@jbrowse/embedded-core 2.6.1

package/LICENSE

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package/dist/index.d.ts

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+export { default as ModalWidget } from './ui/ModalWidget';
+export { default as EmbeddedViewContainer } from './ui/EmbeddedViewContainer';

package/dist/index.js

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+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.EmbeddedViewContainer = exports.ModalWidget = void 0;
+var ModalWidget_1 = require("./ui/ModalWidget");
+Object.defineProperty(exports, "ModalWidget", { enumerable: true, get: function () { return __importDefault(ModalWidget_1).default; } });
+var EmbeddedViewContainer_1 = require("./ui/EmbeddedViewContainer");
+Object.defineProperty(exports, "EmbeddedViewContainer", { enumerable: true, get: function () { return __importDefault(EmbeddedViewContainer_1).default; } });

package/dist/ui/EmbeddedViewContainer.d.ts

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+import React from 'react';
+import { IBaseViewModel } from '@jbrowse/core/pluggableElementTypes/models/BaseViewModel';
+declare const ViewContainerWrapper: ({ view, children, }: {
+    view: IBaseViewModel;
+    children: React.ReactNode;
+}) => React.JSX.Element;
+export default ViewContainerWrapper;

package/dist/ui/EmbeddedViewContainer.js

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+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const react_1 = __importStar(require("react"));
+const material_1 = require("@mui/material");
+const mui_1 = require("tss-react/mui");
+const mobx_react_1 = require("mobx-react");
+const util_1 = require("@jbrowse/core/util");
+const ViewTitle_1 = __importDefault(require("./ViewTitle"));
+const useStyles = (0, mui_1.makeStyles)()(theme => ({
+    // avoid parent styles getting into this div
+    // https://css-tricks.com/almanac/properties/a/all/
+    avoidParentStyle: {
+        all: 'initial',
+    },
+    viewContainer: {
+        overflow: 'hidden',
+        background: theme.palette.secondary.main,
+        margin: theme.spacing(0.5),
+        padding: `0 ${theme.spacing(1)} ${theme.spacing(1)}`,
+    },
+}));
+const ViewContainer = (0, mobx_react_1.observer)(function ({ view, children, }) {
+    const { classes } = useStyles();
+    const session = (0, util_1.getSession)(view);
+    const theme = (0, material_1.useTheme)();
+    const ref = (0, util_1.useWidthSetter)(view, theme.spacing(1));
+    return (react_1.default.createElement(material_1.Paper, { elevation: 12, ref: ref, className: classes.viewContainer },
+        session.DialogComponent ? (react_1.default.createElement(react_1.Suspense, { fallback: react_1.default.createElement("div", null) },
+            react_1.default.createElement(session.DialogComponent, { ...session.DialogProps }))) : null,
+        react_1.default.createElement(ViewTitle_1.default, { view: view }),
+        react_1.default.createElement(material_1.Paper, null, children)));
+});
+const ViewContainerWrapper = (0, mobx_react_1.observer)(function ({ view, children, }) {
+    const { classes } = useStyles();
+    return (react_1.default.createElement("div", { className: classes.avoidParentStyle },
+        react_1.default.createElement(material_1.ScopedCssBaseline, null,
+            react_1.default.createElement(ViewContainer, { view: view }, children))));
+});
+exports.default = ViewContainerWrapper;

package/dist/ui/ModalWidget.d.ts

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+import React from 'react';
+import { SessionWithWidgets } from '@jbrowse/core/util';
+declare const _default: ({ session, }: {
+    session: SessionWithWidgets;
+}) => React.JSX.Element | null;
+export default _default;

