@jbrowse/core 5.0.0-beta.1 → 5.0.0-beta.3

package/esm/ReExports/modules.js

@@ -1,44 +1,17 @@
-// eslint-disable-next-line no-restricted-imports
-import * as React from 'react';
-import * as mst from '@jbrowse/mobx-state-tree';
 import { alpha, createTheme, useTheme } from '@mui/material';
 import SvgIcon, { createSvgIcon } from '@mui/material/SvgIcon';
 import * as MUIUtils from '@mui/material/utils';
-import * as mobx from 'mobx';
 import * as mxreact from 'mobx-react';
 import * as ReactDom from 'react-dom';
 import * as ReactDomClient from 'react-dom/client';
-import * as ReactJSXRuntime from 'react/jsx-runtime';
-import Plugin from '../Plugin.js';
-import * as Configuration from '../configuration/index.js';
-import * as BaseAdapterExports from '../data_adapters/BaseAdapter/index.js';
-import * as dataAdapterCache from '../data_adapters/dataAdapterCache.js';
-import AdapterType from '../pluggableElementTypes/AdapterType.js';
-import DisplayType from '../pluggableElementTypes/DisplayType.js';
-import TrackType from '../pluggableElementTypes/TrackType.js';
-import ViewType from '../pluggableElementTypes/ViewType.js';
-import WidgetType from '../pluggableElementTypes/WidgetType.js';
-import * as pluggableElementTypes from '../pluggableElementTypes/index.js';
-import * as pluggableElementTypeModels from '../pluggableElementTypes/models/index.js';
-import * as coreUi from '../ui/index.js';
-import * as corePalette from '../ui/palette.js';
-import * as coreTheme from '../ui/theme.js';
-import Base1DView from '../util/Base1DViewModel.js';
-import * as coreColor from '../util/color/index.js';
-import * as coreIo from '../util/io/index.js';
-import * as coreLayouts from '../util/layouts/index.js';
-import * as coreMstReflection from '../util/mst-reflection.js';
-import * as rxjs from '../util/rxjs.js';
-import * as trackUtils from '../util/tracks.js';
 import { cx, keyframes, makeStyles } from '../util/tss-react/index.js';
-import * as mstTypes from '../util/types/mst.js';
 import { BaseFeatureDetail } from './BaseFeatureDetails.js';
 import { DataGridEntries } from './MuiDataGridReExports.js';
 import { Entries } from './MuiReExports.js';
 import { MUIStyles } from './MuiStylesReExports.js';
 import { lazyMap } from './lazify.js';
-import reExportsList from './list.js';
-import * as coreUtil from './publicUtil.js';
+import * as coreUi from './publicUi.js';
+import { sharedModules } from './sharedModules.js';
 function makeLegacyMakeStyles() {
     return (args) => {
         const useStyles = makeStyles()(args);
@@ -47,15 +20,30 @@ function makeLegacyMakeStyles() {
 }
 const tssReact = { cx, keyframes, makeStyles };
 const legacyMakeStyles = makeLegacyMakeStyles();
+const materialUiCoreLib = {
+    ...lazyMap(Entries),
+    useTheme,
+    alpha,
+    makeStyles: legacyMakeStyles,
+};
+const muiMaterialLib = {
+    ...lazyMap(Entries),
+    alpha,
+    useTheme,
+    createTheme,
+};
+const materialUiLabLib = {
+    Alert: Entries.Alert,
+    Autocomplete: Entries.Autocomplete,
+    ToggleButton: Entries.ToggleButton,
+    ToggleButtonGroup: Entries.ToggleButtonGroup,
