@jbrowse/core 5.0.0-beta.11 → 5.0.0-beta.14

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (439) hide show
  1. package/README.md +450 -132
  2. package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.d.ts +3 -2
  3. package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +4 -2
  4. package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts +6 -2
  5. package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +18 -3
  6. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.d.ts +2 -1
  7. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.js +4 -2
  8. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.d.ts +2 -1
  9. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.js +4 -2
  10. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.d.ts +2 -1
  11. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.js +4 -2
  12. package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.d.ts +5 -4
  13. package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.js +6 -4
  14. package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.d.ts +2 -1
  15. package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.js +4 -2
  16. package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.d.ts +3 -2
  17. package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.js +4 -2
  18. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js +2 -2
  19. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.d.ts +3 -2
  20. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.js +4 -2
  21. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldActionsButton.d.ts +3 -2
  22. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldActionsButton.js +4 -2
  23. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.d.ts +3 -2
  24. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.js +4 -2
  25. package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.d.ts +3 -2
  26. package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.js +4 -2
  27. package/esm/BaseFeatureWidget/BaseFeatureDetail/ParentFeatureLine.d.ts +3 -2
  28. package/esm/BaseFeatureWidget/BaseFeatureDetail/ParentFeatureLine.js +4 -2
  29. package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.d.ts +3 -2
  30. package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +4 -2
  31. package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.d.ts +3 -2
  32. package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.js +4 -2
  33. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.d.ts +3 -2
  34. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.js +4 -2
  35. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.d.ts +3 -1
  36. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.js +15 -24
  37. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.js +1 -1
  38. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.d.ts +3 -2
  39. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.js +4 -2
  40. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.js +4 -4
  41. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.d.ts +3 -1
  42. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.js +2 -2
  43. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.d.ts +3 -2
  44. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.js +4 -2
  45. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.d.ts +1 -2
  46. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.js +2 -2
  47. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.d.ts +1 -2
  48. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.js +15 -36
  49. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.d.ts +3 -2
  50. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.js +4 -2
  51. package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.d.ts +4 -2
  52. package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.js +29 -20
  53. package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.d.ts +13 -1
  54. package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.js +28 -1
  55. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.js +3 -3
  56. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.js +2 -2
  57. package/esm/BaseFeatureWidget/stateModelFactory.d.ts +9 -0
  58. package/esm/BaseFeatureWidget/stateModelFactory.js +11 -0
  59. package/esm/BaseFeatureWidget/types.d.ts +2 -0
