@jbrowse/core 5.0.0-beta.10 → 5.0.0-beta.13
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +210 -80
- package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +0 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts +3 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +14 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.js +22 -6
- package/esm/BaseFeatureWidget/BaseFeatureDetail/jexlFilterActions.js +3 -4
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.d.ts +2 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.js +5 -5
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.js +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.d.ts +3 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.js +2 -2
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.d.ts +2 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.js +7 -14
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.js +3 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.js +8 -5
- package/esm/BaseFeatureWidget/stateModelFactory.d.ts +7 -0
- package/esm/BaseFeatureWidget/stateModelFactory.js +11 -0
- package/esm/BaseFeatureWidget/types.d.ts +2 -0
- package/esm/CorePlugin.js +32 -1
- package/esm/PluginManager.d.ts +6 -3
- package/esm/PluginManager.js +6 -3
- package/esm/ReExports/coreModules.generated.js +291 -283
- package/esm/ReExports/coreWorkerModules.generated.js +288 -281
- package/esm/ReExports/list.js +10 -2
- package/esm/TextSearch/TextSearchManager.d.ts +3 -3
- package/esm/TextSearch/TextSearchManager.js +6 -13
- package/esm/configuration/configurationSchema.d.ts +33 -95
- package/esm/configuration/configurationSchema.js +50 -218
- package/esm/configuration/configurationSlot.d.ts +18 -64
- package/esm/configuration/configurationSlot.js +31 -97
- package/esm/configuration/formatDetailsConfigSchema.js +2 -0
- package/esm/configuration/getConf.d.ts +7 -36
- package/esm/configuration/getConf.js +7 -37
- package/esm/configuration/index.d.ts +5 -2
- package/esm/configuration/index.js +3 -1
- package/esm/configuration/partitionAdvanced.d.ts +12 -0
- package/esm/configuration/partitionAdvanced.js +42 -0
- package/esm/configuration/plot.d.ts +67 -0
- package/esm/configuration/plot.js +175 -0
- package/esm/configuration/readConfObject.d.ts +15 -17
- package/esm/configuration/readConfObject.js +19 -50
- package/esm/configuration/schemaTypes.js +5 -1
- package/esm/configuration/snapshotPreprocess.js +1 -3
- package/esm/configuration/types.d.ts +60 -159
- package/esm/pluggableElementTypes/DisplayType.d.ts +14 -0
- package/esm/pluggableElementTypes/DisplayType.js +13 -0
- package/esm/pluggableElementTypes/RpcMethodType.d.ts +7 -0
- package/esm/pluggableElementTypes/RpcMethodType.js +9 -0
- package/esm/pluggableElementTypes/WidgetType.d.ts +6 -0
- package/esm/pluggableElementTypes/WidgetType.js +6 -0
- package/esm/pluggableElementTypes/addMenuItems.d.ts +2 -1