package/dist/ui/ModalWidget.js

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+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const react_1 = __importStar(require("react"));
+const material_1 = require("@mui/material");
+const ui_1 = require("@jbrowse/core/ui");
+const mui_1 = require("tss-react/mui");
+const mobx_react_1 = require("mobx-react");
+const mobx_state_tree_1 = require("mobx-state-tree");
+const useStyles = (0, mui_1.makeStyles)()({
+    paper: {
+        overflow: 'auto',
+    },
+});
+exports.default = (0, mobx_react_1.observer)(function ({ session, }) {
+    const { classes } = useStyles();
+    const { visibleWidget } = session;
+    const { pluginManager } = (0, mobx_state_tree_1.getEnv)(session);
+    if (!visibleWidget) {
+        return null;
+    }
+    const { ReactComponent, HeadingComponent, heading } = pluginManager.getWidgetType(visibleWidget.type);
+    const Component = visibleWidget
+        ? pluginManager.evaluateExtensionPoint('Core-replaceWidget', ReactComponent, {
+            session,
+            model: visibleWidget,
+        })
+        : null;
+    return (react_1.default.createElement(ui_1.Dialog, { open: true, onClose: () => session.hideAllWidgets(), maxWidth: "xl", header: react_1.default.createElement(material_1.AppBar, { position: "static" },
+            react_1.default.createElement(material_1.Toolbar, null, HeadingComponent ? (react_1.default.createElement(HeadingComponent, { model: visibleWidget })) : (react_1.default.createElement(material_1.Typography, { variant: "h6" }, heading)))) }, Component ? (react_1.default.createElement(react_1.Suspense, { fallback: react_1.default.createElement("div", null, "Loading...") },
+        react_1.default.createElement(material_1.Paper, { className: classes.paper },
+            react_1.default.createElement(Component, { model: visibleWidget, session: session, overrideDimensions: {
+                    height: (window.innerHeight * 5) / 8,
+                    width: 800,
+                } })))) : null));
+});

package/dist/ui/VersionAboutDialog.d.ts

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+import React from 'react';
+export default function AboutDialog({ open, version, onClose, }: {
+    open: boolean;
+    version: string;
+    onClose: () => void;
+}): React.JSX.Element;

package/dist/ui/VersionAboutDialog.js

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+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const react_1 = __importDefault(require("react"));
+const material_1 = require("@mui/material");
+const ui_1 = require("@jbrowse/core/ui");
+const mui_1 = require("tss-react/mui");
+const useStyles = (0, mui_1.makeStyles)()({
+    content: {
+        minWidth: 800,
+    },
+});
+function AboutDialog({ open, version, onClose, }) {
+    const { classes } = useStyles();
+    return (react_1.default.createElement(ui_1.Dialog, { open: open, onClose: onClose, maxWidth: "xl", title: `JBrowse v${version}` },
+        react_1.default.createElement(material_1.DialogContent, { className: classes.content },
+            react_1.default.createElement(material_1.Typography, null, "JBrowse is a GMOD project \u00A9 2019-2021, The Evolutionary Software Foundation"),
+            react_1.default.createElement(material_1.Typography, null, "Here are some resources and documentation. Please report the version number above when asking questions. Thanks!"),
+            react_1.default.createElement("ul", null,
+                react_1.default.createElement("li", null,
+                    react_1.default.createElement(material_1.Link, { href: "https://github.com/GMOD/jbrowse-components/discussions", target: "_blank", rel: "noopener noreferrer" }, "Question & answer forum")),
+                react_1.default.createElement("li", null,
+                    react_1.default.createElement(material_1.Link, { href: "https://github.com/GMOD/jbrowse-components/issues/new/choose", target: "_blank", rel: "noopener noreferrer" }, "Report a bug")),
+                react_1.default.createElement("li", null,
+                    react_1.default.createElement(material_1.Link, { href: "https://jbrowse.org/jb2/docs/user_guide", target: "_blank", rel: "noopener noreferrer" }, "User guide")),
+                react_1.default.createElement("li", null,
+                    react_1.default.createElement(material_1.Link, { href: "https://jbrowse.org/jb2/docs/", target: "_blank", rel: "noopener noreferrer" }, "Documentation"))))));
+}
+exports.default = AboutDialog;

package/dist/ui/ViewMenu.d.ts

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+import React from 'react';
+import { IconButtonProps as IconButtonPropsType, SvgIconProps } from '@mui/material';
+import { IBaseViewModel } from '@jbrowse/core/pluggableElementTypes/models/BaseViewModel';
+declare const ViewMenu: ({ model, IconButtonProps, IconProps, }: {
+    model: IBaseViewModel;
+    IconButtonProps: IconButtonPropsType;
+    IconProps: SvgIconProps;
+}) => React.JSX.Element | null;
+export default ViewMenu;

package/dist/ui/ViewMenu.js

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+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const react_1 = __importDefault(require("react"));
+const CascadingMenuButton_1 = __importDefault(require("@jbrowse/core/ui/CascadingMenuButton"));
+const mobx_react_1 = require("mobx-react");
+// icons
+const Menu_1 = __importDefault(require("@mui/icons-material/Menu"));
+const ViewMenu = (0, mobx_react_1.observer)(function ({ model, IconButtonProps, IconProps, }) {
+    const items = model.menuItems();
+    return items.length ? (react_1.default.createElement(CascadingMenuButton_1.default, { menuItems: items, "data-testid": "view_menu_icon" },
+        react_1.default.createElement(Menu_1.default, { ...IconProps }))) : null;
+});
+exports.default = ViewMenu;

