@jbrowse/embedded-core 5.0.0-beta.7 → 5.0.0-beta.9

package/esm/EmbeddedSessionMixin.d.ts

@@ -4,7 +4,7 @@ export interface EmbeddedSessionParent {
     version: string;
     assemblyManager: AssemblyManager;
     config: {
-        assemblyName: string;
+        assemblyNames: string[];
     };
 }
 /**
@@ -14,23 +14,23 @@ export interface EmbeddedSessionParent {
  * they compose and the three getters that read the root model. The twin of
  * {@link createEmbeddedRootModel} one level down.
  *
- * A mixin the product composes, deliberately, rather than a factory taking the
- * product's view type and tracks mixin as parameters. That factory is the
- * obvious shape and it does not work: `types.compose`'s overloads are declared
- * over `IModelType<P, O, FC, FS>`, so a model handed in as a naked type
- * parameter has nothing to infer those four from and the composed result
- * degrades — `session.view` becomes `any`, which typechecks at every embedder
- * call site and is caught by nothing. Keeping every argument to `compose`
- * concrete is what keeps the products' views typed.
+ * Each product composes this mixin. A factory taking the product's view type
+ * and tracks mixin as parameters does not typecheck usefully:
+ * `types.compose`'s overloads are declared over `IModelType<P, O, FC, FS>`, so
+ * a model passed as a naked type parameter gives nothing to infer those four
+ * from, and `session.view` becomes `any` at every embedder call site with no
+ * type error. Passing only concrete types to `compose` keeps the products'
+ * views typed.
  *
- * So each product still spells out its own tracks mixin, `view` prop, and the
- * `views`/`addView`/`removeView` members that read `self.view` — those are the
- * ones that need its concrete view type.
+ * Each product therefore declares its tracks mixin, `view` prop, and the
+ * `views`/`addView`/`removeView` members that read `self.view`, because those
+ * members need its concrete view type.
  */
 export declare function EmbeddedSessionMixin(pluginManager: PluginManager): import("@jbrowse/mobx-state-tree").IModelType<Omit<Omit<Omit<Omit<Omit<Omit<{
     id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
     name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     focusedViewId: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+    highlights: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util/highlights").HighlightType, import("@jbrowse/core/util/highlights").HighlightType, import("@jbrowse/core/util/highlights").HighlightType>>, [undefined]>;
     highlightsVisible: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
     heldForMissingPlugins: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/product-core").HeldNode[] | undefined, import("@jbrowse/product-core").HeldNode[] | undefined, import("@jbrowse/product-core").HeldNode[] | undefined>, [undefined]>;
 }, never>, "activeWidgets" | "drawerPosition" | "drawerWidth" | "minimized" | "widgets"> & {
@@ -42,10 +42,11 @@ export declare function EmbeddedSessionMixin(pluginManager: PluginManager): impo
 }, "connectionInstances" | "connectionTrackConfigs"> & {
     connectionInstances: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyType>, [undefined]>;
     connectionTrackConfigs: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<Record<string, import("@jbrowse/product-core").ConnectionTrackConfigEntry>, Record<string, import("@jbrowse/product-core").ConnectionTrackConfigEntry>, Record<string, import("@jbrowse/product-core").ConnectionTrackConfigEntry>>, [undefined]>;
-}, never>, never>, "focusedViewId" | "heldForMissingPlugins" | "highlightsVisible" | "id" | "name"> & Omit<{
+}, never>, never>, "focusedViewId" | "heldForMissingPlugins" | "highlights" | "highlightsVisible" | "id" | "name"> & Omit<{
     id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
     name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     focusedViewId: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+    highlights: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util/highlights").HighlightType, import("@jbrowse/core/util/highlights").HighlightType, import("@jbrowse/core/util/highlights").HighlightType>>, [undefined]>;
     highlightsVisible: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
     heldForMissingPlugins: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/product-core").HeldNode[] | undefined, import("@jbrowse/product-core").HeldNode[] | undefined, import("@jbrowse/product-core").HeldNode[] | undefined>, [undefined]>;
 }, never>, {
@@ -547,10 +548,7 @@ export declare function EmbeddedSessionMixin(pluginManager: PluginManager): impo
             }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>) | undefined;
             readonly assemblyNamesList: string[];
             readonly configuredAssemblyNames: Set<string>;
-            readonly assemblyList: (import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<Record<string, any>> & {
-                setSubschema(slotName: string, data: Record<string, unknown>): any;
-                setSlot(slotName: string, value: unknown): void;
-            } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
+            readonly assemblyList: import("@jbrowse/core/configuration").AnyConfigurationModel[];
             readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
         } & {
             settleAssemblyResolution(assemblyName: string): Promise<void>;
@@ -1339,10 +1337,7 @@ export declare function EmbeddedSessionMixin(pluginManager: PluginManager): impo
             }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>) | undefined;
             readonly assemblyNamesList: string[];
             readonly configuredAssemblyNames: Set<string>;
-            readonly assemblyList: (import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<Record<string, any>> & {
-                setSubschema(slotName: string, data: Record<string, unknown>): any;
-                setSlot(slotName: string, value: unknown): void;
-            } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
+            readonly assemblyList: import("@jbrowse/core/configuration").AnyConfigurationModel[];
             readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
         } & {
             settleAssemblyResolution(assemblyName: string): Promise<void>;
@@ -1642,10 +1637,7 @@ export declare function EmbeddedSessionMixin(pluginManager: PluginManager): impo
 } & {
     readonly jbrowse: any;
     readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
-    readonly configuration: import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<Record<string, any>> & {
-        setSubschema(slotName: string, data: Record<string, unknown>): any;
-        setSlot(slotName: string, value: unknown): void;
-    } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
+    readonly configuration: import("@jbrowse/core/configuration").ConfigNodeProps<any> & import("@jbrowse/core/configuration").ConfigNodeActions & import("@jbrowse/core/configuration").ConfigNodeBrand<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
     readonly adminMode: boolean;
     readonly textSearchManager: import("@jbrowse/core/TextSearch/TextSearchManager").default;
 } & {
@@ -1666,7 +1658,10 @@ export declare function EmbeddedSessionMixin(pluginManager: PluginManager): impo
     clearSelection(): void;
     setHovered(thing: unknown): void;
     setHighlightsVisible(arg: boolean): void;
-    revealHighlights(): void;
+    addHighlight(highlight: import("@jbrowse/core/util/highlights").HighlightType): void;
+    removeHighlight(highlight: import("@jbrowse/core/util/highlights").HighlightType): void;
+    updateHighlight(old: import("@jbrowse/core/util/highlights").HighlightType, updates: Partial<import("@jbrowse/core/util/highlights").HighlightType>): void;
+    setHighlights(highlights: import("@jbrowse/core/util/highlights").HighlightType[]): void;
     setPreferenceOverride(key: string, value: unknown): void;
     clearPreferenceOverrides(): void;
     clearPreferenceOverride(key: string): void;
@@ -1707,12 +1702,15 @@ export declare function EmbeddedSessionMixin(pluginManager: PluginManager): impo
     popoutWidget(): void;
     returnWidgetToDrawer(): void;
     hideAllWidgets(): void;
+    afterAttach(): void;
+} & {
+    openWidget(typeName: string, id: string, initialState?: any, conf?: unknown): any;
+} & {
     editConfiguration(configuration: import("@jbrowse/core/configuration").AnyConfigurationModel | {
         trackId: string;
     }, opts?: {
         expandedDisplayId?: string;
     }): void;
-    afterAttach(): void;
 } & {
     readonly connections: import("@jbrowse/core/pluggableElementTypes/models/baseConnectionConfig").BaseConnectionConfigModel[];
 } & {
@@ -1750,6 +1748,12 @@ export declare function EmbeddedSessionMixin(pluginManager: PluginManager): impo
 } & {
     setThemeMode(mode: 'light' | 'dark'): void;
 } & {
+    /**
+     * #getter
+     * An embedded view is drawn with no title bar above it, so its menu lives
+     * in the view's own controls.
+     */
+    readonly viewTitleBars: boolean;
     /**
      * #getter
      */
@@ -2250,10 +2254,7 @@ export declare function EmbeddedSessionMixin(pluginManager: PluginManager): impo
         }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>) | undefined;
         readonly assemblyNamesList: string[];
         readonly configuredAssemblyNames: Set<string>;
-        readonly assemblyList: (import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<Record<string, any>> & {
-            setSubschema(slotName: string, data: Record<string, unknown>): any;
-            setSlot(slotName: string, value: unknown): void;
-        } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
+        readonly assemblyList: import("@jbrowse/core/configuration").AnyConfigurationModel[];
         readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
     } & {
         settleAssemblyResolution(assemblyName: string): Promise<void>;
@@ -3025,10 +3026,7 @@ export declare function EmbeddedSessionMixin(pluginManager: PluginManager): impo
         }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>) | undefined;
         readonly assemblyNamesList: string[];
         readonly configuredAssemblyNames: Set<string>;
-        readonly assemblyList: (import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<Record<string, any>> & {
-            setSubschema(slotName: string, data: Record<string, unknown>): any;
-            setSlot(slotName: string, value: unknown): void;
-        } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
+        readonly assemblyList: import("@jbrowse/core/configuration").AnyConfigurationModel[];
         readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
     } & {
         settleAssemblyResolution(assemblyName: string): Promise<void>;