+};
+const muiStylesLib = { ...MUIStyles, makeStyles: legacyMakeStyles };
 const libs = {
-    mobx,
-    '@jbrowse/mobx-state-tree': mst,
-    'mobx-state-tree': mst,
-    react: React,
-    'react/jsx-runtime': ReactJSXRuntime,
+    ...sharedModules,
+    'mobx-react': mxreact,
     'react-dom': ReactDom,
     'react-dom/client': ReactDomClient,
-    'mobx-react': mxreact,
     // Only lazy component entries are re-exported. The grid *hooks*
     // (useGridApiContext/useGridApiRef/useGridRootProps) are intentionally left
     // out: statically importing them here pulled the entire ~1.2 MB
@@ -69,18 +57,8 @@ const libs = {
     '@material-ui/core/utils': MUIUtils,
     'tss-react': tssReact,
     'tss-react/mui': tssReact,
-    '@material-ui/core': {
-        ...lazyMap(Entries),
-        useTheme,
-        alpha,
-        makeStyles: legacyMakeStyles,
-    },
-    '@mui/material': {
-        ...lazyMap(Entries),
-        alpha,
-        useTheme,
-        createTheme,
-    },
+    '@material-ui/core': materialUiCoreLib,
+    '@mui/material': muiMaterialLib,
     ...lazyMap(Entries, '@mui/material/'),
     ...lazyMap(Entries, '@material-ui/core/'),
     // @mui/icons-material — bundled into external plugins — reads the
@@ -95,74 +73,18 @@ const libs = {
     // Overrides the lazy entry above; verified against both bundlers.
     // GMOD/jbrowse-components#5606.
     '@mui/material/SvgIcon': Object.assign({}, SvgIcon, { createSvgIcon }),
-    '@mui/material/styles': {
-        ...MUIStyles,
-        makeStyles: legacyMakeStyles,
-    },
-    '@material-ui/core/styles': {
-        ...MUIStyles,
-        makeStyles: legacyMakeStyles,
-    },
+    '@mui/material/styles': muiStylesLib,
+    '@material-ui/core/styles': muiStylesLib,
     // these are core in @mui/material, but used to be in @material-ui/lab
     '@material-ui/lab/ToggleButton': Entries.ToggleButton,
     '@material-ui/lab/ToggleButtonGroup': Entries.ToggleButtonGroup,
     '@material-ui/lab/Autocomplete': Entries.Autocomplete,
     '@material-ui/lab/Alert': Entries.Alert,
-    '@material-ui/lab': {
-        Alert: Entries.Alert,
-        Autocomplete: Entries.Autocomplete,
-        ToggleButton: Entries.ToggleButton,
-        ToggleButtonGroup: Entries.ToggleButtonGroup,
-    },
-    '@jbrowse/core/Plugin': Plugin,
-    '@jbrowse/core/configuration': Configuration,
-    '@jbrowse/core/util/types/mst': mstTypes,
+    '@material-ui/lab': materialUiLabLib,
     '@jbrowse/core/ui': coreUi,
-    '@jbrowse/core/ui/theme': coreTheme,
-    '@jbrowse/core/ui/palette': corePalette,
-    // BaseTooltip is deliberately absent from the '@jbrowse/core/ui' barrel: the
-    // re-export alone held @floating-ui (~266KB) on the startup path, since eager
-    // plugin entries import that barrel. Serving it as its own module behind
-    // React.lazy keeps it off that path while leaving external plugins a way to
-    // reach it -- published apollo deep-imports this exact path, and react-msaview
-    // (bundled by tview and msaview) reads it too, so dropping it from the barrel
-    // with no ABI home is what broke them.