- package/esm/pluggableElementTypes/addMenuItems.js +2 -1
- package/esm/pluggableElementTypes/index.js +1 -8
- package/esm/pluggableElementTypes/models/BaseDisplayModel.d.ts +58 -1
- package/esm/pluggableElementTypes/models/BaseDisplayModel.js +84 -2
- package/esm/pluggableElementTypes/models/BaseTrackModel.d.ts +2 -4
- package/esm/pluggableElementTypes/models/BaseTrackModel.js +2 -4
- package/esm/pluggableElementTypes/models/BaseViewModel.d.ts +2 -2
- package/esm/pluggableElementTypes/models/BaseViewModel.js +1 -1
- package/esm/pluggableElementTypes/models/baseTrackConfig.js +3 -0
- package/esm/rpc/RpcRegistry.d.ts +2 -1
- package/esm/rpc/byteBudget.d.ts +7 -0
- package/esm/rpc/byteBudget.js +10 -0
- package/esm/rpc/coreRpcMethods.d.ts +1 -1
- package/esm/rpc/coreRpcMethods.js +1 -1
- package/esm/rpc/explainTransferError.js +3 -3
- package/esm/rpc/methods/CoreLoadTrackCode.d.ts +17 -0
- package/esm/rpc/methods/CoreLoadTrackCode.js +24 -0
- package/esm/ui/AppLogo.js +43 -3
- package/esm/ui/JexlFilterDialog.d.ts +1 -1
- package/esm/ui/JexlFilterDialog.js +2 -3
- package/esm/ui/buildExtraTrackMenuItems.d.ts +2 -2
- package/esm/ui/colors.d.ts +41 -30
- package/esm/ui/colors.js +81 -44
- package/esm/ui/multiTrackMenuItems.d.ts +2 -2
- package/esm/util/TimeTraveller.d.ts +3 -0
- package/esm/util/TimeTraveller.js +34 -2
- package/esm/util/alignedBytes.d.ts +19 -0
- package/esm/util/alignedBytes.js +37 -0
- package/esm/util/analytics.d.ts +5 -6
- package/esm/util/analytics.js +5 -3
- package/esm/util/baseDisplayConfig.d.ts +8 -0
- package/esm/util/baseDisplayConfig.js +27 -0
- package/esm/util/bezierConnector.js +5 -1
- package/esm/util/cachedSetup.d.ts +16 -6
- package/esm/util/cachedSetup.js +108 -38
- package/esm/util/categoricalField.d.ts +23 -3
- package/esm/util/categoricalField.js +36 -3
- package/esm/util/cellMatches.d.ts +23 -0
- package/esm/util/cellMatches.js +264 -0
- package/esm/util/cellsStep.d.ts +27 -0
- package/esm/util/cellsStep.js +439 -0
- package/esm/util/color-bits/parse.js +22 -11
- package/esm/util/colorRamp.js +6 -0
- package/esm/util/colorScale.d.ts +9 -2
- package/esm/util/colorScale.js +33 -2
- package/esm/util/colorSchemes.d.ts +4 -2
- package/esm/util/colorSchemes.js +4 -1
- package/esm/util/copyToClipboard.js +8 -1
- package/esm/util/createAbortRotation.js +3 -3
- package/esm/util/featureTransforms.d.ts +7 -6
- package/esm/util/featureTransforms.js +131 -479
- package/esm/util/fetchPhases.d.ts +1 -1
- package/esm/util/formatBytes.js +1 -1
- package/esm/util/formatGuessers.d.ts +25 -14
- package/esm/util/formatGuessers.js +42 -27
- package/esm/util/formatRelativeTime.js +1 -1
- package/esm/util/getLocationUri.d.ts +2 -1
- package/esm/util/getLocationUri.js +8 -2
- package/esm/util/groupKeys.d.ts +4 -5
- package/esm/util/groupKeys.js +7 -6
- package/esm/util/intervals.js +9 -4
- package/esm/util/io/index.js +3 -1
- package/esm/util/isoformRank.d.ts +39 -0