package/esm/EmbeddedSessionMixin.js

@@ -8,18 +8,17 @@ import { EmbeddedSessionThemeMixin } from './EmbeddedSessionThemeMixin.js';
  * they compose and the three getters that read the root model. The twin of
  * {@link createEmbeddedRootModel} one level down.
  *
- * A mixin the product composes, deliberately, rather than a factory taking the
- * product's view type and tracks mixin as parameters. That factory is the
- * obvious shape and it does not work: `types.compose`'s overloads are declared
- * over `IModelType<P, O, FC, FS>`, so a model handed in as a naked type
- * parameter has nothing to infer those four from and the composed result
- * degrades — `session.view` becomes `any`, which typechecks at every embedder
- * call site and is caught by nothing. Keeping every argument to `compose`
- * concrete is what keeps the products' views typed.
+ * Each product composes this mixin. A factory taking the product's view type
+ * and tracks mixin as parameters does not typecheck usefully:
+ * `types.compose`'s overloads are declared over `IModelType<P, O, FC, FS>`, so
+ * a model passed as a naked type parameter gives nothing to infer those four
+ * from, and `session.view` becomes `any` at every embedder call site with no
+ * type error. Passing only concrete types to `compose` keeps the products'
+ * views typed.
  *
- * So each product still spells out its own tracks mixin, `view` prop, and the
- * `views`/`addView`/`removeView` members that read `self.view` — those are the
- * ones that need its concrete view type.
+ * Each product therefore declares its tracks mixin, `view` prop, and the
+ * `views`/`addView`/`removeView` members that read `self.view`, because those
+ * members need its concrete view type.
  */
 export function EmbeddedSessionMixin(pluginManager) {
     return types
@@ -28,6 +27,14 @@ export function EmbeddedSessionMixin(pluginManager) {
     // members, so their order relative to each other is not load-bearing
     ReferenceManagementSessionMixin(pluginManager), TrackMenuSessionMixin(pluginManager), EmbeddedSessionThemeMixin(pluginManager))
         .views(self => ({
+        /**
+         * #getter
+         * An embedded view is drawn with no title bar above it, so its menu lives
+         * in the view's own controls.
+         */
+        get viewTitleBars() {
+            return false;
+        },
         /**
          * #getter
          */
@@ -42,7 +49,7 @@ export function EmbeddedSessionMixin(pluginManager) {
         // them through `self.jbrowse` (= root.config), so re-declaring here would
         // just duplicate the base getters with looser types
         get assemblyNames() {
-            return [getParent(self).config.assemblyName];
+            return getParent(self).config.assemblyNames;
         },
         /**
          * #getter