package/dist/ui/ViewTitle.d.ts

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+import React from 'react';
+import { IBaseViewModel } from '@jbrowse/core/pluggableElementTypes/models/BaseViewModel';
+declare const _default: ({ view }: {
+    view: IBaseViewModel;
+}) => React.JSX.Element;
+export default _default;

package/dist/ui/ViewTitle.js

@@ -0,0 +1,76 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const react_1 = __importStar(require("react"));
+const material_1 = require("@mui/material");
+const mobx_react_1 = require("mobx-react");
+const ui_1 = require("@jbrowse/core/ui");
+const mui_1 = require("tss-react/mui");
+const util_1 = require("@jbrowse/core/util");
+// locals
+const ViewMenu_1 = __importDefault(require("./ViewMenu"));
+const VersionAboutDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./VersionAboutDialog'))));
+const useStyles = (0, mui_1.makeStyles)()(theme => ({
+    icon: {
+        color: theme.palette.secondary.contrastText,
+    },
+    displayName: {
+        marginTop: 2,
+        color: theme.palette.secondary.contrastText,
+    },
+    grow: {
+        flexGrow: 1,
+    },
+    iconRoot: {
+        '&:hover': {
+            backgroundColor: (0, material_1.alpha)(theme.palette.secondary.contrastText, theme.palette.action.hoverOpacity),
+            '@media (hover: none)': {
+                backgroundColor: 'transparent',
+            },
+        },
+    },
+}));
+exports.default = (0, mobx_react_1.observer)(({ view }) => {
+    const { classes } = useStyles();
+    const { displayName } = view;
+    const [dlgOpen, setDlgOpen] = (0, react_1.useState)(false);
+    const session = (0, util_1.getSession)(view);
+    return (react_1.default.createElement("div", { style: { display: 'flex' } },
+        react_1.default.createElement(ViewMenu_1.default, { model: view, IconButtonProps: {
+                classes: { root: classes.iconRoot },
+                edge: 'start',
+            }, IconProps: { className: classes.icon } }),
+        react_1.default.createElement("div", { className: classes.grow }),
+        displayName ? (react_1.default.createElement(material_1.Typography, { variant: "body2", className: classes.displayName }, displayName)) : null,
+        react_1.default.createElement("div", { className: classes.grow }),
+        react_1.default.createElement(material_1.IconButton, { onClick: () => setDlgOpen(true) },
+            react_1.default.createElement("div", { style: { width: 22, height: 22 } },
+                react_1.default.createElement(ui_1.Logomark, { variant: "white" }))),
+        dlgOpen ? (react_1.default.createElement(react_1.Suspense, { fallback: react_1.default.createElement("div", null) },
+            react_1.default.createElement(VersionAboutDialog, { open: true, onClose: () => setDlgOpen(false), version: session.version }))) : null));
+});

package/esm/index.d.ts

@@ -0,0 +1,2 @@
+export { default as ModalWidget } from './ui/ModalWidget';
+export { default as EmbeddedViewContainer } from './ui/EmbeddedViewContainer';

package/esm/index.js

@@ -0,0 +1,2 @@
+export { default as ModalWidget } from './ui/ModalWidget';
+export { default as EmbeddedViewContainer } from './ui/EmbeddedViewContainer';

package/esm/ui/EmbeddedViewContainer.d.ts

@@ -0,0 +1,7 @@
+import React from 'react';
+import { IBaseViewModel } from '@jbrowse/core/pluggableElementTypes/models/BaseViewModel';
+declare const ViewContainerWrapper: ({ view, children, }: {
+    view: IBaseViewModel;
+    children: React.ReactNode;
+}) => React.JSX.Element;
+export default ViewContainerWrapper;