- package/esm/util/isoformRank.js +118 -0
- package/esm/util/jexlFilters.d.ts +31 -49
- package/esm/util/jexlFilters.js +29 -39
- package/esm/util/locString.js +5 -2
- package/esm/util/markEncoding.js +48 -8
- package/esm/util/markEncodingTypes.d.ts +11 -2
- package/esm/util/quantileExtent.d.ts +22 -0
- package/esm/util/quantileExtent.js +24 -1
- package/esm/util/springAnimate.js +1 -1
- package/esm/util/stepTables.d.ts +14 -0
- package/esm/util/stepTables.js +38 -4
- package/esm/util/systemColorScheme.d.ts +4 -0
- package/esm/util/systemColorScheme.js +21 -0
- package/esm/util/tabix.d.ts +7 -3
- package/esm/util/tabix.js +3 -3
- package/esm/util/temporaryAssembly.d.ts +2 -2
- package/esm/util/temporaryAssembly.js +2 -3
- package/esm/util/trackConfigDelta.d.ts +1 -1
- package/esm/util/tracks.d.ts +28 -45
- package/esm/util/tracks.js +71 -82
- package/esm/util/types/index.d.ts +15 -7
- package/esm/util/types/index.js +21 -2
- package/esm/util/unknownSnapshotKeys.d.ts +3 -1
- package/esm/util/unknownSnapshotKeys.js +5 -11
- package/esm/util/usePanZoom.js +10 -3
- package/esm/util/useRafCommit.js +1 -0
- package/esm/util/useRowVirtualScroll.d.ts +1 -0
- package/esm/util/withFeatureDetails.js +4 -0
- package/package.json +13 -9
- package/esm/rpc/methods/CoreLoadAdapterCode.d.ts +0 -13
- package/esm/rpc/methods/CoreLoadAdapterCode.js +0 -16
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'@jbrowse/core/util/aggregateFieldName': m131,
|
|
402
|
+
'@jbrowse/core/util/alignedBytes': m132,
|
|
403
|
+
'@jbrowse/core/util/analytics': m133,
|
|
404
|
+
'@jbrowse/core/util/animationAllowed': m134,
|
|
405
|
+
'@jbrowse/core/util/assemblyConfigUtils': m135,
|
|
406
|
+
'@jbrowse/core/util/bandHeight': m136,
|
|
407
|
+
'@jbrowse/core/util/bandLayout': m137,
|
|
408
|
+
'@jbrowse/core/util/Base1DUtils': m138,
|
|
409
|
+
'@jbrowse/core/util/Base1DViewModel': m139.default,
|
|
410
|
+
'@jbrowse/core/util/baseDisplayConfig': m140,
|
|
411
|
+
'@jbrowse/core/util/bgzfWorkerPool': m141,
|
|
412
|
+
'@jbrowse/core/util/blockTypes': m142,
|
|
413
|
+
'@jbrowse/core/util/cacheBudgets': m143,
|
|
414
|
+
'@jbrowse/core/util/calculateDynamicBlocks': m144.default,
|
|
415
|
+
'@jbrowse/core/util/calculateStaticBlocks': m145.default,
|
|
416
|
+
'@jbrowse/core/util/categoricalField': m146,
|
|
417
|
+
'@jbrowse/core/util/chooseGridPitch': m147,
|
|
418
|
+
'@jbrowse/core/util/color': m148,
|
|
419
|
+
'@jbrowse/core/util/color/cssColorsLevel4': m149,
|
|
420
|
+
'@jbrowse/core/util/colorBits': m150,
|
|
421
|
+
'@jbrowse/core/util/colord': m151,
|
|
422
|
+
'@jbrowse/core/util/colorRamp': m152,
|
|
423
|
+
'@jbrowse/core/util/colorScale': m153,
|
|
424
|
+
'@jbrowse/core/util/colorSchemes': m154,
|
|
425
|
+
'@jbrowse/core/util/convertCodingSequenceToPeptides': m155,
|
|
426
|
+
'@jbrowse/core/util/copyText': m156,
|
|
427
|
+
'@jbrowse/core/util/createAbortRotation': m157,
|
|
428
|
+