-    ...lazyMap({ BaseTooltip: React.lazy(() => import('../ui/BaseTooltip.js')) }, '@jbrowse/core/ui/'),
-    '@jbrowse/core/util': coreUtil,
-    '@jbrowse/core/util/color': coreColor,
-    '@jbrowse/core/util/layouts': coreLayouts,
-    '@jbrowse/core/util/tracks': trackUtils,
-    '@jbrowse/core/util/Base1DViewModel': Base1DView,
-    '@jbrowse/core/util/io': coreIo,
-    '@jbrowse/core/util/mst-reflection': coreMstReflection,
-    '@jbrowse/core/util/rxjs': rxjs,
-    '@jbrowse/core/pluggableElementTypes': pluggableElementTypes,
-    '@jbrowse/core/pluggableElementTypes/ViewType': ViewType,
-    '@jbrowse/core/pluggableElementTypes/AdapterType': AdapterType,
-    '@jbrowse/core/pluggableElementTypes/DisplayType': DisplayType,
-    '@jbrowse/core/pluggableElementTypes/TrackType': TrackType,
-    '@jbrowse/core/pluggableElementTypes/WidgetType': WidgetType,
-    '@jbrowse/core/pluggableElementTypes/models': pluggableElementTypeModels,
+    // the same lazy component publicUi.tsx puts on the namespace; published
+    // react-msaview deep-imports this path, apollo reads the namespace
+    '@jbrowse/core/ui/BaseTooltip': coreUi.BaseTooltip,
     '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail': BaseFeatureDetail,
-    '@jbrowse/core/data_adapters/BaseAdapter': BaseAdapterExports,
-    // `adapterCache` is module-level state, so a plugin that bundles its own copy
-    // of this file gets a second cache in the RPC worker — and `freeAdapterResources`,
-    // which CoreFreeResources calls on the host's copy when the last track using
-    // an adapter config closes, never sees it. The cache is the only strong
-    // reference to an adapter (see the comment on that function), so those
-    // adapters and everything they hold live as long as the worker. Serving the
-    // module is what makes an external RPC method share the host's cache.
-    '@jbrowse/core/data_adapters/dataAdapterCache': dataAdapterCache,
 };
-const libsList = Object.keys(libs);
-// make sure that all the items in the ReExports/list array (used by build
-// systems and such) are included here, and vice versa
-const inLibsOnly = libsList.filter(mod => !reExportsList.includes(mod));
-if (inLibsOnly.length > 0) {
-    throw new Error(`The following modules are in the modules libs, but not the re-exports list: ${inLibsOnly.join(', ')}`);
-}
-const inReExportsOnly = reExportsList.filter(mod => !libsList.includes(mod));
-if (inReExportsOnly.length) {
-    throw new Error(`The following modules are in the re-exports list, but not the modules libs: ${inReExportsOnly.join(', ')}`);
-}
 export default libs;

package/esm/ReExports/publicTracks.d.ts

@@ -0,0 +1 @@
+export { UNKNOWN, UNSUPPORTED, addAdapterGuesser, addTrackTypeGuesser, allSessionTracks, annotationTrackIds, canonicalAssemblyNames, clearFileFromCache, ensureFileHandleReady, expandLooseTrackConfig, findFileHandleIds, generateUnknownTrackConf, generateUnsupportedTrackConf, getBlob, getBlobMap, getConfAssemblyNames, getConfAssemblyNamesOrNone, getFileFromCache, getFileName, getRpcSessionId, getTrackAssemblyNames, getTrackName, guessAdapter, guessTabixIndex, guessTrackConf, guessTrackConfForLocation, guessTrackType, hasFileHandlesInCache, hideTrackGeneric, isLooseTrackConfig, isSameAssemblyName, launchToggleTrackGeneric, launchTrackGeneric, makeIndex, makeIndexType, normalizeTrackInit, openAssemblyInLinearView, openMateLabel, pickDisplayForView, restoreFileHandles, restoreFileHandlesFromSnapshot, setBlobMap, setFileInCache, showTrackGeneric, storeBlobLocation, storeFileHandleLocation, stripFileExtension, stripTrackIds, toggleTrackGeneric, viewCanDisplayTrack, viewDisplayNames, } from '../util/tracks.ts';

package/esm/ReExports/publicTracks.js

@@ -0,0 +1,14 @@
+// The published `@jbrowse/core/util/tracks` module, listed by name. Same split,
+// and the same reasons, as publicUtil.ts: serving `import * as trackUtils from
+// '../util/tracks.ts'` made the external ABI a side effect of an internal
+// module, so moving a helper out of tracks.ts silently edited what plugins get.
