@jbrowse/img 1.7.5 → 1.7.8
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +13 -6
- package/package.json +4 -4
package/README.md
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@@ -10,7 +10,7 @@ You don't need to have JBrowse 2 installed to use this tool. The tool can genera
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## Screenshot
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More examples [EXAMPLES.md](EXAMPLES.md)
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@@ -51,14 +51,21 @@ jb2export --fasta yourfile.fa --bam yourfile.bam --loc chr1:1,000,000-1,001,000
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If `--out` is not specified it writes to out.svg
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### Generate
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### Generate PNG instead of SVG
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install rsvg-convert to your system e.g. with `sudo apt install librsvg2-bin`)
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Supply a file with the png extension to `--out`, uses rsvg-convert so you will
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need to install rsvg-convert to your system e.g. with `sudo apt install librsvg2-bin`
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```
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jb2export --fasta yourfile.fa --bam yourfile.bam --loc chr1:1,000,000-1,001,000 --out file.png
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```
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### Generate PDF instead of SVG
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Supply a file with the pdf extension to `--out`, uses rsvg-convert so you will
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need to install rsvg-convert to your system e.g. with `sudo apt install librsvg2-bin`
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```
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jb2export --fasta yourfile.fa --bam yourfile.bam --loc chr1:1,000,000-1,001,000 --out file.pdf
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```
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@@ -66,7 +73,7 @@ jb2export --fasta yourfile.fa --bam yourfile.bam --loc chr1:1,000,000-1,001,000
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This example shows using remote files, e.g. with human hg19 and several tracks
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Note the use of --aliases
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Note the use of --aliases, which smoothes over refname differences e.g. fasta
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contains 1 for chr1, and bigbed contains chr1, gff contains NC_000001.10
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```
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package/package.json
CHANGED
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@@ -1,6 +1,6 @@
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{
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"name": "@jbrowse/img",
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"version": "1.7.
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"version": "1.7.8",
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"main": "index.js",
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"author": "JBrowse Team",
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"license": "Apache-2.0",
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@@ -29,8 +29,8 @@
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},
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"dependencies": {
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"@babel/runtime": "^7.17.9",
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"@jbrowse/plugin-linear-genome-view": "^1.7.
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"@jbrowse/react-linear-genome-view": "^1.7.
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"@jbrowse/plugin-linear-genome-view": "^1.7.8",
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"@jbrowse/react-linear-genome-view": "^1.7.8",
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"abortcontroller-polyfill": "^1.7.3",
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"mobx": "^5.10.1",
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"node-fetch": "^2.6.7",
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"publishConfig": {
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"access": "public"
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},
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"gitHead": "
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"gitHead": "b429fa2bb5734fc8a5380988f6dfdd3f7a41a39f"
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}
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