'@jbrowse/core/util/createSvgRasterCanvas': m158,
|
|
429
|
+
'@jbrowse/core/util/cssColorParse': m159,
|
|
430
|
+
'@jbrowse/core/util/deepEqual': m160,
|
|
431
|
+
'@jbrowse/core/util/deepMerge': m161,
|
|
432
|
+
'@jbrowse/core/util/diagonalizeRegions': m162,
|
|
433
|
+
'@jbrowse/core/util/eventPoint': m163,
|
|
434
|
+
'@jbrowse/core/util/expandLooseSearchIndex': m164,
|
|
435
|
+
'@jbrowse/core/util/featureTable': m165,
|
|
436
|
+
'@jbrowse/core/util/featureTransforms': m166,
|
|
437
|
+
'@jbrowse/core/util/fetchContext': m167,
|
|
438
|
+
'@jbrowse/core/util/fetchHub': m168,
|
|
439
|
+
'@jbrowse/core/util/fetchPhases': m169,
|
|
440
|
+
'@jbrowse/core/util/fieldReader': m170,
|
|
441
|
+
'@jbrowse/core/util/fileHandleStore': m171,
|
|
442
|
+
'@jbrowse/core/util/FileSaver': m172,
|
|
443
|
+
'@jbrowse/core/util/flatbush': m173.default,
|
|
444
|
+
'@jbrowse/core/util/formatFastaStrings': m174,
|
|
445
|
+
'@jbrowse/core/util/frameCoalescer': m175,
|
|
446
|
+
'@jbrowse/core/util/freezeDeep': m176,
|
|
447
|
+
'@jbrowse/core/util/geneticCodes': m177,
|
|
448
|
+
'@jbrowse/core/util/getRelativeX': m178,
|
|
449
|
+
'@jbrowse/core/util/groupKeys': m179,
|
|
450
|
+
'@jbrowse/core/util/highlights': m180,
|
|
451
|
+
'@jbrowse/core/util/hooks': m181,
|
|
452
|
+
'@jbrowse/core/util/htmlText': m182,
|
|
453
|
+
'@jbrowse/core/util/indexCandidates': m183,
|
|
454
|
+
'@jbrowse/core/util/installClearHoverOnSurfaceMove': m184,
|
|
455
|
+
'@jbrowse/core/util/installFetch': m185,
|
|
456
|
+
'@jbrowse/core/util/installInitAutorun': m186,
|
|
457
|
+
'@jbrowse/core/util/installPrerequisiteFetch': m187,
|
|
458
|
+
'@jbrowse/core/util/io': m188,
|
|
459
|
+
'@jbrowse/core/util/io/RemoteFileWithRangeCache': m189,
|
|
460
|
+
'@jbrowse/core/util/isDataCurrent': m190,
|
|
461
|
+
'@jbrowse/core/util/isoformRank': m191,
|
|
462
|
+
'@jbrowse/core/util/isTextEntryFocused': m192,
|
|
463
|
+
'@jbrowse/core/util/jexl': m193.default,
|
|
464
|
+
'@jbrowse/core/util/jexlFilters': m194,
|
|
465
|
+
'@jbrowse/core/util/jexlStrings': m195,
|
|
466
|
+
'@jbrowse/core/util/layouts': m196,
|
|
467
|
+
'@jbrowse/core/util/layouts/GranularRectLayout': m197.default,
|
|
468
|
+
'@jbrowse/core/util/layouts/placeRect': m198,
|
|
469
|
+
'@jbrowse/core/util/lazyAfterAttach': m199,
|
|
470
|
+
'@jbrowse/core/util/lazyWithPreload': m200,
|
|
471
|
+
'@jbrowse/core/util/leadingEdgeAutorun': m201,
|
|
472
|
+
'@jbrowse/core/util/legendCandidates': m202,
|
|
473
|
+
'@jbrowse/core/util/librpc': m203,
|
|
474
|
+
'@jbrowse/core/util/localStorage': m204,
|
|
475
|
+
'@jbrowse/core/util/makeAssembly': m205,
|
|
476
|
+
'@jbrowse/core/util/markEncoding': m206,
|
|
477
|
+
'@jbrowse/core/util/measureText': m207,
|
|
478
|
+
'@jbrowse/core/util/mst-reflection': m208,
|
|
479
|
+
'@jbrowse/core/util/mstUtils': m209,
|
|
480
|
+
'@jbrowse/core/util/nanoid': m210,
|
|
481
|
+
'@jbrowse/core/util/numericUtils': m211,