  60. package/esm/PluginManager.d.ts +7 -3
  61. package/esm/PluginManager.js +12 -3
  62. package/esm/ReExports/coreModules.generated.js +538 -518
  63. package/esm/ReExports/coreWorkerModules.generated.js +456 -438
  64. package/esm/ReExports/lazify.js +3 -2
  65. package/esm/ReExports/list.js +22 -6
  66. package/esm/ReExports/names.d.ts +1 -0
  67. package/esm/ReExports/names.generated.d.ts +2 -0
  68. package/esm/ReExports/names.generated.js +566 -0
  69. package/esm/ReExports/names.js +3 -0
  70. package/esm/TextSearch/TextSearchManager.d.ts +3 -3
  71. package/esm/TextSearch/TextSearchManager.js +6 -13
  72. package/esm/assemblyManager/assembly.d.ts +9 -0
  73. package/esm/assemblyManager/assembly.js +13 -0
  74. package/esm/assemblyManager/assemblyConfigSchema.d.ts +6 -1
  75. package/esm/assemblyManager/assemblyConfigSchema.js +23 -22
  76. package/esm/assemblyManager/assemblyManager.d.ts +11 -0
  77. package/esm/assemblyManager/assemblyManager.js +2 -0
  78. package/esm/assemblyManager/expandAssemblyConfigShorthand.d.ts +9 -0
  79. package/esm/assemblyManager/expandAssemblyConfigShorthand.js +23 -0
  80. package/esm/checkPlugins.js +10 -4
  81. package/esm/configuration/configurationSchema.d.ts +51 -100
  82. package/esm/configuration/configurationSchema.js +59 -225
  83. package/esm/configuration/configurationSchemaUnion.d.ts +2 -1
  84. package/esm/configuration/configurationSchemaUnion.js +2 -1
  85. package/esm/configuration/configurationSlot.d.ts +18 -64
  86. package/esm/configuration/configurationSlot.js +32 -98
  87. package/esm/configuration/fillLocations.d.ts +4 -2
  88. package/esm/configuration/fillLocations.js +9 -3
  89. package/esm/configuration/formatAboutConfigSchema.d.ts +2 -2
  90. package/esm/configuration/formatAboutConfigSchema.js +2 -2
  91. package/esm/configuration/formatDetailsConfigSchema.d.ts +2 -2
  92. package/esm/configuration/formatDetailsConfigSchema.js +7 -5
  93. package/esm/configuration/getConf.d.ts +7 -36
  94. package/esm/configuration/getConf.js +20 -41
  95. package/esm/configuration/index.d.ts +4 -3
  96. package/esm/configuration/index.js +3 -2
  97. package/esm/configuration/partitionAdvanced.d.ts +12 -0
  98. package/esm/configuration/partitionAdvanced.js +42 -0
  99. package/esm/configuration/plot.d.ts +6 -0
  100. package/esm/configuration/plot.js +56 -9
  101. package/esm/configuration/readConfObject.d.ts +15 -17
  102. package/esm/configuration/readConfObject.js +19 -50
  103. package/esm/configuration/schemaRegistry.d.ts +0 -2
  104. package/esm/configuration/schemaTypes.js +5 -1
  105. package/esm/configuration/slotFacade.js +2 -2
  106. package/esm/configuration/snapshotPreprocess.d.ts +42 -18
  107. package/esm/configuration/snapshotPreprocess.js +95 -37
  108. package/esm/configuration/tabixShorthand.js +1 -3
  109. package/esm/configuration/types.d.ts +60 -159
  110. package/esm/data_adapters/BaseAdapter/BaseAdapter.d.ts +7 -0
  111. package/esm/data_adapters/BaseAdapter/BaseAdapter.js +7 -0
  112. package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.d.ts +0 -22
  113. package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.js +0 -55
  114. package/esm/data_adapters/BaseAdapter/index.d.ts +0 -1
  115. package/esm/data_adapters/BaseAdapter/index.js +0 -1
  116. package/esm/data_adapters/BaseAdapter/rowSources.d.ts +2 -2
  117. package/esm/data_adapters/BaseAdapter/types.d.ts +1 -0
  118. package/esm/data_adapters/CytobandAdapter/configSchema.d.ts +2 -0
  119. package/esm/data_adapters/CytobandAdapter/configSchema.js +5 -0
  120. package/esm/data_adapters/dataAdapterCache.d.ts +25 -13
  121. package/esm/data_adapters/dataAdapterCache.js +68 -24
  122. package/esm/data_adapters/getFeatureAdapter.d.ts +9 -0
  123. package/esm/data_adapters/getFeatureAdapter.js +17 -0
  124. package/esm/pluggableElementTypes/DisplayType.d.ts +7 -0
  125. package/esm/pluggableElementTypes/DisplayType.js +7 -0
  126. package/esm/pluggableElementTypes/RpcMethodType.d.ts +7 -0
  127. package/esm/pluggableElementTypes/RpcMethodType.js +9 -0
  128. package/esm/pluggableElementTypes/addMenuItems.d.ts +2 -1
  129. package/esm/pluggableElementTypes/addMenuItems.js +2 -1
  130. package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts +2 -0
  131. package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.js +2 -0