package/esm/ui/EmbeddedViewContainer.js

@@ -0,0 +1,37 @@
+import React, { Suspense } from 'react';
+import { Paper, ScopedCssBaseline, useTheme } from '@mui/material';
+import { makeStyles } from 'tss-react/mui';
+import { observer } from 'mobx-react';
+import { getSession, useWidthSetter } from '@jbrowse/core/util';
+import ViewTitle from './ViewTitle';
+const useStyles = makeStyles()(theme => ({
+    // avoid parent styles getting into this div
+    // https://css-tricks.com/almanac/properties/a/all/
+    avoidParentStyle: {
+        all: 'initial',
+    },
+    viewContainer: {
+        overflow: 'hidden',
+        background: theme.palette.secondary.main,
+        margin: theme.spacing(0.5),
+        padding: `0 ${theme.spacing(1)} ${theme.spacing(1)}`,
+    },
+}));
+const ViewContainer = observer(function ({ view, children, }) {
+    const { classes } = useStyles();
+    const session = getSession(view);
+    const theme = useTheme();
+    const ref = useWidthSetter(view, theme.spacing(1));
+    return (React.createElement(Paper, { elevation: 12, ref: ref, className: classes.viewContainer },
+        session.DialogComponent ? (React.createElement(Suspense, { fallback: React.createElement("div", null) },
+            React.createElement(session.DialogComponent, { ...session.DialogProps }))) : null,
+        React.createElement(ViewTitle, { view: view }),
+        React.createElement(Paper, null, children)));
+});
+const ViewContainerWrapper = observer(function ({ view, children, }) {
+    const { classes } = useStyles();
+    return (React.createElement("div", { className: classes.avoidParentStyle },
+        React.createElement(ScopedCssBaseline, null,
+            React.createElement(ViewContainer, { view: view }, children))));
+});
+export default ViewContainerWrapper;

package/esm/ui/ModalWidget.d.ts

@@ -0,0 +1,6 @@
+import React from 'react';
+import { SessionWithWidgets } from '@jbrowse/core/util';
+declare const _default: ({ session, }: {
+    session: SessionWithWidgets;
+}) => React.JSX.Element | null;
+export default _default;

package/esm/ui/ModalWidget.js

@@ -0,0 +1,33 @@
+import React, { Suspense } from 'react';
+import { AppBar, Paper, Toolbar, Typography } from '@mui/material';
+import { Dialog } from '@jbrowse/core/ui';
+import { makeStyles } from 'tss-react/mui';
+import { observer } from 'mobx-react';
+import { getEnv } from 'mobx-state-tree';
+const useStyles = makeStyles()({
+    paper: {
+        overflow: 'auto',
+    },
+});
+export default observer(function ({ session, }) {
+    const { classes } = useStyles();
+    const { visibleWidget } = session;
+    const { pluginManager } = getEnv(session);
+    if (!visibleWidget) {
+        return null;
+    }
+    const { ReactComponent, HeadingComponent, heading } = pluginManager.getWidgetType(visibleWidget.type);
+    const Component = visibleWidget
+        ? pluginManager.evaluateExtensionPoint('Core-replaceWidget', ReactComponent, {
+            session,
+            model: visibleWidget,
+        })
+        : null;
+    return (React.createElement(Dialog, { open: true, onClose: () => session.hideAllWidgets(), maxWidth: "xl", header: React.createElement(AppBar, { position: "static" },
+            React.createElement(Toolbar, null, HeadingComponent ? (React.createElement(HeadingComponent, { model: visibleWidget })) : (React.createElement(Typography, { variant: "h6" }, heading)))) }, Component ? (React.createElement(Suspense, { fallback: React.createElement("div", null, "Loading...") },
+        React.createElement(Paper, { className: classes.paper },
+            React.createElement(Component, { model: visibleWidget, session: session, overrideDimensions: {
+                    height: (window.innerHeight * 5) / 8,
+                    width: 800,
+                } })))) : null));
+});

package/esm/ui/VersionAboutDialog.d.ts

@@ -0,0 +1,6 @@
+import React from 'react';
+export default function AboutDialog({ open, version, onClose, }: {
+    open: boolean;
+    version: string;
+    onClose: () => void;
+}): React.JSX.Element;

