
+        ],
+        loc: '1:2,000,000-10,000,000',
+    });
+    fs_1.default.writeFileSync(require.resolve('../test/svg_from_human_hic.svg'), result);
+    expect(result).toBeTruthy();
+}, 20000);
+//# sourceMappingURL=index.testmod.js.map

package/dist/index.testmod.js.map

@@ -0,0 +1 @@
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package/dist/parseArgv.d.ts

@@ -0,0 +1,8 @@
+export type Entry = [string, string[]];
+export declare function parseArgv(argv: string[]): Entry[];
+export declare function standardizeArgv(args: Entry[], trackTypes: string[]): {
+    [key: string]: unknown;
+    trackList: Entry[];
+    out?: string | undefined;
+    pngwidth?: string | undefined;
+};

package/dist/parseArgv.js

@@ -1,38 +1,47 @@
 "use strict";
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.parseArgv = parseArgv;
-exports.standardizeArgv = standardizeArgv;
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.standardizeArgv = exports.parseArgv = void 0;
+// example (see parseArgv.test.js):
+// const args =
+//   '--bam dad.bam color:red --vcf variants.vcf --bam mom.bam --defaultSession --out out.svg --noRasterize'
+//
+// expect(parseArgv(args.split(' '))).toEqual([
+//   ['bam', ['dad.bam', 'color:red']],
+//   ['vcf', ['variants.vcf']],
+//   ['bam', ['mom.bam']],
+//   ['defaultSession', []],
+//   ['out', ['out.svg']],
+//   ['noRasterize', []],
+// ])
 function parseArgv(argv) {
-  var map = [];
-  while (argv.length) {
-    var val = argv[0].slice(2);
-    argv = argv.slice(1);
-    var next = argv.findIndex(function (arg) {
-      return arg.startsWith('-');
-    });
-    if (next !== -1) {
-      map.push([val, argv.slice(0, next)]);
-      argv = argv.slice(next);
-    } else {
-      map.push([val, argv]);
-      break;
+    const map = [];
+    while (argv.length) {
+        const val = argv[0].slice(2);
+        argv = argv.slice(1);
+        const next = argv.findIndex(arg => arg.startsWith('-'));
+        if (next !== -1) {
+            map.push([val, argv.slice(0, next)]);
+            argv = argv.slice(next);
+        }
+        else {
+            map.push([val, argv]);
+            break;
+        }
     }
-  }
-  return map;
+    return map;
 }
+exports.parseArgv = parseArgv;
 function standardizeArgv(args, trackTypes) {
-  var result = {
-    trackList: []
-  };
-  args.forEach(function (arg) {
-    if (trackTypes.includes(arg[0])) {
-      result.trackList.push(arg);
-    } else {
-      result[arg[0]] = arg[1][0] || true;
-    }
-  });
-  return result;
-}
+    const result = { trackList: [] };
+    args.forEach(arg => {
+        if (trackTypes.includes(arg[0])) {
+            result.trackList.push(arg);
+        }
+        else {
+            result[arg[0]] = arg[1][0] || true;
+        }
+    });
+    return result;
+}
+exports.standardizeArgv = standardizeArgv;
+//# sourceMappingURL=parseArgv.js.map

package/dist/parseArgv.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"parseArgv.js","sourceRoot":"","sources":["../src/parseArgv.ts"],"names":[],"mappings":";;;AAEA,mCAAmC;AACnC,eAAe;AACf,4GAA4G;AAC5G,EAAE;AACF,+CAA+C;AAC/C,uCAAuC;AACvC,+BAA+B;AAC/B,0BAA0B;AAC1B,4BAA4B;AAC5B,0BAA0B;AAC1B,yBAAyB;AACzB,KAAK;AACL,SAAgB,SAAS,CAAC,IAAc;IACtC,MAAM,GAAG,GAAG,EAAa,CAAA;IACzB,OAAO,IAAI,CAAC,MAAM,EAAE;QAClB,MAAM,GAAG,GAAG,IAAI,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;QAC5B,IAAI,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;QACpB,MAAM,IAAI,GAAG,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,UAAU,CAAC,GAAG,CAAC,CAAC,CAAA;QAEvD,IAAI,IAAI,KAAK,CAAC,CAAC,EAAE;YACf,GAAG,CAAC,IAAI,CAAC,CAAC,GAAG,EAAE,IAAI,CAAC,KAAK,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC,CAAC,CAAA;YACpC,IAAI,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;SACxB;aAAM;YACL,GAAG,CAAC,IAAI,CAAC,CAAC,GAAG,EAAE,IAAI,CAAC,CAAC,CAAA;YACrB,MAAK;SACN;KACF;IACD,OAAO,GAAG,CAAA;AACZ,CAAC;AAhBD,8BAgBC;AAED,SAAgB,eAAe,CAAC,IAAa,EAAE,UAAoB;IACjE,MAAM,MAAM,GAAG,EAAE,SAAS,EAAE,EAAE,EAK7B,CAAA;IACD,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,EAAE;QACjB,IAAI,UAAU,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,EAAE;YAC/B,MAAM,CAAC,SAAS,CAAC,IAAI,CAAC,GAAG,CAAC,CAAA;SAC3B;aAAM;YACL,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,IAAI,CAAA;SACnC;IACH,CAAC,CAAC,CAAA;IACF,OAAO,MAAM,CAAA;AACf,CAAC;AAfD,0CAeC"}