package/esm/EmbeddedSessionThemeMixin.d.ts

@@ -11,6 +11,7 @@ export declare function EmbeddedSessionThemeMixin(pluginManager: PluginManager):
     id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
     name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     focusedViewId: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+    highlights: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util/highlights").HighlightType, import("@jbrowse/core/util/highlights").HighlightType, import("@jbrowse/core/util/highlights").HighlightType>>, [undefined]>;
     highlightsVisible: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
     heldForMissingPlugins: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/product-core").HeldNode[] | undefined, import("@jbrowse/product-core").HeldNode[] | undefined, import("@jbrowse/product-core").HeldNode[] | undefined>, [undefined]>;
 }, never>, {
@@ -512,10 +513,7 @@ export declare function EmbeddedSessionThemeMixin(pluginManager: PluginManager):
             }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>) | undefined;
             readonly assemblyNamesList: string[];
             readonly configuredAssemblyNames: Set<string>;
-            readonly assemblyList: (import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<Record<string, any>> & {
-                setSubschema(slotName: string, data: Record<string, unknown>): any;
-                setSlot(slotName: string, value: unknown): void;
-            } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
+            readonly assemblyList: import("@jbrowse/core/configuration").AnyConfigurationModel[];
             readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
         } & {
             settleAssemblyResolution(assemblyName: string): Promise<void>;
@@ -1304,10 +1302,7 @@ export declare function EmbeddedSessionThemeMixin(pluginManager: PluginManager):
             }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>) | undefined;
             readonly assemblyNamesList: string[];
             readonly configuredAssemblyNames: Set<string>;
-            readonly assemblyList: (import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<Record<string, any>> & {
-                setSubschema(slotName: string, data: Record<string, unknown>): any;
-                setSlot(slotName: string, value: unknown): void;
-            } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
+            readonly assemblyList: import("@jbrowse/core/configuration").AnyConfigurationModel[];
             readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
         } & {
             settleAssemblyResolution(assemblyName: string): Promise<void>;
@@ -1607,10 +1602,7 @@ export declare function EmbeddedSessionThemeMixin(pluginManager: PluginManager):
 } & {
     readonly jbrowse: any;
     readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
-    readonly configuration: import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<Record<string, any>> & {
-        setSubschema(slotName: string, data: Record<string, unknown>): any;
-        setSlot(slotName: string, value: unknown): void;
-    } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
+    readonly configuration: import("@jbrowse/core/configuration").ConfigNodeProps<any> & import("@jbrowse/core/configuration").ConfigNodeActions & import("@jbrowse/core/configuration").ConfigNodeBrand<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
     readonly adminMode: boolean;
     readonly textSearchManager: import("@jbrowse/core/TextSearch/TextSearchManager").default;
 } & {
@@ -1631,7 +1623,10 @@ export declare function EmbeddedSessionThemeMixin(pluginManager: PluginManager):
     clearSelection(): void;
     setHovered(thing: unknown): void;
     setHighlightsVisible(arg: boolean): void;
-    revealHighlights(): void;
+    addHighlight(highlight: import("@jbrowse/core/util/highlights").HighlightType): void;
+    removeHighlight(highlight: import("@jbrowse/core/util/highlights").HighlightType): void;
+    updateHighlight(old: import("@jbrowse/core/util/highlights").HighlightType, updates: Partial<import("@jbrowse/core/util/highlights").HighlightType>): void;
+    setHighlights(highlights: import("@jbrowse/core/util/highlights").HighlightType[]): void;
     setPreferenceOverride(key: string, value: unknown): void;
     clearPreferenceOverrides(): void;
     clearPreferenceOverride(key: string): void;
@@ -1698,20 +1693,19 @@ export declare function EmbeddedSessionThemeMixin(pluginManager: PluginManager):
 } & {
     /**
      * #action
-     * Point the session at light or dark. One write, not two: the `theme`
-     * slot is what `themeOptions` ships to the renderer, so the labels baked
-     * in the worker follow it, and `palette` is derived from the same slot,
-     * so what React draws follows it too. An embedder who sets only a
-     * React-side palette leaves the baked labels behind.
+     * Switch the session to light or dark. `themeOptions` sends the `theme`
+     * slot to the renderer, so labels drawn in the worker follow it, and
+     * `palette` is derived from the same slot, so React-drawn elements
+     * follow it too. An embedder who sets only a React-side palette leaves
+     * the worker-drawn labels in the old mode.
      *
-     * Merges rather than replaces, at both levels. `theme` is a frozen slot,
-     * so a bare `setConf(session, 'theme', { palette: { mode } })` — the
-     * obvious form, and what the build-your-own examples each wrote — drops
-     * every other key in it. That silently discards whatever the host passed
-     * as `createViewState`'s `configuration.theme` (a brand `primary`, say)
-     * the first time their dark-mode toggle fires. `resolvePalette` spreads
+     * Merges into the existing theme at both levels. `theme` is a frozen
+     * slot, so `setConf(session, 'theme', { palette: { mode } })` replaces
+     * every other key in it, discarding whatever the host passed as
+     * `createViewState`'s `configuration.theme` (a brand `primary`, say) the
+     * first time their dark-mode toggle fires. `resolvePalette` spreads
      * `configTheme.palette` over the preset shallowly, so `mode` and
-     * `primary` are siblings and both levels have to survive.
+     * `primary` are siblings and both levels have to be kept.
      */
     setThemeMode(mode: 'light' | 'dark'): void;
 }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;