package/esm/ui/VersionAboutDialog.js

@@ -0,0 +1,25 @@
+import React from 'react';
+import { DialogContent, Link, Typography } from '@mui/material';
+import { Dialog } from '@jbrowse/core/ui';
+import { makeStyles } from 'tss-react/mui';
+const useStyles = makeStyles()({
+    content: {
+        minWidth: 800,
+    },
+});
+export default function AboutDialog({ open, version, onClose, }) {
+    const { classes } = useStyles();
+    return (React.createElement(Dialog, { open: open, onClose: onClose, maxWidth: "xl", title: `JBrowse v${version}` },
+        React.createElement(DialogContent, { className: classes.content },
+            React.createElement(Typography, null, "JBrowse is a GMOD project \u00A9 2019-2021, The Evolutionary Software Foundation"),
+            React.createElement(Typography, null, "Here are some resources and documentation. Please report the version number above when asking questions. Thanks!"),
+            React.createElement("ul", null,
+                React.createElement("li", null,
+                    React.createElement(Link, { href: "https://github.com/GMOD/jbrowse-components/discussions", target: "_blank", rel: "noopener noreferrer" }, "Question & answer forum")),
+                React.createElement("li", null,
+                    React.createElement(Link, { href: "https://github.com/GMOD/jbrowse-components/issues/new/choose", target: "_blank", rel: "noopener noreferrer" }, "Report a bug")),
+                React.createElement("li", null,
+                    React.createElement(Link, { href: "https://jbrowse.org/jb2/docs/user_guide", target: "_blank", rel: "noopener noreferrer" }, "User guide")),
+                React.createElement("li", null,
+                    React.createElement(Link, { href: "https://jbrowse.org/jb2/docs/", target: "_blank", rel: "noopener noreferrer" }, "Documentation"))))));
+}

package/esm/ui/ViewMenu.d.ts

@@ -0,0 +1,9 @@
+import React from 'react';
+import { IconButtonProps as IconButtonPropsType, SvgIconProps } from '@mui/material';
+import { IBaseViewModel } from '@jbrowse/core/pluggableElementTypes/models/BaseViewModel';
+declare const ViewMenu: ({ model, IconButtonProps, IconProps, }: {
+    model: IBaseViewModel;
+    IconButtonProps: IconButtonPropsType;
+    IconProps: SvgIconProps;
+}) => React.JSX.Element | null;
+export default ViewMenu;

package/esm/ui/ViewMenu.js

@@ -0,0 +1,11 @@
+import React from 'react';
+import CascadingMenuButton from '@jbrowse/core/ui/CascadingMenuButton';
+import { observer } from 'mobx-react';
+// icons
+import MenuIcon from '@mui/icons-material/Menu';
+const ViewMenu = observer(function ({ model, IconButtonProps, IconProps, }) {
+    const items = model.menuItems();
+    return items.length ? (React.createElement(CascadingMenuButton, { menuItems: items, "data-testid": "view_menu_icon" },
+        React.createElement(MenuIcon, { ...IconProps }))) : null;
+});
+export default ViewMenu;

package/esm/ui/ViewTitle.d.ts

@@ -0,0 +1,6 @@
+import React from 'react';
+import { IBaseViewModel } from '@jbrowse/core/pluggableElementTypes/models/BaseViewModel';
+declare const _default: ({ view }: {
+    view: IBaseViewModel;
+}) => React.JSX.Element;
+export default _default;

package/esm/ui/ViewTitle.js

@@ -0,0 +1,48 @@
+import React, { Suspense, lazy, useState } from 'react';
+import { IconButton, Typography, alpha } from '@mui/material';
+import { observer } from 'mobx-react';
+import { Logomark } from '@jbrowse/core/ui';
+import { makeStyles } from 'tss-react/mui';
+import { getSession } from '@jbrowse/core/util';
+// locals
+import ViewMenu from './ViewMenu';
+const VersionAboutDialog = lazy(() => import('./VersionAboutDialog'));
+const useStyles = makeStyles()(theme => ({
+    icon: {
+        color: theme.palette.secondary.contrastText,
+    },
+    displayName: {
+        marginTop: 2,
+        color: theme.palette.secondary.contrastText,
+    },
+    grow: {
+        flexGrow: 1,
+    },
+    iconRoot: {
+        '&:hover': {
+            backgroundColor: alpha(theme.palette.secondary.contrastText, theme.palette.action.hoverOpacity),
+            '@media (hover: none)': {
+                backgroundColor: 'transparent',
+            },
+        },
+    },
+}));
+export default observer(({ view }) => {
+    const { classes } = useStyles();
+    const { displayName } = view;
+    const [dlgOpen, setDlgOpen] = useState(false);
+    const session = getSession(view);
+    return (React.createElement("div", { style: { display: 'flex' } },
+        React.createElement(ViewMenu, { model: view, IconButtonProps: {
+                classes: { root: classes.iconRoot },
+                edge: 'start',
+            }, IconProps: { className: classes.icon } }),
+        React.createElement("div", { className: classes.grow }),
+        displayName ? (React.createElement(Typography, { variant: "body2", className: classes.displayName }, displayName)) : null,
+        React.createElement("div", { className: classes.grow }),
+        React.createElement(IconButton, { onClick: () => setDlgOpen(true) },
+            React.createElement("div", { style: { width: 22, height: 22 } },
+                React.createElement(Logomark, { variant: "white" }))),
+        dlgOpen ? (React.createElement(Suspense, { fallback: React.createElement("div", null) },
+            React.createElement(VersionAboutDialog, { open: true, onClose: () => setDlgOpen(false), version: session.version }))) : null));
+});