  132. package/esm/pluggableElementTypes/models/BaseDisplayModel.d.ts +40 -5
  133. package/esm/pluggableElementTypes/models/BaseDisplayModel.js +57 -9
  134. package/esm/pluggableElementTypes/models/BaseTrackModel.d.ts +5 -7
  135. package/esm/pluggableElementTypes/models/BaseTrackModel.js +9 -10
  136. package/esm/pluggableElementTypes/models/BaseViewModel.d.ts +2 -0
  137. package/esm/pluggableElementTypes/models/BaseViewModel.js +2 -0
  138. package/esm/pluggableElementTypes/models/InternetAccountModel.d.ts +3 -0
  139. package/esm/pluggableElementTypes/models/InternetAccountModel.js +3 -0
  140. package/esm/pluggableElementTypes/models/baseConnectionConfig.d.ts +3 -0
  141. package/esm/pluggableElementTypes/models/baseConnectionConfig.js +3 -0
  142. package/esm/pluggableElementTypes/models/baseInternetAccountConfig.d.ts +3 -1
  143. package/esm/pluggableElementTypes/models/baseInternetAccountConfig.js +3 -1
  144. package/esm/pluggableElementTypes/models/baseTrackConfig.js +12 -1
  145. package/esm/pluggableElementTypes/models/components/SaveTrackData.js +2 -2
  146. package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.d.ts +1 -1
  147. package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.js +1 -1
  148. package/esm/pluginDefinitions.d.ts +7 -0
  149. package/esm/pluginDefinitions.js +20 -0
  150. package/esm/rpc/RpcRegistry.d.ts +2 -11
  151. package/esm/rpc/byteBudget.d.ts +15 -0
  152. package/esm/rpc/byteBudget.js +23 -0
  153. package/esm/rpc/configSchema.d.ts +2 -0
  154. package/esm/rpc/configSchema.js +3 -1
  155. package/esm/rpc/coreRpcMethods.d.ts +1 -2
  156. package/esm/rpc/coreRpcMethods.js +1 -2
  157. package/esm/rpc/explainTransferError.js +3 -3
  158. package/esm/rpc/methods/CoreGetEncodedLayers.d.ts +2 -2
  159. package/esm/rpc/methods/CoreGetEncodedLayers.js +7 -5
  160. package/esm/rpc/methods/CoreLoadTrackCode.d.ts +17 -0
  161. package/esm/rpc/methods/CoreLoadTrackCode.js +24 -0
  162. package/esm/rpc/methods/layerFeatures.d.ts +9 -6
  163. package/esm/rpc/methods/layerFeatures.js +21 -5
  164. package/esm/ui/ActionLink.d.ts +3 -2
  165. package/esm/ui/ActionLink.js +4 -2
  166. package/esm/ui/AddCustomPluginDialog.d.ts +3 -2
  167. package/esm/ui/AddCustomPluginDialog.js +6 -4
  168. package/esm/ui/AppLogo.js +43 -3
  169. package/esm/ui/BaseTooltip.d.ts +3 -2
  170. package/esm/ui/BaseTooltip.js +4 -2
  171. package/esm/ui/CascadingMenu.js +14 -12
  172. package/esm/ui/CascadingMenuButton.d.ts +2 -2
  173. package/esm/ui/CascadingMenuButton.js +5 -4
  174. package/esm/ui/CascadingMenuHelpDialog.d.ts +3 -2
  175. package/esm/ui/CascadingMenuHelpDialog.js +4 -2
  176. package/esm/ui/CascadingMenuHelpIconButton.d.ts +4 -3
  177. package/esm/ui/CascadingMenuHelpIconButton.js +9 -5
  178. package/esm/ui/ColorPicker.d.ts +5 -4
  179. package/esm/ui/ColorPicker.js +6 -4
  180. package/esm/ui/ContextMenu.d.ts +1 -1
  181. package/esm/ui/ContextMenu.js +1 -1
  182. package/esm/ui/CopyToClipboardButton.d.ts +3 -2
  183. package/esm/ui/CopyToClipboardButton.js +4 -2
  184. package/esm/ui/Crosshairs.js +13 -10
  185. package/esm/ui/DOMPurifySanitizedHTML.d.ts +3 -2
  186. package/esm/ui/DOMPurifySanitizedHTML.js +4 -2
  187. package/esm/ui/DataGridFlexContainer.d.ts +3 -2
  188. package/esm/ui/DataGridFlexContainer.js +4 -2
  189. package/esm/ui/Dialog.d.ts +1 -1
  190. package/esm/ui/Dialog.js +5 -4
  191. package/esm/ui/DropDownMenu.js +2 -2
  192. package/esm/ui/EditableTypography.d.ts +1 -1
  193. package/esm/ui/EditableTypography.js +3 -2
  194. package/esm/ui/ErrorActions.d.ts +3 -2
  195. package/esm/ui/ErrorActions.js +4 -2
  196. package/esm/ui/ErrorBanner.d.ts +2 -2
  197. package/esm/ui/ErrorBanner.js +3 -2
  198. package/esm/ui/ErrorBar.d.ts +3 -2
  199. package/esm/ui/ErrorBar.js +4 -2
  200. package/esm/ui/ErrorMessage.d.ts +3 -2
  201. package/esm/ui/ErrorMessage.js +4 -2
  202. package/esm/ui/ErrorMessageStackTraceContents.d.ts +3 -2
  203. package/esm/ui/ErrorMessageStackTraceContents.js +4 -2
  204. package/esm/ui/ErrorMessageStackTraceDialog.d.ts +3 -2
  205. package/esm/ui/ErrorMessageStackTraceDialog.js +4 -2
  206. package/esm/ui/ErrorOverlay.d.ts +3 -2
  207. package/esm/ui/ErrorOverlay.js +4 -2
  208. package/esm/ui/ExportSvgDialog.d.ts +3 -2