package/esm/EmbeddedSessionThemeMixin.js

@@ -78,20 +78,19 @@ export function EmbeddedSessionThemeMixin(pluginManager) {
         .actions(self => ({
         /**
          * #action
-         * Point the session at light or dark. One write, not two: the `theme`
-         * slot is what `themeOptions` ships to the renderer, so the labels baked
-         * in the worker follow it, and `palette` is derived from the same slot,
-         * so what React draws follows it too. An embedder who sets only a
-         * React-side palette leaves the baked labels behind.
+         * Switch the session to light or dark. `themeOptions` sends the `theme`
+         * slot to the renderer, so labels drawn in the worker follow it, and
+         * `palette` is derived from the same slot, so React-drawn elements
+         * follow it too. An embedder who sets only a React-side palette leaves
+         * the worker-drawn labels in the old mode.
          *
-         * Merges rather than replaces, at both levels. `theme` is a frozen slot,
-         * so a bare `setConf(session, 'theme', { palette: { mode } })` — the
-         * obvious form, and what the build-your-own examples each wrote — drops
-         * every other key in it. That silently discards whatever the host passed
-         * as `createViewState`'s `configuration.theme` (a brand `primary`, say)
-         * the first time their dark-mode toggle fires. `resolvePalette` spreads
+         * Merges into the existing theme at both levels. `theme` is a frozen
+         * slot, so `setConf(session, 'theme', { palette: { mode } })` replaces
+         * every other key in it, discarding whatever the host passed as
+         * `createViewState`'s `configuration.theme` (a brand `primary`, say) the
+         * first time their dark-mode toggle fires. `resolvePalette` spreads
          * `configTheme.palette` over the preset shallowly, so `mode` and
-         * `primary` are siblings and both levels have to survive.
+         * `primary` are siblings and both levels have to be kept.
          */
         setThemeMode(mode) {
             const theme = getConf(self, 'theme') ?? {};