package/package.json

@@ -0,0 +1,66 @@
+{
+  "name": "@jbrowse/embedded-core",
+  "version": "2.6.1",
+  "description": "JBrowse 2 code shared between embedded products",
+  "keywords": [
+    "jbrowse",
+    "jbrowse2",
+    "bionode",
+    "biojs",
+    "genomics"
+  ],
+  "license": "Apache-2.0",
+  "homepage": "https://jbrowse.org",
+  "bugs": "https://github.com/GMOD/jbrowse-components/issues",
+  "repository": {
+    "type": "git",
+    "url": "https://github.com/GMOD/jbrowse-components.git",
+    "directory": "packages/embedded-core"
+  },
+  "author": "JBrowse Team",
+  "distMain": "dist/index.js",
+  "distModule": "esm/index.js",
+  "srcMain": "src/index.ts",
+  "srcModule": "src/index.ts",
+  "main": "dist/index.js",
+  "module": "esm/index.js",
+  "files": [
+    "dist",
+    "esm",
+    "src"
+  ],
+  "scripts": {
+    "build:esm": "tsc --build tsconfig.build.esm.json",
+    "build:es5": "tsc --build tsconfig.build.es5.json",
+    "build": "npm run build:esm && npm run build:es5",
+    "test": "cd ../..; jest packages/embedded-core",
+    "clean": "rimraf dist esm *.tsbuildinfo",
+    "prebuild": "yarn clean",
+    "prepack": "yarn build && yarn useDist",
+    "postpack": "yarn useSrc",
+    "useDist": "node ../../scripts/useDist.js",
+    "useSrc": "node ../../scripts/useSrc.js"
+  },
+  "dependencies": {
+    "@babel/runtime": "^7.16.3",
+    "@jbrowse/product-core": "^2.6.1",
+    "@mui/icons-material": "^5.0.0",
+    "@mui/material": "^5.10.17",
+    "copy-to-clipboard": "^3.3.1",
+    "react-error-boundary": "^4.0.3",
+    "shortid": "^2.2.15"
+  },
+  "peerDependencies": {
+    "mobx": "^6.0.0",
+    "mobx-react": "^7.0.0",
+    "mobx-state-tree": "^5.0.0",
+    "react": "^17.0.0",
+    "react-dom": "^17.0.0",
+    "rxjs": "^7.0.0",
+    "tss-react": "^4.0.0"
+  },
+  "publishConfig": {
+    "access": "public"
+  },
+  "gitHead": "1cbe7ba097fb2d2763c776e5e429e4670cdd583c"
+}

package/src/index.ts

@@ -0,0 +1,2 @@
+export { default as ModalWidget } from './ui/ModalWidget'
+export { default as EmbeddedViewContainer } from './ui/EmbeddedViewContainer'