  209. package/esm/ui/ExportSvgDialog.js +4 -2
  210. package/esm/ui/ExternalLink.d.ts +2 -1
  211. package/esm/ui/ExternalLink.js +4 -2
  212. package/esm/ui/FactoryResetDialog.d.ts +3 -2
  213. package/esm/ui/FactoryResetDialog.js +4 -2
  214. package/esm/ui/FatalErrorDialog.d.ts +3 -2
  215. package/esm/ui/FatalErrorDialog.js +6 -4
  216. package/esm/ui/FileDropZone.d.ts +3 -2
  217. package/esm/ui/FileDropZone.js +4 -2
  218. package/esm/ui/FileSelector/LocalFileChooser.js +4 -4
  219. package/esm/ui/FileSelector/LocationInput.d.ts +3 -2
  220. package/esm/ui/FileSelector/LocationInput.js +4 -2
  221. package/esm/ui/FileSelector/SourceTypeSelector.d.ts +3 -2
  222. package/esm/ui/FileSelector/SourceTypeSelector.js +8 -6
  223. package/esm/ui/GpuFallbackButton.d.ts +3 -2
  224. package/esm/ui/GpuFallbackButton.js +4 -2
  225. package/esm/ui/HoverMenu.d.ts +2 -2
  226. package/esm/ui/HoverMenu.js +7 -3
  227. package/esm/ui/HoverTooltip.d.ts +3 -2
  228. package/esm/ui/HoverTooltip.js +4 -2
  229. package/esm/ui/Icons.d.ts +5 -5
  230. package/esm/ui/Icons.js +11 -10
  231. package/esm/ui/InlineMenuControls.d.ts +2 -2
  232. package/esm/ui/InlineMenuControls.js +4 -3
  233. package/esm/ui/JexlFilterRowEditors.d.ts +4 -4
  234. package/esm/ui/JexlFilterRowEditors.js +9 -8
  235. package/esm/ui/LabeledCheckbox.d.ts +3 -2
  236. package/esm/ui/LabeledCheckbox.js +4 -2
  237. package/esm/ui/LazyBaseTooltip.d.ts +12 -3
  238. package/esm/ui/LazyBaseTooltip.js +4 -2
  239. package/esm/ui/LegendSwatchGlyph.js +1 -0
  240. package/esm/ui/LoadingDots.d.ts +2 -1
  241. package/esm/ui/LoadingDots.js +4 -2
  242. package/esm/ui/LoadingEllipses.d.ts +5 -2
  243. package/esm/ui/LoadingEllipses.js +5 -3
  244. package/esm/ui/LoadingOverlay.d.ts +3 -2
  245. package/esm/ui/LoadingOverlay.js +4 -2
  246. package/esm/ui/LoadingProgress.d.ts +3 -2
  247. package/esm/ui/LoadingProgress.js +4 -2
  248. package/esm/ui/Logo.d.ts +2 -2
  249. package/esm/ui/Logo.js +9 -8
  250. package/esm/ui/MenuItemChevron.d.ts +2 -2
  251. package/esm/ui/MenuItemChevron.js +3 -2
  252. package/esm/ui/MenuItemEndDecoration.d.ts +2 -2
  253. package/esm/ui/MenuItemEndDecoration.js +3 -2
  254. package/esm/ui/MenuItemTrailing.d.ts +2 -2
  255. package/esm/ui/MenuItemTrailing.js +7 -6
  256. package/esm/ui/MenuTypes.d.ts +21 -1
  257. package/esm/ui/MenuTypes.js +20 -0
  258. package/esm/ui/MonospaceTextField.d.ts +3 -2
  259. package/esm/ui/MonospaceTextField.js +4 -2
  260. package/esm/ui/NumberTextField.d.ts +2 -2
  261. package/esm/ui/NumberTextField.js +4 -2
  262. package/esm/ui/PaletteContext.d.ts +11 -9
  263. package/esm/ui/PaletteContext.js +33 -18
  264. package/esm/ui/PluginStoreCard.d.ts +3 -2
  265. package/esm/ui/PluginStoreCard.js +4 -2
  266. package/esm/ui/PopoverPicker.d.ts +3 -2
  267. package/esm/ui/PopoverPicker.js +4 -2
  268. package/esm/ui/PrerenderedCanvas.d.ts +2 -2
  269. package/esm/ui/PrerenderedCanvas.js +3 -2
  270. package/esm/ui/RedErrorMessageBox.d.ts +3 -2
  271. package/esm/ui/RedErrorMessageBox.js +4 -2
  272. package/esm/ui/RefNameAutocomplete/EndAdornment.d.ts +3 -2
  273. package/esm/ui/RefNameAutocomplete/EndAdornment.js +4 -2
  274. package/esm/ui/RefNameAutocomplete/HelpDialog.d.ts +3 -2
  275. package/esm/ui/RefNameAutocomplete/HelpDialog.js +4 -2
  276. package/esm/ui/ReplaceCurrentViewButton.d.ts +3 -2
  277. package/esm/ui/ReplaceCurrentViewButton.js +4 -2
  278. package/esm/ui/ResizeHandle.d.ts +2 -2
  279. package/esm/ui/ResizeHandle.js +3 -2
  280. package/esm/ui/SanitizedHTML.d.ts +3 -2
  281. package/esm/ui/SanitizedHTML.js +6 -4
  282. package/esm/ui/ScrollChrome.d.ts +3 -2
  283. package/esm/ui/ScrollChrome.js +4 -2
  284. package/esm/ui/ScrollEdgeShadow.d.ts +2 -2
  285. package/esm/ui/ScrollEdgeShadow.js +2 -2
  286. package/esm/ui/SessionJsonPanel.d.ts +3 -2
  287. package/esm/ui/SessionJsonPanel.js +4 -2
  288. package/esm/ui/ShareLinkField.d.ts +3 -2
  289. package/esm/ui/ShareLinkField.js +4 -2
  290. package/esm/ui/SingleSlider.d.ts +2 -2
  291. package/esm/ui/SingleSlider.js +4 -2
  292. package/esm/ui/SliderTooltip.d.ts +2 -1
  293. package/esm/ui/SliderTooltip.js +4 -2
  294. package/esm/ui/SnackbarContents.d.ts +3 -2
  295. package/esm/ui/SnackbarContents.js +4 -2
  296. package/esm/ui/SnackbarModel.d.ts +2 -0
  297. package/esm/ui/SnackbarModel.js +2 -0
  298. package/esm/ui/StackTraceButton.d.ts +3 -2
  299. package/esm/ui/StackTraceButton.js +4 -2
  300. package/esm/ui/StatusProgressBar.d.ts +3 -2
  301. package/esm/ui/StatusProgressBar.js +4 -2
  302. package/esm/ui/SubmitForm.d.ts +2 -1
  303. package/esm/ui/SubmitForm.js +4 -2
  304. package/esm/ui/SvgColorLegend.d.ts +3 -4
  305. package/esm/ui/SvgColorLegend.js +27 -18
  306. package/esm/ui/TagTextField.d.ts +2 -2
  307. package/esm/ui/TagTextField.js +4 -2
  308. package/esm/ui/ViewLoadingScreen.d.ts +3 -2
  309. package/esm/ui/ViewLoadingScreen.js +4 -2
  310. package/esm/ui/buildExtraTrackMenuItems.d.ts +2 -2
  311. package/esm/ui/colorScale.d.ts +5 -1
  312. package/esm/ui/colorScale.js +12 -10
  313. package/esm/ui/colors.d.ts +42 -31
  314. package/esm/ui/colors.js +85 -48
  315. package/esm/ui/filterMenuItems.d.ts +10 -31
  316. package/esm/ui/filterMenuItems.js +13 -14
  317. package/esm/ui/index.d.ts +1 -1
  318. package/esm/ui/index.js +1 -1
  319. package/esm/ui/launchTargetsMenuItem.js +9 -13
  320. package/esm/ui/legendMenuItem.d.ts +4 -4
  321. package/esm/ui/legendMenuItem.js +4 -4
  322. package/esm/ui/menuItemAdornment.d.ts +1 -1
  323. package/esm/ui/menuItemAdornment.js +1 -1
  324. package/esm/ui/menuItems.d.ts +1 -1
  325. package/esm/ui/menuItems.js +1 -1
  326. package/esm/ui/menuLabels.d.ts +2 -2
  327. package/esm/ui/menuLabels.js +2 -2
  328. package/esm/ui/multiTrackMenuItems.d.ts +2 -2
  329. package/esm/ui/palette.d.ts +2 -2
  330. package/esm/ui/palette.js +10 -10
  331. package/esm/ui/radioSubMenu.d.ts +5 -3
  332. package/esm/ui/radioSubMenu.js +2 -2
  333. package/esm/ui/rampKey.d.ts +15 -0
  334. package/esm/ui/rampKey.js +17 -0
  335. package/esm/ui/showSubMenu.d.ts +0 -5
  336. package/esm/ui/showSubMenu.js +6 -15
  337. package/esm/ui/theme.d.ts +2 -2
  338. package/esm/ui/theme.js +1 -1
  339. package/esm/ui/useAssemblySelection.d.ts +2 -0
  340. package/esm/ui/useMouseTracking.d.ts +8 -20
  341. package/esm/ui/useMouseTracking.js +23 -62
  342. package/esm/ui/usePlacedMenuFocus.d.ts +19 -0
  343. package/esm/ui/usePlacedMenuFocus.js +28 -0
  344. package/esm/util/Base1DViewModel.d.ts +5 -3
  345. package/esm/util/Base1DViewModel.js +5 -3
  346. package/esm/util/SvgCanvas.js +1 -1
  347. package/esm/util/aggregateFieldName.d.ts +1 -10
  348. package/esm/util/aggregateFieldName.js +1 -8
  349. package/esm/util/alignedBytes.d.ts +19 -0
  350. package/esm/util/alignedBytes.js +37 -0
  351. package/esm/util/analytics.d.ts +6 -9
  352. package/esm/util/analytics.js +148 -15
  353. package/esm/util/bezierConnector.d.ts +20 -0
  354. package/esm/util/bezierConnector.js +34 -96
  355. package/esm/util/cacheBudgets.d.ts +3 -0
  356. package/esm/util/cacheBudgets.js +3 -0
  357. package/esm/util/categoricalField.d.ts +24 -4
  358. package/esm/util/categoricalField.js +38 -5
  359. package/esm/util/cellMatches.js +14 -14
  360. package/esm/util/cellsStep.d.ts +3 -5
  361. package/esm/util/cellsStep.js +31 -29
  362. package/esm/util/color/index.d.ts +1 -1
  363. package/esm/util/color/index.js +2 -2
  364. package/esm/util/color-bits/bit.js +1 -1
  365. package/esm/util/color-bits/parse.js +28 -17
  366. package/esm/util/colorBits.d.ts +15 -4
  367. package/esm/util/colorBits.js +38 -15
  368. package/esm/util/colorRamp.d.ts +3 -3
  369. package/esm/util/colorRamp.js +20 -2
  370. package/esm/util/colorScale.d.ts +123 -22
  371. package/esm/util/colorScale.js +157 -28
  372. package/esm/util/colorSchemes.d.ts +7 -3
  373. package/esm/util/colorSchemes.js +8 -2
  374. package/esm/util/createSvgRasterCanvas.d.ts +14 -1
  375. package/esm/util/createSvgRasterCanvas.js +36 -12
  376. package/esm/util/diagonalizeRegions.js +18 -9
  377. package/esm/util/featureTransforms.d.ts +2 -2
  378. package/esm/util/featureTransforms.js +85 -135
  379. package/esm/util/fileHandleStore.js +5 -0
  380. package/esm/util/groupKeys.d.ts +5 -4
  381. package/esm/util/groupKeys.js +15 -9
  382. package/esm/util/index.js +1 -1
  383. package/esm/util/installFetch.d.ts +2 -2
  384. package/esm/util/installPrerequisiteFetch.d.ts +8 -3
  385. package/esm/util/installPrerequisiteFetch.js +9 -7
  386. package/esm/util/io/RemoteFileWithRangeCache.d.ts +1 -1
  387. package/esm/util/io/RemoteFileWithRangeCache.js +1 -1