package/esm/createEmbeddedRootModel.d.ts

@@ -32,120 +32,125 @@ export declare function createEmbeddedRootModel<SESSION extends IAnyModelType &
         configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
             readonly rpc: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
                 readonly defaultDriver: {
-                    readonly type: "string";
-                    readonly description: "the RPC driver to run data fetching on: MainThreadRpcDriver or WebWorkerRpcDriver. Leave empty to use the default for this application";
-                    readonly defaultValue: "";
-                    readonly advanced: true;
+                    type: "string";
+                } & {
+                    defaultValue: string;
                 };
                 readonly workerCount: {
-                    readonly type: "number";
-                    readonly description: "The number of workers to use. If 0 (the default) JBrowse will decide how many workers to use.";
-                    readonly defaultValue: 0;
-                    readonly advanced: true;
+                    type: "number";
+                } & {
+                    defaultValue: number;
                 };
-            }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+            }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined, undefined, import("@jbrowse/core/configuration").ConfigurationSchemaRequirement<Partial<Record<string, string[]>>, string>>>;
             readonly hierarchical: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
                 readonly sort: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
                     readonly trackNames: {
-                        readonly type: "boolean";
-                        readonly defaultValue: false;
+                        type: "boolean";
+                    } & {
+                        defaultValue: boolean;
                     };
                     readonly categories: {
-                        readonly type: "boolean";
-                        readonly defaultValue: false;
+                        type: "boolean";
+                    } & {
+                        defaultValue: boolean;
                     };
-                }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+                }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined, undefined, import("@jbrowse/core/configuration").ConfigurationSchemaRequirement<Partial<Record<string, string[]>>, string>>>;
                 readonly defaultFolderCategories: {
-                    readonly type: "stringArray";
-                    readonly description: "list of category names to display as folders by default";
-                    readonly defaultValue: readonly [];
+                    type: "stringArray";
+                } & {
+                    defaultValue: unknown;
                 };
                 readonly defaultCollapsed: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
                     readonly categoryNames: {
-                        readonly type: "stringArray";
-                        readonly defaultValue: readonly [];
+                        type: "stringArray";
+                    } & {
+                        defaultValue: unknown;
                     };
                     readonly topLevelCategories: {
-                        readonly type: "boolean";
-                        readonly defaultValue: false;
+                        type: "boolean";
+                    } & {
+                        defaultValue: boolean;
                     };
                     readonly subCategories: {
-                        readonly type: "boolean";
-                        readonly defaultValue: false;
+                        type: "boolean";
+                    } & {
+                        defaultValue: boolean;
                     };
-                }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-            }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+                }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined, undefined, import("@jbrowse/core/configuration").ConfigurationSchemaRequirement<Partial<Record<string, string[]>>, string>>>;
+            }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined, undefined, import("@jbrowse/core/configuration").ConfigurationSchemaRequirement<Partial<Record<string, string[]>>, string>>>;
             readonly preferences: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
                 readonly animationMode: {
-                    readonly model: import("@jbrowse/mobx-state-tree").ISimpleType<"disabled" | "enabled" | "system">;
-                    readonly type: "stringEnum";
-                    readonly defaultValue: "enabled";
+                    type: "stringEnum";
+                } & {
+                    model: import("@jbrowse/mobx-state-tree").ISimpleType<"disabled" | "enabled" | "system">;
+                } & {
+                    defaultValue: string;
                 };
                 readonly scrollZoom: {
-                    readonly type: "boolean";
-                    readonly defaultValue: false;
+                    type: "boolean";
+                } & {
+                    defaultValue: boolean;
                 };
                 readonly numberGrouping: {
-                    readonly type: "boolean";
-                    readonly defaultValue: true;
+                    type: "boolean";
+                } & {
+                    defaultValue: boolean;
                 };
                 readonly useWorkspaces: {
-                    readonly type: "boolean";
-                    readonly defaultValue: false;
+                    type: "boolean";
+                } & {
+                    defaultValue: boolean;
                 };
                 readonly developerMode: {
-                    readonly type: "boolean";
-                    readonly defaultValue: false;
+                    type: "boolean";
+                } & {
+                    defaultValue: boolean;
                 };
-            }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+            }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined, undefined, import("@jbrowse/core/configuration").ConfigurationSchemaRequirement<Partial<Record<string, string[]>>, string>>>;
             readonly formatDetails: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
                 readonly feature: {
-                    readonly type: "frozen";
-                    readonly description: "adds extra fields to the feature details";
-                    readonly defaultValue: {};
-                    readonly contextVariable: ["feature"];
+                    type: "frozen";
+                } & {
+                    defaultValue: unknown;
                 };
                 readonly subfeatures: {
-                    readonly type: "frozen";
-                    readonly description: "adds extra fields to the subfeatures of a feature";
-                    readonly defaultValue: {};
-                    readonly contextVariable: ["feature"];
+                    type: "frozen";
+                } & {
+                    defaultValue: unknown;
                 };
                 readonly depth: {
-                    readonly type: "maybeNumber";
-                    readonly description: "levels of subfeature the formatDetails.subfeatures callback runs on, default 2";
+                    type: "maybeNumber";
                 };
                 readonly maxDepth: {
-                    readonly type: "maybeNumber";
-                    readonly description: "hide subfeatures nested deeper than this, default no limit";
+                    type: "maybeNumber";
                 };
-            }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+            }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined, undefined, import("@jbrowse/core/configuration").ConfigurationSchemaRequirement<Partial<Record<string, string[]>>, string>>>;
             readonly formatAbout: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
                 readonly config: {
-                    readonly type: "frozen";
-                    readonly description: "formats configuration object in about dialog";
-                    readonly defaultValue: {};
-                    readonly contextVariable: ["config"];
+                    type: "frozen";
+                } & {
+                    defaultValue: unknown;
                 };
                 readonly hideUris: {
-                    readonly type: "boolean";
-                    readonly defaultValue: false;
+                    type: "boolean";
+                } & {
+                    defaultValue: boolean;
                 };
-            }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+            }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined, undefined, import("@jbrowse/core/configuration").ConfigurationSchemaRequirement<Partial<Record<string, string[]>>, string>>>;
             readonly theme: {
-                readonly type: "frozen";
-                readonly defaultValue: {};
+                type: "frozen";
+            } & {
+                defaultValue: unknown;
             };
-        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-        assembly: import("@jbrowse/mobx-state-tree").IAnyType;
-        tracks: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyType>;
+        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined, undefined, import("@jbrowse/core/configuration").ConfigurationSchemaRequirement<Partial<Record<string, string[]>>, string>>>;
+        assemblies: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyType>;
+        tracks: import("@jbrowse/mobx-state-tree").IType<Record<string, unknown>[] | null | undefined, Record<string, unknown>[], Record<string, unknown>[]>;
         internetAccounts: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyType>;
         connections: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyType>;
         aggregateTextSearchAdapters: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyType>;
         plugins: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
     }, {
-        readonly assemblies: any[];
-        readonly assemblyName: string;
+        readonly assemblyNames: string[];
         readonly rpcManager: RpcManager;
     }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;
     /**
@@ -644,10 +649,7 @@ export declare function createEmbeddedRootModel<SESSION extends IAnyModelType &
         }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>) | undefined;
         readonly assemblyNamesList: string[];
         readonly configuredAssemblyNames: Set<string>;
-        readonly assemblyList: (import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<Record<string, any>> & {
-            setSubschema(slotName: string, data: Record<string, unknown>): any;
-            setSlot(slotName: string, value: unknown): void;
-        } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
+        readonly assemblyList: import("@jbrowse/core/configuration").AnyConfigurationModel[];
         readonly rpcManager: RpcManager;
     } & {
         settleAssemblyResolution(assemblyName: string): Promise<void>;
@@ -995,120 +997,125 @@ export declare function createEmbeddedRootModel<SESSION extends IAnyModelType &
             configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
                 readonly rpc: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
                     readonly defaultDriver: {
-                        readonly type: "string";