package/src/ui/EmbeddedViewContainer.tsx

@@ -0,0 +1,64 @@
+import React, { Suspense } from 'react'
+import { Paper, ScopedCssBaseline, useTheme } from '@mui/material'
+import { makeStyles } from 'tss-react/mui'
+import { observer } from 'mobx-react'
+import { IBaseViewModel } from '@jbrowse/core/pluggableElementTypes/models/BaseViewModel'
+import { getSession, useWidthSetter } from '@jbrowse/core/util'
+import ViewTitle from './ViewTitle'
+
+const useStyles = makeStyles()(theme => ({
+  // avoid parent styles getting into this div
+  // https://css-tricks.com/almanac/properties/a/all/
+  avoidParentStyle: {
+    all: 'initial',
+  },
+  viewContainer: {
+    overflow: 'hidden',
+    background: theme.palette.secondary.main,
+    margin: theme.spacing(0.5),
+    padding: `0 ${theme.spacing(1)} ${theme.spacing(1)}`,
+  },
+}))
+
+const ViewContainer = observer(function ({
+  view,
+  children,
+}: {
+  view: IBaseViewModel
+  children: React.ReactNode
+}) {
+  const { classes } = useStyles()
+  const session = getSession(view)
+  const theme = useTheme()
+  const ref = useWidthSetter(view, theme.spacing(1))
+
+  return (
+    <Paper elevation={12} ref={ref} className={classes.viewContainer}>
+      {session.DialogComponent ? (
+        <Suspense fallback={<div />}>
+          <session.DialogComponent {...session.DialogProps} />
+        </Suspense>
+      ) : null}
+      <ViewTitle view={view} />
+      <Paper>{children}</Paper>
+    </Paper>
+  )
+})
+
+const ViewContainerWrapper = observer(function ({
+  view,
+  children,
+}: {
+  view: IBaseViewModel
+  children: React.ReactNode
+}) {
+  const { classes } = useStyles()
+  return (
+    <div className={classes.avoidParentStyle}>
+      <ScopedCssBaseline>
+        <ViewContainer view={view}>{children}</ViewContainer>
+      </ScopedCssBaseline>
+    </div>
+  )
+})
+export default ViewContainerWrapper

package/src/ui/ModalWidget.tsx

@@ -0,0 +1,74 @@
+import React, { Suspense } from 'react'
+import { AppBar, Paper, Toolbar, Typography } from '@mui/material'
+import { Dialog } from '@jbrowse/core/ui'
+import { makeStyles } from 'tss-react/mui'
+import { observer } from 'mobx-react'
+import { getEnv } from 'mobx-state-tree'
+import { SessionWithWidgets } from '@jbrowse/core/util'
+
+const useStyles = makeStyles()({
+  paper: {
+    overflow: 'auto',
+  },
+})
+
+export default observer(function ({
+  session,
+}: {
+  session: SessionWithWidgets
+}) {
+  const { classes } = useStyles()
+  const { visibleWidget } = session
+  const { pluginManager } = getEnv(session)
+
+  if (!visibleWidget) {
+    return null
+  }
+  const { ReactComponent, HeadingComponent, heading } =
+    pluginManager.getWidgetType(visibleWidget.type)
+
+  const Component = visibleWidget
+    ? (pluginManager.evaluateExtensionPoint(
+        'Core-replaceWidget',
+        ReactComponent,
+        {
+          session,
+          model: visibleWidget,
+        },
+        // eslint-disable-next-line @typescript-eslint/no-explicit-any
+      ) as React.FC<any>)
+    : null
+  return (
+    <Dialog
+      open
+      onClose={() => session.hideAllWidgets()}
+      maxWidth="xl"
+      header={
+        <AppBar position="static">
+          <Toolbar>
+            {HeadingComponent ? (
+              <HeadingComponent model={visibleWidget} />
+            ) : (
+              <Typography variant="h6">{heading}</Typography>
+            )}
+          </Toolbar>
+        </AppBar>
+      }
+    >
+      {Component ? (
+        <Suspense fallback={<div>Loading...</div>}>
+          <Paper className={classes.paper}>
+            <Component
+              model={visibleWidget}
+              session={session}
+              overrideDimensions={{
+                height: (window.innerHeight * 5) / 8,
+                width: 800,
+              }}
+            />
+          </Paper>
+        </Suspense>
+      ) : null}
+    </Dialog>
+  )
+})

package/src/ui/VersionAboutDialog.tsx

@@ -0,0 +1,79 @@
+import React from 'react'
+import { DialogContent, Link, Typography } from '@mui/material'
+import { Dialog } from '@jbrowse/core/ui'
+import { makeStyles } from 'tss-react/mui'
+
+const useStyles = makeStyles()({
+  content: {
+    minWidth: 800,
+  },
+})
+
+export default function AboutDialog({
+  open,
+  version,
+  onClose,
+}: {
+  open: boolean
+  version: string
+  onClose: () => void
+}) {
+  const { classes } = useStyles()
+  return (
+    <Dialog
+      open={open}
+      onClose={onClose}
+      maxWidth="xl"
+      title={`JBrowse v${version}`}
+    >
+      <DialogContent className={classes.content}>
+        <Typography>
+          JBrowse is a GMOD project © 2019-2021, The Evolutionary Software
+          Foundation
+        </Typography>
+        <Typography>
+          Here are some resources and documentation. Please report the version
+          number above when asking questions. Thanks!
+        </Typography>
+        <ul>
+          <li>
+            <Link
+              href="https://github.com/GMOD/jbrowse-components/discussions"
+              target="_blank"
+              rel="noopener noreferrer"
+            >
+              Question & answer forum
+            </Link>
+          </li>
+          <li>
+            <Link
+              href="https://github.com/GMOD/jbrowse-components/issues/new/choose"
+              target="_blank"
+              rel="noopener noreferrer"
+            >
+              Report a bug
+            </Link>
+          </li>
+          <li>
+            <Link
+              href="https://jbrowse.org/jb2/docs/user_guide"
+              target="_blank"
+              rel="noopener noreferrer"
+            >
+              User guide
+            </Link>
+          </li>
+          <li>
+            <Link
+              href="https://jbrowse.org/jb2/docs/"
+              target="_blank"
+              rel="noopener noreferrer"
+            >
+              Documentation
+            </Link>
+          </li>
+        </ul>
+      </DialogContent>
+    </Dialog>
+  )
+}