  388. package/esm/util/isoformRank.d.ts +39 -0
  389. package/esm/util/isoformRank.js +118 -0
  390. package/esm/util/jexl.js +1 -1
  391. package/esm/util/layouts/GranularRectLayout.d.ts +19 -3
  392. package/esm/util/layouts/GranularRectLayout.js +57 -34
  393. package/esm/util/leadingEdgeAutorun.d.ts +9 -1
  394. package/esm/util/leadingEdgeAutorun.js +5 -2
  395. package/esm/util/markEncoding.d.ts +10 -8
  396. package/esm/util/markEncoding.js +50 -12
  397. package/esm/util/markEncodingTypes.d.ts +77 -21
  398. package/esm/util/originCut.d.ts +14 -0
  399. package/esm/util/originCut.js +19 -0
  400. package/esm/util/paintLayer.d.ts +1 -1
  401. package/esm/util/paintLayer.js +4 -3
  402. package/esm/util/pathSeries.d.ts +18 -0
  403. package/esm/util/pathSeries.js +143 -0
  404. package/esm/util/pressOwner.d.ts +20 -0
  405. package/esm/util/pressOwner.js +26 -0
  406. package/esm/util/quantileExtent.d.ts +23 -1
  407. package/esm/util/quantileExtent.js +25 -2
  408. package/esm/util/rowStackGeometry.d.ts +1 -1
  409. package/esm/util/rowStackGeometry.js +1 -1
  410. package/esm/util/sessionActivity.d.ts +36 -0
  411. package/esm/util/sessionActivity.js +88 -0
  412. package/esm/util/stepOutputs.d.ts +165 -0
  413. package/esm/util/stepOutputs.js +201 -0
  414. package/esm/util/stepTables.d.ts +7 -3
  415. package/esm/util/stepTables.js +86 -3
  416. package/esm/util/systemColorScheme.d.ts +4 -0
  417. package/esm/util/systemColorScheme.js +21 -0
  418. package/esm/util/tabix.d.ts +1 -1
  419. package/esm/util/tabix.js +1 -1
  420. package/esm/util/temporaryAssembly.d.ts +2 -2
  421. package/esm/util/temporaryAssembly.js +2 -3
  422. package/esm/util/thresholdScale.d.ts +1 -1
  423. package/esm/util/thresholdScale.js +1 -1
  424. package/esm/util/trackConfigDelta.d.ts +1 -1
  425. package/esm/util/tracks.d.ts +25 -15
  426. package/esm/util/tracks.js +68 -44
  427. package/esm/util/types/index.d.ts +15 -7
  428. package/esm/util/types/index.js +21 -2
  429. package/esm/util/usePanZoom.js +4 -10
  430. package/esm/util/useRowVirtualScroll.d.ts +1 -0
  431. package/esm/util/windowStep.d.ts +6 -0
  432. package/esm/util/windowStep.js +153 -0
  433. package/package.json +27 -16
  434. package/esm/data_adapters/BaseAdapter/featureDensity.d.ts +0 -40
  435. package/esm/data_adapters/BaseAdapter/featureDensity.js +0 -31
  436. package/esm/rpc/methods/CoreGetFeatureDensity.d.ts +0 -11
  437. package/esm/rpc/methods/CoreGetFeatureDensity.js +0 -22
  438. package/esm/rpc/methods/CoreLoadAdapterCode.d.ts +0 -13
  439. package/esm/rpc/methods/CoreLoadAdapterCode.js +0 -16
@@ -1,5 +1,6 @@
1
1
  import { jsx as _jsx } from "react/jsx-runtime";
2
2
  import { Suspense } from 'react';
3
+ import { observer } from 'mobx-react';
3
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  // React tags the result of React.lazy() with this; anything else (a plain or
4
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  // forwardRef/memo component) is already loaded and needs no Suspense boundary
5
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  const REACT_LAZY_TYPE = Symbol.for('react.lazy');
@@ -12,9 +13,9 @@ function lazyifyComponent(key, ReactComponent) {
12
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  if (!isLazy(ReactComponent)) {
13
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  return [key, ReactComponent];
14
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  }
15
- function Component(props) {
16
+ const Component = observer(function Component(props) {
16
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  return (_jsx(Suspense, { fallback: null, children: _jsx(ReactComponent, { ...props }) }));
17
- }
18
+ });
18
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  Component.displayName = key;
19
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  return [key, Component];
20
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  }
@@ -131,6 +131,8 @@ export default [
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  '@jbrowse/core/assemblyManager',
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  '@jbrowse/core/assemblyManager/assembly',
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  '@jbrowse/core/assemblyManager/assemblyConfigSchema',
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+ '@jbrowse/core/assemblyManager/expandAssemblyConfigShorthand',