+// `getParentRenderProps` left that way -- deleted as dead in-tree code, which it
+// was, while published apollo called it on three display models.
+//
+// Unlike publicUi.tsx this one is served in the RPC worker too (sharedModules.ts),
+// so it stays React-free; sharedModules.purity.test.ts fails on the graph, not
+// on this list.
+//
+// So: adding a line is how a helper becomes public, and it is a decision rather
+// than a side effect of where the code happens to live.
+export { UNKNOWN, UNSUPPORTED, addAdapterGuesser, addTrackTypeGuesser, allSessionTracks, annotationTrackIds, canonicalAssemblyNames, clearFileFromCache, ensureFileHandleReady, expandLooseTrackConfig, findFileHandleIds, generateUnknownTrackConf, generateUnsupportedTrackConf, getBlob, getBlobMap, getConfAssemblyNames, getConfAssemblyNamesOrNone, getFileFromCache, getFileName, getRpcSessionId, getTrackAssemblyNames, getTrackName, guessAdapter, guessTabixIndex, guessTrackConf, guessTrackConfForLocation, guessTrackType, hasFileHandlesInCache, hideTrackGeneric, isLooseTrackConfig, isSameAssemblyName, launchToggleTrackGeneric, launchTrackGeneric, makeIndex, makeIndexType, normalizeTrackInit, openAssemblyInLinearView, openMateLabel, pickDisplayForView, restoreFileHandles, restoreFileHandlesFromSnapshot, setBlobMap, setFileInCache, showTrackGeneric, storeBlobLocation, storeFileHandleLocation, stripFileExtension, stripTrackIds, toggleTrackGeneric, viewCanDisplayTrack, viewDisplayNames, } from '../util/tracks.js';

package/esm/ReExports/publicUi.d.ts

@@ -0,0 +1,4 @@
+import type { ComponentProps } from 'react';
+declare const LazyBaseTooltip: import("react").LazyExoticComponent<typeof import("../ui/BaseTooltip.tsx").default>;
+export declare function BaseTooltip(props: ComponentProps<typeof LazyBaseTooltip>): import("react").JSX.Element;
+export { ActionLink, AssemblySelector, BaseExportSvgDialog, CONTEXT_MENU_Z_INDEX, CascadingMenu, CascadingMenuButton, ConfirmDialog, ContextMenu, CopyToClipboardButton, Crosshairs, Dialog, EditableTypography, ErrorBanner, ErrorBar, ErrorMessage, ErrorOverlay, ExportSvgDialog, ExternalLink, FatalErrorDialog, FileDropZone, FileSelector, GRADIENT_LEGEND_HEIGHT, GRADIENT_LEGEND_SVG_AREA_WIDTH, GRADIENT_LEGEND_WIDTH, GpuFallbackButton, INLINE_MENU_ROW_WIDTH, InfoDialog, JexlFilterDialog, LAUNCH_LABEL, LEGEND_ROW_HEIGHT, LEGEND_SWATCH, LabeledCheckbox, LegendSwatchGlyph, LoadingEllipses, LoadingOverlay, LoadingProgress, LogoFull, Logomark, MAX_LEGEND_ITEMS, Menu, MonospaceTextField, NumberTextField, PinAdornment, PluggableComponent, PluggableComponents, PluggableElements, PrerenderedCanvas, ProgressChip, RefNameAutocomplete, RefNameAutocompleteEndAdornment, ReplaceCurrentViewButton, ResetToDefaultButton, ResizeHandle, SanitizedHTML, ScrollChrome, ScrollEdgeShadow, SettingsChangesTable, ShareLinkField, SingleSlider, SliderTooltip, StatusProgressBar, SubmitDialog, SubmitForm, SvgColorLegend, SvgGradientLegend, TOOLTIP_Z_INDEX, TagTextField, VIEW_HEADER_HEIGHT, VerticalScrollbar, ViewLoadingScreen, addExtensionElement, adornmentReservePx, checkboxItem, colorFwdStrand, colorInterchrom, colorLongInsert, colorLongreadInv, colorNeutralRead, colorPairLL, colorPairLR, colorPairLRDark, colorPairRL, colorPairRR, colorRevStrand, colorShortInsert, colorSplitReadInversion, colorSupplementary, colorUnmappedMate, colorUnmappedMateDark, createJBrowseBaseTheme, createJBrowseTheme, createJBrowseThemeFromArgs, defaultThemes, displayTypesWithPromotableSlots, getInputWidth, hoverBoxStyle, launchTargetsMenuItem, legendEntries, legendIsReadable, legendSwatches, makePromotableSizeMenu, makeSizeMenu, makeSizeSubMenu, matchesTrackSelector, measureLegendText, methylated5hmC, methylated5mC, misKindedPins, nonEmptyLegendSections, promotableSlotsWithoutPin, pushIntoSubMenu, pushLaunchViewMenuItem, radioItems, replaceViewAction, resolveSubMenu, sliderScale, staysOpenOnClick, tagColorPalette, unmethylated5mC, useAssemblySelection, useCopyToClipboard, useExportSvgPreference, useMouseState, useMouseTracking, useRecentLocations, wrapComponent, } from '../ui/index.ts';

package/esm/ReExports/publicUi.js

@@ -0,0 +1,33 @@
+import { jsx as _jsx } from "react/jsx-runtime";
+// The published `@jbrowse/core/ui` module, listed by name. Same split, and the
+// same reasons, as publicUtil.ts: an internal barrel and an external ABI want
+// opposite things, and serving `import * as coreUi from '../ui/index.ts'` made
+// the second a side effect of the first.
+//
+// That coupling has a second cost here that util does not have, and it is the
+// one that keeps biting: **removing a component from ui/index.ts is how this
+// codebase does lazy loading.** The barrel is imported by eagerly-evaluated
+// plugin entries, so a re-export of a heavy component holds it on the startup
+// path -- that is why BaseTooltip left (the line alone held ~266KB of
+// @floating-ui). With the ABI derived from the barrel, every such fix was also a
+// silent ABI removal. BaseTooltip's spent two releases missing from the served
+// namespace while apollo read it there.
+//
+// Splitting them makes those independent. Deleting an `export … from` line in
+// ui/index.ts now stops compiling here, so the ABI question is asked; and the
+// answer can be `lazy()`, since **this file may serve a component the barrel
+// does not export** -- see BaseTooltip below, which is exactly that. The eager
+// win and the plugin surface stop being the same edit.
+//
+// So: adding a line is how a component becomes public, and it is a decision
+// rather than a side effect of where the code happens to live.
+import { Suspense, lazy } from 'react';
+// Deliberately not re-exported by ui/index.ts -- see above. Served from its own
+// path too ('@jbrowse/core/ui/BaseTooltip', which published react-msaview uses),
+// and read off this namespace by published apollo; both spellings are this one
+// component, and neither puts @floating-ui on the startup path.