-                        readonly description: "the RPC driver to run data fetching on: MainThreadRpcDriver or WebWorkerRpcDriver. Leave empty to use the default for this application";
-                        readonly defaultValue: "";
-                        readonly advanced: true;
+                        type: "string";
+                    } & {
+                        defaultValue: string;
                     };
                     readonly workerCount: {
-                        readonly type: "number";
-                        readonly description: "The number of workers to use. If 0 (the default) JBrowse will decide how many workers to use.";
-                        readonly defaultValue: 0;
-                        readonly advanced: true;
+                        type: "number";
+                    } & {
+                        defaultValue: number;
                     };
-                }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+                }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined, undefined, import("@jbrowse/core/configuration").ConfigurationSchemaRequirement<Partial<Record<string, string[]>>, string>>>;
                 readonly hierarchical: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
                     readonly sort: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
                         readonly trackNames: {
-                            readonly type: "boolean";
-                            readonly defaultValue: false;
+                            type: "boolean";
+                        } & {
+                            defaultValue: boolean;
                         };
                         readonly categories: {
-                            readonly type: "boolean";
-                            readonly defaultValue: false;
+                            type: "boolean";
+                        } & {
+                            defaultValue: boolean;
                         };
-                    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+                    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined, undefined, import("@jbrowse/core/configuration").ConfigurationSchemaRequirement<Partial<Record<string, string[]>>, string>>>;
                     readonly defaultFolderCategories: {
-                        readonly type: "stringArray";
-                        readonly description: "list of category names to display as folders by default";
-                        readonly defaultValue: readonly [];
+                        type: "stringArray";
+                    } & {
+                        defaultValue: unknown;
                     };
                     readonly defaultCollapsed: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
                         readonly categoryNames: {
-                            readonly type: "stringArray";
-                            readonly defaultValue: readonly [];
+                            type: "stringArray";
+                        } & {
+                            defaultValue: unknown;
                         };
                         readonly topLevelCategories: {
-                            readonly type: "boolean";
-                            readonly defaultValue: false;
+                            type: "boolean";
+                        } & {
+                            defaultValue: boolean;
                         };
                         readonly subCategories: {
-                            readonly type: "boolean";
-                            readonly defaultValue: false;
+                            type: "boolean";
+                        } & {
+                            defaultValue: boolean;
                         };
-                    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-                }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+                    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined, undefined, import("@jbrowse/core/configuration").ConfigurationSchemaRequirement<Partial<Record<string, string[]>>, string>>>;
+                }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined, undefined, import("@jbrowse/core/configuration").ConfigurationSchemaRequirement<Partial<Record<string, string[]>>, string>>>;
                 readonly preferences: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
                     readonly animationMode: {
-                        readonly model: import("@jbrowse/mobx-state-tree").ISimpleType<"disabled" | "enabled" | "system">;
-                        readonly type: "stringEnum";
-                        readonly defaultValue: "enabled";
+                        type: "stringEnum";
+                    } & {
+                        model: import("@jbrowse/mobx-state-tree").ISimpleType<"disabled" | "enabled" | "system">;
+                    } & {
+                        defaultValue: string;
                     };
                     readonly scrollZoom: {
-                        readonly type: "boolean";
-                        readonly defaultValue: false;
+                        type: "boolean";
+                    } & {
+                        defaultValue: boolean;
                     };
                     readonly numberGrouping: {
-                        readonly type: "boolean";
-                        readonly defaultValue: true;
+                        type: "boolean";
+                    } & {
+                        defaultValue: boolean;
                     };
                     readonly useWorkspaces: {
-                        readonly type: "boolean";
-                        readonly defaultValue: false;
+                        type: "boolean";
+                    } & {
+                        defaultValue: boolean;
                     };
                     readonly developerMode: {
-                        readonly type: "boolean";
-                        readonly defaultValue: false;
+                        type: "boolean";
+                    } & {
+                        defaultValue: boolean;
                     };
-                }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+                }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined, undefined, import("@jbrowse/core/configuration").ConfigurationSchemaRequirement<Partial<Record<string, string[]>>, string>>>;
                 readonly formatDetails: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
                     readonly feature: {
-                        readonly type: "frozen";
-                        readonly description: "adds extra fields to the feature details";
-                        readonly defaultValue: {};
-                        readonly contextVariable: ["feature"];
+                        type: "frozen";
+                    } & {
+                        defaultValue: unknown;
                     };
                     readonly subfeatures: {
-                        readonly type: "frozen";
-                        readonly description: "adds extra fields to the subfeatures of a feature";
-                        readonly defaultValue: {};
-                        readonly contextVariable: ["feature"];
+                        type: "frozen";
+                    } & {
+                        defaultValue: unknown;
                     };
                     readonly depth: {
-                        readonly type: "maybeNumber";
-                        readonly description: "levels of subfeature the formatDetails.subfeatures callback runs on, default 2";
+                        type: "maybeNumber";
                     };
                     readonly maxDepth: {
-                        readonly type: "maybeNumber";
-                        readonly description: "hide subfeatures nested deeper than this, default no limit";
+                        type: "maybeNumber";
                     };
-                }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+                }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined, undefined, import("@jbrowse/core/configuration").ConfigurationSchemaRequirement<Partial<Record<string, string[]>>, string>>>;
                 readonly formatAbout: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
                     readonly config: {
-                        readonly type: "frozen";
-                        readonly description: "formats configuration object in about dialog";
-                        readonly defaultValue: {};
-                        readonly contextVariable: ["config"];
+                        type: "frozen";
+                    } & {
+                        defaultValue: unknown;
                     };
                     readonly hideUris: {
-                        readonly type: "boolean";
-                        readonly defaultValue: false;
+                        type: "boolean";
+                    } & {
+                        defaultValue: boolean;
                     };
-                }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+                }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined, undefined, import("@jbrowse/core/configuration").ConfigurationSchemaRequirement<Partial<Record<string, string[]>>, string>>>;
                 readonly theme: {
-                    readonly type: "frozen";
-                    readonly defaultValue: {};
+                    type: "frozen";
+                } & {
+                    defaultValue: unknown;
                 };
-            }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-            assembly: import("@jbrowse/mobx-state-tree").IAnyType;
-            tracks: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyType>;
+            }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined, undefined, import("@jbrowse/core/configuration").ConfigurationSchemaRequirement<Partial<Record<string, string[]>>, string>>>;
+            assemblies: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyType>;
+            tracks: import("@jbrowse/mobx-state-tree").IType<Record<string, unknown>[] | null | undefined, Record<string, unknown>[], Record<string, unknown>[]>;
             internetAccounts: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyType>;
             connections: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyType>;
             aggregateTextSearchAdapters: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyType>;
             plugins: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
         }, {
-            readonly assemblies: any[];
-            readonly assemblyName: string;
+            readonly assemblyNames: string[];
             readonly rpcManager: RpcManager;
         }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;
         /**
@@ -1607,10 +1614,7 @@ export declare function createEmbeddedRootModel<SESSION extends IAnyModelType &
             }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>) | undefined;
             readonly assemblyNamesList: string[];
             readonly configuredAssemblyNames: Set<string>;
-            readonly assemblyList: (import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<Record<string, any>> & {
-                setSubschema(slotName: string, data: Record<string, unknown>): any;
-                setSlot(slotName: string, value: unknown): void;
-            } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
+            readonly assemblyList: import("@jbrowse/core/configuration").AnyConfigurationModel[];
             readonly rpcManager: RpcManager;
         } & {
             settleAssemblyResolution(assemblyName: string): Promise<void>;