package/dist/parseArgv.testmod.d.ts

@@ -0,0 +1 @@
+export {};

package/dist/parseArgv.testmod.js

@@ -1,7 +1,26 @@
 "use strict";
-
-var _parseArgv = require("./parseArgv");
-test('parse', function () {
-  var args = '--bam dad.bam color:red --vcf variants.vcf --bam mom.bam --defaultSession --out out.svg --noRasterize';
-  expect((0, _parseArgv.parseArgv)(args.split(' '))).toEqual([['bam', ['dad.bam', 'color:red']], ['vcf', ['variants.vcf']], ['bam', ['mom.bam']], ['defaultSession', []], ['out', ['out.svg']], ['noRasterize', []]]);
-});
+Object.defineProperty(exports, "__esModule", { value: true });
+const parseArgv_1 = require("./parseArgv");
+test('parse', () => {
+    const args = '--bam dad.bam color:red --vcf variants.vcf --bam mom.bam --defaultSession --out out.svg --noRasterize';
+    expect((0, parseArgv_1.parseArgv)(args.split(' '))).toEqual([
+        ['bam', ['dad.bam', 'color:red']],
+        ['vcf', ['variants.vcf']],
+        ['bam', ['mom.bam']],
+        ['defaultSession', []],
+        ['out', ['out.svg']],
+        ['noRasterize', []],
+    ]);
+});
+test('parse', () => {
+    const args = '--bam dad.bam color:red --vcf variants.vcf --bam mom.bam force:true --defaultSession --out out.svg --noRasterize';
+    expect((0, parseArgv_1.parseArgv)(args.split(' '))).toEqual([
+        ['bam', ['dad.bam', 'color:red']],
+        ['vcf', ['variants.vcf']],
+        ['bam', ['mom.bam', 'force:true']],
+        ['defaultSession', []],
+        ['out', ['out.svg']],
+        ['noRasterize', []],
+    ]);
+});
+//# sourceMappingURL=parseArgv.testmod.js.map

package/dist/parseArgv.testmod.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"parseArgv.testmod.js","sourceRoot":"","sources":["../src/parseArgv.testmod.js"],"names":[],"mappings":";;AAAA,2CAAuC;AAEvC,IAAI,CAAC,OAAO,EAAE,GAAG,EAAE;IACjB,MAAM,IAAI,GACR,uGAAuG,CAAA;IAEzG,MAAM,CAAC,IAAA,qBAAS,EAAC,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC;QACzC,CAAC,KAAK,EAAE,CAAC,SAAS,EAAE,WAAW,CAAC,CAAC;QACjC,CAAC,KAAK,EAAE,CAAC,cAAc,CAAC,CAAC;QACzB,CAAC,KAAK,EAAE,CAAC,SAAS,CAAC,CAAC;QACpB,CAAC,gBAAgB,EAAE,EAAE,CAAC;QACtB,CAAC,KAAK,EAAE,CAAC,SAAS,CAAC,CAAC;QACpB,CAAC,aAAa,EAAE,EAAE,CAAC;KACpB,CAAC,CAAA;AACJ,CAAC,CAAC,CAAA;AAEF,IAAI,CAAC,OAAO,EAAE,GAAG,EAAE;IACjB,MAAM,IAAI,GACR,kHAAkH,CAAA;IAEpH,MAAM,CAAC,IAAA,qBAAS,EAAC,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC;QACzC,CAAC,KAAK,EAAE,CAAC,SAAS,EAAE,WAAW,CAAC,CAAC;QACjC,CAAC,KAAK,EAAE,CAAC,cAAc,CAAC,CAAC;QACzB,CAAC,KAAK,EAAE,CAAC,SAAS,EAAE,YAAY,CAAC,CAAC;QAClC,CAAC,gBAAgB,EAAE,EAAE,CAAC;QACtB,CAAC,KAAK,EAAE,CAAC,SAAS,CAAC,CAAC;QACpB,CAAC,aAAa,EAAE,EAAE,CAAC;KACpB,CAAC,CAAA;AACJ,CAAC,CAAC,CAAA"}

package/dist/renderRegion.d.ts

@@ -0,0 +1,35 @@
+import { Entry } from './parseArgv';
+export interface Opts {
+    noRasterize?: boolean;
+    loc?: string;
+    width?: number;
+    session?: string;
+    assembly?: string;
+    config?: string;
+    fasta?: string;
+    aliases?: string;
+    cytobands?: string;
+    defaultSession?: string;
+    trackList: Entry[];
+    tracks?: string;
+}
+interface Assembly {
+    name: string;
+    sequence: Record<string, unknown>;
+    refNameAliases?: Record<string, unknown>;
+    cytobands?: Record<string, unknown>;
+}
+interface Track {
+    trackId: string;
+    [key: string]: unknown;
+}
+interface Config {
+    assemblies: Assembly[];
+    assembly: Assembly;
+    tracks: Track[];
+    [key: string]: unknown;
+}
+export declare function readData({ assembly: asm, config, session, fasta, aliases, cytobands, defaultSession, tracks, trackList, }: Opts): Config;
+export declare const muiCache: import("@emotion/utils").EmotionCache;
+export declare function renderRegion(opts: Opts): Promise<string>;
+export {};