135
+ '@jbrowse/core/assemblyManager/refNameMaps',
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  '@jbrowse/core/BaseFeatureWidget',
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  '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail',
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  '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/Attributes',
@@ -203,6 +205,7 @@ export default [
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  '@jbrowse/core/ui/colors',
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  '@jbrowse/core/ui/colorScale',
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  '@jbrowse/core/ui/ConfirmDialog',
208
+ '@jbrowse/core/ui/ContextMenu',
206
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  '@jbrowse/core/ui/DataGridFlexContainer',
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  '@jbrowse/core/ui/Dialog',
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  '@jbrowse/core/ui/DraggableDialog',
@@ -236,6 +239,7 @@ export default [
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  '@jbrowse/core/ui/PluginStoreCard',
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  '@jbrowse/core/ui/PopoverPicker',
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  '@jbrowse/core/ui/ProgressChip',
242
+ '@jbrowse/core/ui/rampKey',
239
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  '@jbrowse/core/ui/ResizeHandle',
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  '@jbrowse/core/ui/ReturnToImportFormDialog',
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  '@jbrowse/core/ui/SanitizedHTML',
@@ -248,6 +252,7 @@ export default [
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  '@jbrowse/core/ui/SnackbarModel',
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  '@jbrowse/core/ui/StackTraceButton',
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  '@jbrowse/core/ui/styleTheme',
255
+ '@jbrowse/core/ui/SubmitDialog',
251
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  '@jbrowse/core/ui/SvgColorLegend',
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  '@jbrowse/core/ui/theme',
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  '@jbrowse/core/ui/useCoalescedPointer',
@@ -259,6 +264,7 @@ export default [
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  '@jbrowse/core/util/adapterMetadata',
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  '@jbrowse/core/util/addRelativeUris',
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  '@jbrowse/core/util/aggregateFieldName',
267
+ '@jbrowse/core/util/alignedBytes',
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  '@jbrowse/core/util/analytics',
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  '@jbrowse/core/util/animationAllowed',
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  '@jbrowse/core/util/assemblyConfigUtils',
@@ -317,6 +323,7 @@ export default [
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  '@jbrowse/core/util/io',
318
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  '@jbrowse/core/util/io/RemoteFileWithRangeCache',
319
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  '@jbrowse/core/util/isDataCurrent',
326
+ '@jbrowse/core/util/isoformRank',
320
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  '@jbrowse/core/util/isTextEntryFocused',
321
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  '@jbrowse/core/util/jexl',
322
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  '@jbrowse/core/util/jexlFilters',
@@ -339,9 +346,11 @@ export default [
339
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  '@jbrowse/core/util/numericUtils',
340
347
  '@jbrowse/core/util/offscreenCanvasPonyfill',
341
348
  '@jbrowse/core/util/openViews',
349
+ '@jbrowse/core/util/originCut',
342
350
  '@jbrowse/core/util/paintLayer',
343
351
  '@jbrowse/core/util/parseLineByLine',
344
352
  '@jbrowse/core/util/preloadComponent',
353
+ '@jbrowse/core/util/pressOwner',
345
354
  '@jbrowse/core/util/progress',
346
355
  '@jbrowse/core/util/quantileExtent',
347
356
  '@jbrowse/core/util/range',
@@ -358,6 +367,7 @@ export default [
358
367
  '@jbrowse/core/util/simpleFeature',
359
368
  '@jbrowse/core/util/starFusion',
360
369
  '@jbrowse/core/util/stats',
370
+ '@jbrowse/core/util/stepOutputs',