package/esm/ui/EmbeddedViewContainer.js

@@ -1,26 +1,26 @@
 import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
 import { Suspense } from 'react';
 import { getSession } from '@jbrowse/core/util';
-import { useWidthSetter } from '@jbrowse/core/util/hooks';
+import { VIEW_HEADER_HEIGHT_VAR, useWidthSetter, } from '@jbrowse/core/util/hooks';
 import { makeStyles } from '@jbrowse/core/util/tss-react';
-import { Paper } from '@mui/material';
 import { observer } from 'mobx-react';
-import ViewTitle from './ViewTitle.js';
 const useStyles = makeStyles()(theme => ({
     viewContainer: {
         width: '100%',
         // clip (not hidden) so sticky descendant headers keep working
-        // xref https://stackoverflow.com/questions/43909940/why-does-overflowhidden-prevent-positionsticky-from-working
         overflow: 'clip',
-        background: theme.palette.secondary.main,
-        margin: theme.spacing(0.5),
-        padding: `0 ${theme.spacing(1)} ${theme.spacing(1)}`,
+        background: theme.palette.background.paper,
+        border: `1px solid ${theme.palette.divider}`,
+        borderRadius: theme.shape.borderRadius,
+        // no title bar above the view, so the sticky chrome that clears one pins
+        // at the top edge
+        [VIEW_HEADER_HEIGHT_VAR]: '0px',
     },
 }));
 const ViewContainer = observer(function ViewContainer({ view, children, }) {
     const { classes } = useStyles();
     const session = getSession(view);
     const ref = useWidthSetter(view);
-    return (_jsxs(Paper, { elevation: 12, ref: ref, className: classes.viewContainer, children: [session.DialogComponent ? (_jsx(Suspense, { fallback: null, children: _jsx(session.DialogComponent, { ...session.DialogProps }) })) : null, _jsx(ViewTitle, { view: view }), _jsx(Paper, { children: children })] }));
+    return (_jsxs("div", { ref: ref, className: classes.viewContainer, children: [session.DialogComponent ? (_jsx(Suspense, { fallback: null, children: _jsx(session.DialogComponent, { ...session.DialogProps }) })) : null, children] }));
 });
 export default ViewContainer;

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/embedded-core",
-  "version": "5.0.0-beta.7",
+  "version": "5.0.0-beta.9",
   "type": "module",
   "description": "JBrowse 2 code shared between embedded products",
   "keywords": [
@@ -24,13 +24,13 @@
     "esm"
   ],
   "dependencies": {
-    "@jbrowse/mobx-state-tree": "^6.5.1",
+    "@jbrowse/mobx-state-tree": "^6.5.2",
     "@mui/icons-material": "^9.4.0",
     "@mui/material": "^9.4.0",
     "mobx": "^7.0.3",
     "mobx-react": "^10.0.2",
-    "@jbrowse/core": "^5.0.0-beta.7",
-    "@jbrowse/product-core": "^5.0.0-beta.7"
+    "@jbrowse/core": "^5.0.0-beta.9",
+    "@jbrowse/product-core": "^5.0.0-beta.9"
   },
   "peerDependencies": {
     "react": ">=19.0.0",

package/esm/ui/VersionAboutDialog.d.ts

@@ -1,5 +0,0 @@
-export default function AboutDialog({ open, version, onClose, }: {
-    open: boolean;
-    version: string;
-    onClose: () => void;
-}): import("react").JSX.Element;