package/src/ui/ViewMenu.tsx

@@ -0,0 +1,30 @@
+import React from 'react'
+import {
+  IconButtonProps as IconButtonPropsType,
+  SvgIconProps,
+} from '@mui/material'
+import CascadingMenuButton from '@jbrowse/core/ui/CascadingMenuButton'
+import { observer } from 'mobx-react'
+import { IBaseViewModel } from '@jbrowse/core/pluggableElementTypes/models/BaseViewModel'
+
+// icons
+import MenuIcon from '@mui/icons-material/Menu'
+
+const ViewMenu = observer(function ({
+  model,
+  IconButtonProps,
+  IconProps,
+}: {
+  model: IBaseViewModel
+  IconButtonProps: IconButtonPropsType
+  IconProps: SvgIconProps
+}) {
+  const items = model.menuItems()
+  return items.length ? (
+    <CascadingMenuButton menuItems={items} data-testid="view_menu_icon">
+      <MenuIcon {...IconProps} />
+    </CascadingMenuButton>
+  ) : null
+})
+
+export default ViewMenu

package/src/ui/ViewTitle.tsx

@@ -0,0 +1,76 @@
+import React, { Suspense, lazy, useState } from 'react'
+import { IconButton, Typography, alpha } from '@mui/material'
+import { observer } from 'mobx-react'
+import { IBaseViewModel } from '@jbrowse/core/pluggableElementTypes/models/BaseViewModel'
+import { Logomark } from '@jbrowse/core/ui'
+import { makeStyles } from 'tss-react/mui'
+import { getSession } from '@jbrowse/core/util'
+
+// locals
+import ViewMenu from './ViewMenu'
+
+const VersionAboutDialog = lazy(() => import('./VersionAboutDialog'))
+
+const useStyles = makeStyles()(theme => ({
+  icon: {
+    color: theme.palette.secondary.contrastText,
+  },
+  displayName: {
+    marginTop: 2,
+    color: theme.palette.secondary.contrastText,
+  },
+  grow: {
+    flexGrow: 1,
+  },
+  iconRoot: {
+    '&:hover': {
+      backgroundColor: alpha(
+        theme.palette.secondary.contrastText,
+        theme.palette.action.hoverOpacity,
+      ),
+      '@media (hover: none)': {
+        backgroundColor: 'transparent',
+      },
+    },
+  },
+}))
+
+export default observer(({ view }: { view: IBaseViewModel }) => {
+  const { classes } = useStyles()
+  const { displayName } = view
+  const [dlgOpen, setDlgOpen] = useState(false)
+  const session = getSession(view)
+  return (
+    <div style={{ display: 'flex' }}>
+      <ViewMenu
+        model={view}
+        IconButtonProps={{
+          classes: { root: classes.iconRoot },
+          edge: 'start',
+        }}
+        IconProps={{ className: classes.icon }}
+      />
+      <div className={classes.grow} />
+      {displayName ? (
+        <Typography variant="body2" className={classes.displayName}>
+          {displayName}
+        </Typography>
+      ) : null}
+      <div className={classes.grow} />
+      <IconButton onClick={() => setDlgOpen(true)}>
+        <div style={{ width: 22, height: 22 }}>
+          <Logomark variant="white" />
+        </div>
+      </IconButton>
+      {dlgOpen ? (
+        <Suspense fallback={<div />}>
+          <VersionAboutDialog
+            open
+            onClose={() => setDlgOpen(false)}
+            version={session.version}
+          />
+        </Suspense>
+      ) : null}
+    </div>
+  )
+})