361
371
  '@jbrowse/core/util/svAlt',
362
372
  '@jbrowse/core/util/SvgCanvas',
363
373
  '@jbrowse/core/util/svgColorProps',
@@ -394,18 +404,17 @@ export default [
394
404
  '@jbrowse/display-kit/BottomRightIndicators',
395
405
  '@jbrowse/display-kit/ChromeHighlight',
396
406
  '@jbrowse/display-kit/ChromeLegend',
407
+ '@jbrowse/display-kit/chromeOverlaySlots',
397
408
  '@jbrowse/display-kit/coarseTier',
398
409
  '@jbrowse/display-kit/CoarseTierMixin',
399
410
  '@jbrowse/display-kit/coarseTierPhase',
411
+ '@jbrowse/display-kit/colorByMenu',
400
412
  '@jbrowse/display-kit/colorConfigSchema',
413
+ '@jbrowse/display-kit/ColorWritesMixin',
401
414
  '@jbrowse/display-kit/ConfigProblemsIndicator',
402
415
  '@jbrowse/display-kit/configSchema',
403
416
  '@jbrowse/display-kit/const',
404
417
  '@jbrowse/display-kit/ContextMenuMixin',
405
- '@jbrowse/display-kit/densityTier',
406
- '@jbrowse/display-kit/densityTierConfigSchemaFields',
407
- '@jbrowse/display-kit/densityTierMenu',
408
- '@jbrowse/display-kit/DensityTierMixin',
409
418
  '@jbrowse/display-kit/displayAutoruns',
410
419
  '@jbrowse/display-kit/DisplayBackgroundProgress',
411
420
  '@jbrowse/display-kit/DisplayChrome',
@@ -414,11 +423,11 @@ export default [
414
423
  '@jbrowse/display-kit/DisplayErrorBar',
415
424
  '@jbrowse/display-kit/DisplayLoadingOverlay',
416
425
  '@jbrowse/display-kit/DisplayRenderErrorOverlay',
417
- '@jbrowse/display-kit/DisplayStatusChromeBase',
418
426
  '@jbrowse/display-kit/facetConfigSchema',
419
427
  '@jbrowse/display-kit/fetchEachRegion',
420
428
  '@jbrowse/display-kit/fetchInputs',
421
429
  '@jbrowse/display-kit/FetchMixin',
430
+ '@jbrowse/display-kit/floatingLabelHost',
422
431
  '@jbrowse/display-kit/foundationDisplayPhase',
423
432
  '@jbrowse/display-kit/foundationPaintInert',
424
433
  '@jbrowse/display-kit/foundationSvgReady',
@@ -434,6 +443,7 @@ export default [
434
443
  '@jbrowse/display-kit/heightModeConfigSchemaFields',
435
444
  '@jbrowse/display-kit/heightModeMenu',
436
445
  '@jbrowse/display-kit/HeightModeMixin',
446
+ '@jbrowse/display-kit/heldColorSlots',
437
447
  '@jbrowse/display-kit/HiddenGroupsMixin',
438
448
  '@jbrowse/display-kit/highlightHost',
439
449
  '@jbrowse/display-kit/installClearHoverOnViewportChange',
@@ -443,6 +453,7 @@ export default [
443
453
  '@jbrowse/display-kit/KeyedFetchMixin',
444
454
  '@jbrowse/display-kit/legendHost',
445
455
  '@jbrowse/display-kit/LegendMixin',
456
+ '@jbrowse/display-kit/MarkSvgLayer',
446
457
  '@jbrowse/display-kit/MultiRegionDisplayMixin',
447
458
  '@jbrowse/display-kit/planRegionFetch',
448
459
  '@jbrowse/display-kit/PlotDialog',
@@ -458,7 +469,10 @@ export default [
458
469
  '@jbrowse/display-kit/rowColorConfigSchema',
459
470
  '@jbrowse/display-kit/rowsConfigSchema',
460
471
  '@jbrowse/display-kit/rpcArgs',
472
+ '@jbrowse/display-kit/sampleRowsConfigSchema',
473
+ '@jbrowse/display-kit/sectionFacetConfigSchema',
461
474
  '@jbrowse/display-kit/SkippedFeaturesIndicator',
475
+ '@jbrowse/display-kit/SolidColorDialog',
462
476
  '@jbrowse/display-kit/stableIdentityComputed',
463
477
  '@jbrowse/display-kit/StoredHoverMixin',
464
478
  '@jbrowse/display-kit/subPixelBinBp',
@@ -495,6 +509,7 @@ export default [
495
509
  '@jbrowse/render-core/installUpload',
496
510
  '@jbrowse/render-core/instanceCache',
497
511
  '@jbrowse/render-core/instancePass',
512
+ '@jbrowse/render-core/linkFeet',
498
513
  '@jbrowse/render-core/marks',
499
514
  '@jbrowse/render-core/marks/backend',
500
515
  '@jbrowse/render-core/marks/colorFill',
@@ -519,8 +534,9 @@ export default [
519
534
  '@jbrowse/render-core/shaders/clipStrip',
520
535
  '@jbrowse/render-core/shaders/clipStripConsts',
521
536
  '@jbrowse/render-core/shaders/colorRampLut',
537
+ '@jbrowse/render-core/shaders/connectorMark',
538
+ '@jbrowse/render-core/shaders/connectorMarkConsts',
522
539
  '@jbrowse/render-core/shaders/coverageBar',
523
- '@jbrowse/render-core/shaders/coverageIndicator',
524
540
  '@jbrowse/render-core/shaders/coverageInterbase',
525
541
  '@jbrowse/render-core/shaders/coverageMod',
526
542
  '@jbrowse/render-core/shaders/coverageSnp',
@@ -0,0 +1 @@
1
+ export { default } from './names.generated.ts';
@@ -0,0 +1,2 @@
1
+ declare const names: Record<string, string[]>;
2
+ export default names;