package/esm/ui/VersionAboutDialog.js

@@ -1,13 +0,0 @@
-import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
-import { ExternalLink, InfoDialog } from '@jbrowse/core/ui';
-import { makeStyles } from '@jbrowse/core/util/tss-react';
-import { Typography } from '@mui/material';
-const useStyles = makeStyles()({
-    content: {
-        minWidth: 800,
-    },
-});
-export default function AboutDialog({ open, version, onClose, }) {
-    const { classes } = useStyles();
-    return (_jsx(InfoDialog, { open: open, onClose: onClose, maxWidth: "xl", title: `JBrowse v${version}`, children: _jsxs("div", { className: classes.content, children: [_jsx(Typography, { children: "JBrowse is a GMOD project \u00A9 2019-2026, The Evolutionary Software Foundation" }), _jsx(Typography, { children: "Here are some resources and documentation. Please report the version number above when asking questions. Thanks!" }), _jsxs("ul", { children: [_jsx("li", { children: _jsx(ExternalLink, { href: "https://github.com/GMOD/jbrowse-components/discussions", children: "Question & answer forum" }) }), _jsx("li", { children: _jsx(ExternalLink, { href: "https://github.com/GMOD/jbrowse-components/issues/new/choose", children: "Report a bug" }) }), _jsx("li", { children: _jsx(ExternalLink, { href: "https://jbrowse.org/jb2/docs/user_guide", children: "User guide" }) }), _jsx("li", { children: _jsx(ExternalLink, { href: "https://jbrowse.org/jb2/docs/", children: "Documentation" }) })] })] }) }));
-}

package/esm/ui/ViewTitle.d.ts

@@ -1,5 +0,0 @@
-import type { IBaseViewModel } from '@jbrowse/core/pluggableElementTypes/models/BaseViewModel';
-declare const ViewTitle: ({ view, }: {
-    view: IBaseViewModel;
-}) => import("react").JSX.Element;
-export default ViewTitle;

package/esm/ui/ViewTitle.js

@@ -1,65 +0,0 @@
-import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
-import { Suspense, lazy, useRef, useState } from 'react';
-import { CascadingMenuButton, Logomark, VIEW_HEADER_HEIGHT, } from '@jbrowse/core/ui';
-import { getSession } from '@jbrowse/core/util';
-import { VIEW_HEADER_HEIGHT_VAR, useChromeHeightVar, } from '@jbrowse/core/util/hooks';
-import { makeStyles } from '@jbrowse/core/util/tss-react';
-import MenuIcon from '@mui/icons-material/Menu';
-import { IconButton, Typography, alpha } from '@mui/material';
-import { observer } from 'mobx-react';
-const VersionAboutDialog = lazy(() => import('./VersionAboutDialog.js'));
-const useStyles = makeStyles()(theme => ({
-    icon: {
-        color: theme.palette.secondary.contrastText,
-    },
-    displayName: {
-        marginTop: 2,
-        color: theme.palette.secondary.contrastText,
-    },
-    grow: {
-        flexGrow: 1,
-    },
-    container: {
-        display: 'flex',
-        alignItems: 'center',
-        // A fixed height, unlike the web app's view header, which is a floor. Both
-        // publish what they measure through `useChromeHeightVar`, so what sticks
-        // below follows either — this is a density choice and no longer a
-        // load-bearing constant. It stays fixed because the content that would
-        // widen the box is the logomark button, whose 22px icon and 5px padding
-        // want 32: a floor here spends 4px of an embedder's box to stop that button
-        // painting 2px outside a bar nothing clips.
-        height: VIEW_HEADER_HEIGHT,
-        top: 0,
-        zIndex: 900,
-        // a sticky element does not carry its parent's background, and what would
-        // otherwise show through is the tracks scrolling underneath
-        background: theme.palette.secondary.main,
-    },
-    iconRoot: {
-        '&:hover': {
-            backgroundColor: alpha(theme.palette.secondary.contrastText, theme.palette.action.hoverOpacity),
-            '@media (hover: none)': {
-                backgroundColor: 'transparent',
-            },
-        },
-    },
-}));
-const ViewTitle = observer(function ViewTitle({ view, }) {
-    const { classes } = useStyles();
-    const { displayName } = view;
-    const [dialogOpen, setDialogOpen] = useState(false);
-    const session = getSession(view);
-    // `=== true` because the member is optional on AbstractSessionModel: a
-    // session with no such notion reads as "don't pin", which is what the LGV
-    // model's own getter does with it too
-    const stickyViewHeaders = session.stickyViewHeaders === true;
-    const ref = useRef(null);
-    useChromeHeightVar(ref, VIEW_HEADER_HEIGHT_VAR);
-    return (_jsxs("div", { ref: ref, className: classes.container, style: { position: stickyViewHeaders ? 'sticky' : undefined }, children: [_jsx(CascadingMenuButton, { menuItems: () => view.menuItems(), "data-testid": "view_menu_icon", classes: { root: classes.iconRoot }, edge: "start", children: _jsx(MenuIcon, { className: classes.icon }) }), _jsx("div", { className: classes.grow }), displayName ? (_jsx(Typography, { variant: "body2", className: classes.displayName, children: displayName })) : null, _jsx("div", { className: classes.grow }), _jsx(IconButton, { onClick: () => {
-                    setDialogOpen(true);
-                }, children: _jsx("div", { style: { width: 22, height: 22 }, children: _jsx(Logomark, { variant: "white" }) }) }), dialogOpen ? (_jsx(Suspense, { fallback: null, children: _jsx(VersionAboutDialog, { open: true, onClose: () => {
-                        setDialogOpen(false);
-                    }, version: session.version }) })) : null] }));
-});
-export default ViewTitle;