|
|
482
|
+
'@jbrowse/core/util/offscreenCanvasPonyfill': m212,
|
|
483
|
+
'@jbrowse/core/util/openViews': m213,
|
|
484
|
+
'@jbrowse/core/util/paintLayer': m214,
|
|
485
|
+
'@jbrowse/core/util/parseLineByLine': m215,
|
|
486
|
+
'@jbrowse/core/util/preloadComponent': m216,
|
|
487
|
+
'@jbrowse/core/util/progress': m217,
|
|
488
|
+
'@jbrowse/core/util/quantileExtent': m218,
|
|
489
|
+
'@jbrowse/core/util/range': m219,
|
|
490
|
+
'@jbrowse/core/util/renderToStaticMarkup': m220,
|
|
491
|
+
'@jbrowse/core/util/resolveRowHeight': m221,
|
|
492
|
+
'@jbrowse/core/util/rowStackGeometry': m222,
|
|
493
|
+
'@jbrowse/core/util/rxjs': m223,
|
|
494
|
+
'@jbrowse/core/util/sameStrings': m224,
|
|
495
|
+
'@jbrowse/core/util/samplesTsv': m225,
|
|
496
|
+
'@jbrowse/core/util/selectEncodedFeature': m226,
|
|
497
|
+
'@jbrowse/core/util/setStackTraceLimit': m227,
|
|
498
|
+
'@jbrowse/core/util/shapeNameList': m228,
|
|
499
|
+
'@jbrowse/core/util/shapeNames': m229,
|
|
500
|
+
'@jbrowse/core/util/simpleFeature': { ...m230, __esModule: true },
|
|
501
|
+
'@jbrowse/core/util/starFusion': m231,
|
|
502
|
+
'@jbrowse/core/util/stats': m232,
|
|
503
|
+
'@jbrowse/core/util/svAlt': m233,
|
|
504
|
+
'@jbrowse/core/util/SvgCanvas': m234,
|
|
505
|
+
'@jbrowse/core/util/svgColorProps': m235,
|
|
506
|
+
'@jbrowse/core/util/systemColorScheme': m236,
|
|
507
|
+
'@jbrowse/core/util/tabix': m237,
|
|
508
|
+
'@jbrowse/core/util/thresholdScale': m238,
|
|
509
|
+
'@jbrowse/core/util/tickLabels': m239,
|
|
510
|
+
'@jbrowse/core/util/TimeTraveller': m240.default,
|
|
511
|
+
'@jbrowse/core/util/tracks': m241,
|
|
512
|
+
'@jbrowse/core/util/translateTranscript': m242,
|
|
513
|
+
'@jbrowse/core/util/tss-react': m243,
|
|
514
|
+
'@jbrowse/core/util/tss-react/types': m244,
|
|
515
|
+
'@jbrowse/core/util/types': m245,
|
|
516
|
+
'@jbrowse/core/util/types/data': m246,
|
|
517
|
+
'@jbrowse/core/util/types/mst': m247,
|
|
518
|
+
'@jbrowse/core/util/unknownSnapshotKeys': m248,
|
|
519
|
+
'@jbrowse/core/util/unzip': m249,
|
|
520
|
+
'@jbrowse/core/util/useEventCallback': m250,
|
|
521
|
+
'@jbrowse/core/util/useFetch': m251,
|
|
522
|
+
'@jbrowse/core/util/useFetchPlugins': m252,
|
|
523
|
+
'@jbrowse/core/util/useMeasure': m253.default,
|
|
524
|
+
'@jbrowse/core/util/usePanelVirtualScroll': m254,
|
|
525
|
+
'@jbrowse/core/util/usePanZoom': m255,
|
|
526
|
+
'@jbrowse/core/util/usePointerDrag': m256,
|
|
527
|
+
'@jbrowse/core/util/useResizeDrag': m257,
|
|
528
|
+
'@jbrowse/core/util/useRowVirtualScroll': m258,
|
|
529
|
+
'@jbrowse/core/util/viewHighlights': m259,
|
|
530
|
+
'@jbrowse/core/util/viewStatus': m260,
|
|
531
|
+
'@jbrowse/core/util/virtualRange': m261,
|
|
532
|
+
'@jbrowse/core/util/wheelZoom': m262,
|
|
533
|
+
'@jbrowse/core/util/whenViewSettled': m263,
|
|
534
|
+
'@jbrowse/core/util/withLaunchInput': m264,
|
|
527
535
|
};
|
|
528
536
|
export default libs;
|