+const LazyBaseTooltip = lazy(() => import('../ui/BaseTooltip.js'));
+export function BaseTooltip(props) {
+    return (_jsx(Suspense, { fallback: null, children: _jsx(LazyBaseTooltip, { ...props }) }));
+}
+export { ActionLink, AssemblySelector, BaseExportSvgDialog, CONTEXT_MENU_Z_INDEX, CascadingMenu, CascadingMenuButton, ConfirmDialog, ContextMenu, CopyToClipboardButton, Crosshairs, Dialog, EditableTypography, ErrorBanner, ErrorBar, ErrorMessage, ErrorOverlay, ExportSvgDialog, ExternalLink, FatalErrorDialog, FileDropZone, FileSelector, GRADIENT_LEGEND_HEIGHT, GRADIENT_LEGEND_SVG_AREA_WIDTH, GRADIENT_LEGEND_WIDTH, GpuFallbackButton, INLINE_MENU_ROW_WIDTH, InfoDialog, JexlFilterDialog, LAUNCH_LABEL, LEGEND_ROW_HEIGHT, LEGEND_SWATCH, LabeledCheckbox, LegendSwatchGlyph, LoadingEllipses, LoadingOverlay, LoadingProgress, LogoFull, Logomark, MAX_LEGEND_ITEMS, Menu, MonospaceTextField, NumberTextField, PinAdornment, PluggableComponent, PluggableComponents, PluggableElements, PrerenderedCanvas, ProgressChip, RefNameAutocomplete, RefNameAutocompleteEndAdornment, ReplaceCurrentViewButton, ResetToDefaultButton, ResizeHandle, SanitizedHTML, ScrollChrome, ScrollEdgeShadow, SettingsChangesTable, ShareLinkField, SingleSlider, SliderTooltip, StatusProgressBar, SubmitDialog, SubmitForm, SvgColorLegend, SvgGradientLegend, TOOLTIP_Z_INDEX, TagTextField, VIEW_HEADER_HEIGHT, VerticalScrollbar, ViewLoadingScreen, addExtensionElement, adornmentReservePx, checkboxItem, colorFwdStrand, colorInterchrom, colorLongInsert, colorLongreadInv, colorNeutralRead, colorPairLL, colorPairLR, colorPairLRDark, colorPairRL, colorPairRR, colorRevStrand, colorShortInsert, colorSplitReadInversion, colorSupplementary, colorUnmappedMate, colorUnmappedMateDark, createJBrowseBaseTheme, createJBrowseTheme, createJBrowseThemeFromArgs, defaultThemes, displayTypesWithPromotableSlots, getInputWidth, hoverBoxStyle, launchTargetsMenuItem, legendEntries, legendIsReadable, legendSwatches, makePromotableSizeMenu, makeSizeMenu, makeSizeSubMenu, matchesTrackSelector, measureLegendText, methylated5hmC, methylated5mC, misKindedPins, nonEmptyLegendSections, promotableSlotsWithoutPin, pushIntoSubMenu, pushLaunchViewMenuItem, radioItems, replaceViewAction, resolveSubMenu, sliderScale, staysOpenOnClick, tagColorPalette, unmethylated5mC, useAssemblySelection, useCopyToClipboard, useExportSvgPreference, useMouseState, useMouseTracking, useRecentLocations, wrapComponent, } from '../ui/index.js';

package/esm/ReExports/publicUtil.d.ts

@@ -1 +1 @@
-export { AuthNeededError, BEZIER_CONNECTOR_MAX_REACH_PX, ENCODED_PREFIX, IUPAC_MOTIF_REGEX, IntervalTree, JSON_PREFIX, MAX_ZOOM_RATE_PER_MS, SCROLL_ZOOM_FACTOR_DIVISOR, SHARE_PREFIX, SimpleFeature, UNKNOWN, UNSUPPORTED, UnknownRefNameError, ZOOM_ACTIVE_WINDOW_MS, accumulateScroll, adapterConfigFromSpec, addAdapterGuesser, addAddTrackComponent, addAndShowTrack, addOrReplaceView, addTrackFromWidget, addTrackTypeGuesser, aesDecrypt, aesEncrypt, animationAllowed, applyOrderWithin, applyZoomAccum, assembleLocString, assembleLocStringRaw, avg, b64PadSuffix, bezierConnectorPath, bpSpanPx, bpToPx, bytesForRegions, calculateRedispatchRange, canReplaceView, capitalizeFirst, checkStopToken, checkStopTokenThrottled, clamp, clearFileFromCache, cmpStr, coarseStripHTML, codonTable, compareLocStrings, compareLocs, complement, complementTable, createProgressReporter, createScrollLatch, createSharedSetup, createStatusChannel, createStatusFanOut, createStatusWindow, createStopToken, createStopTokenChecker, createStopTokenRotation, dedupe, defaultCodonTable, defaultStarts, diagonalizeRegions, diffTrackConfig, doesIntersect2, downloadStatus, drawImageOntoCanvasContext, encodeSessionParam, ensureFileHandleReady, expandLooseTrackConfig, featureSpanPx, fetchAndMaybeUnzip, fetchAndMaybeUnzipText, fetchJson, fileToLocation, findFileHandleIds, findParentThat, findParentThatIs, flattenTrackConfigDelta, formatRelativeTime, fromUrlSafeB64, gatherOverlaps, generateCodonTable, generateUnknownTrackConf, generateUnsupportedTrackConf, getAssemblyHost, getBlob, getBlobMap, getBpDisplayStr, getConfAssemblyNames, getContainingDisplay, getContainingTrack, getContainingView, getDialogHost, getEnv, getFileFromCache, getFileHandle, getFileName, getFillProps, getFrame, getNotificationSink, getNumberGrouping, getPaletteHost, getPluginUpdate, getRenderingServices, getRpcHost, getRpcSessionId, getSession, getSessionServices, getStr, getStrokeProps, getTickDisplayStr, getTrackAssemblyNames, getTrackName, getZoomNormalizer, groupBy, guessAdapter, guessTrackConf, guessTrackType, hasFileHandlesInCache, hasSharedArrayBuffer, hashCode, hideTrackGeneric, installedVersionFromUrl, intersection2, isAbortException, isAbstractMenuManager, isActivelyZooming, isAppRootModel, isAuthNeededException, isBlobLocation, isDataCurrent, isDisplayModel, isElectron, isFeature, isFileHandleLocation, isFileSystemAccessSupported, isGzip, isLocalPathLocation, isLooseTrackConfig, isNode, isObject, isPalindromic, isPluginInstalled, isRootModelWithInternetAccounts, isRpcResult, isSelectionContainer, isSessionModel, isSessionServices, isSessionModelWithConfigEditing, isSessionModelWithConnectionEditing, isSessionModelWithConnections, isSessionModelWithWidgets, isSessionWithAddAssembly, isSessionWithAddSessionTrack, isSessionWithAddTracks, isSessionWithPublishTrackConf, isSessionWithDeleteTrackConf, isSessionWithSessionPlugins, isSessionWithSessionTracks, isSessionWithShareURL, isSessionWithViewReplacement, isStopToken, isStopped, isSupportedIndexingAdapter, isTrackModel, isTrackViewModel, isUriLocation, isValidTag, isViewContainer, isViewModel, iupacToRegex, linkify, locStringsToRegions, localStorageGetBoolean, localStorageGetItem, localStorageGetJSON, localStorageGetNumber, localStorageRemoveItem, localStorageSetBoolean, localStorageSetItem, localStorageSetJSON, localStorageSetNumber, makeAbortError, makeIndex, makeIndexType, makeTrackId, markStopTokenStopped, matchTrackId, max, maxFinite, measureGridWidth, measureText, mergeIntervals, mergeTrackConfig, min, minmax, normalizeWheelDelta, notEmpty, objectHash, openFeatureWidget, openPromotableDisplays, parseLocString, parseLocStringOneBased, parseMotifList, pluralize, polarToCartesian, progressLabel, rIC, radToDeg, readSessionFromDynamo, reducePrecision, registerStopTokenBroadcaster, renameRegionIfNeeded, renameRegionsIfNeeded, renderToStaticMarkup, reorder, reorderWithin, resolvePlugin, resolveSelectedIds, restoreFileHandles, restoreFileHandlesFromSnapshot, revcom, reverse, reverseComplementIupac, revlist, saveAs, saveSvgAsImage, selectNamedRegions, setBlobMap, setFileInCache, setNumberGrouping, sha256, sha256Base64, sha256Base64Url, shareEndpoint, shorten, shorten2, showTrackGeneric, springAnimate, statusFraction, statusMessageText, statusProgressLabel, statusReading, stitch, stopStopToken, stopTokenSignal, storeBlobLocation, storeFileHandle, storeFileHandleLocation, stringify, stripAlpha, stripFileExtension, stripTrackIds, sum, svgHtmlToPngBlob, tagRegex, testAdapter, toBase64, toBase64Url, toLocale, toUrlSafeB64, toggleTrackGeneric, truncateMiddle, updateStatus, useDebounce, useLocalStorage, useWidthSetter, verifyPermission, wheelFrameElapsedMs, wheelZoomAccum, withProgress, withStopTokenCheck, withStopTokenSignal, } from '../util/index.ts';
+export { AuthNeededError, BEZIER_CONNECTOR_MAX_REACH_PX, ENCODED_PREFIX, IUPAC_MOTIF_REGEX, IntervalTree, JSON_PREFIX, MAX_ZOOM_RATE_PER_MS, SCROLL_ZOOM_FACTOR_DIVISOR, SHARE_PREFIX, SimpleFeature, UNKNOWN, UNSUPPORTED, UnknownRefNameError, ZOOM_ACTIVE_WINDOW_MS, accumulateScroll, adapterConfigFromSpec, addAdapterGuesser, addAddTrackComponent, addAndShowTrack, addOrReplaceView, addTrackFromWidget, addTrackTypeGuesser, aesDecrypt, aesEncrypt, animationAllowed, applyOrderWithin, applyZoomAccum, assembleLocString, assembleLocStringRaw, avg, b64PadSuffix, bezierConnectorPath, bpSpanPx, bpToPx, bytesForRegions, calculateRedispatchRange, canReplaceView, capitalizeFirst, checkStopToken, checkStopTokenThrottled, clamp, clearFileFromCache, cmpStr, coarseStripHTML, codonTable, compareLocStrings, compareLocs, complement, complementTable, createProgressReporter, createScrollLatch, createSharedSetup, createStatusChannel, createStatusFanOut, createStatusWindow, createStopToken, createStopTokenChecker, createStopTokenRotation, dedupe, defaultCodonTable, defaultStarts, diagonalizeRegions, diffTrackConfig, doesIntersect2, downloadStatus, drawImageOntoCanvasContext, encodeSessionParam, ensureFileHandleReady, expandLooseTrackConfig, featureSpanPx, fetchAndMaybeUnzip, fetchAndMaybeUnzipText, fetchJson, fileToLocation, findFileHandleIds, findParentThat, findParentThatIs, flattenTrackConfigDelta, formatRelativeTime, fromUrlSafeB64, gatherOverlaps, generateCodonTable, generateUnknownTrackConf, generateUnsupportedTrackConf, getAssemblyHost, getBlob, getBlobMap, getBpDisplayStr, getConfAssemblyNames, getContainingDisplay, getContainingTrack, getContainingView, getDialogHost, getEnv, launchOrReplaceView, getFileFromCache, getFileHandle, getFileName, getFillProps, getFrame, getNotificationSink, getNumberGrouping, getPaletteHost, getPluginUpdate, getRenderingServices, getRpcHost, getRpcSessionId, getSession, getSessionServices, getStr, getStrokeProps, getTickDisplayStr, getTrackAssemblyNames, getTrackName, getZoomNormalizer, groupBy, guessAdapter, guessTrackConf, guessTrackType, hasFileHandlesInCache, hasSharedArrayBuffer, hashCode, hideTrackGeneric, installedVersionFromUrl, intersection2, isAbortException, isAbstractMenuManager, isActivelyZooming, isAppRootModel, isAuthNeededException, isBlobLocation, isDataCurrent, isDisplayModel, isElectron, isFeature, isFileHandleLocation, isFileSystemAccessSupported, isGeneLikeType, isGzip, isLocalPathLocation, isLooseTrackConfig, isNode, isObject, isPalindromic, isPluginInstalled, isRootModelWithInternetAccounts, isRpcResult, isSelectionContainer, isSequenceMatchType, isSessionModel, isSessionServices, isSessionModelWithConfigEditing, isSessionModelWithConnectionEditing, isSessionModelWithConnections, isSessionModelWithWidgets, isSessionWithAddAssembly, isSessionWithAddSessionTrack, isSessionWithAddTracks, isSessionWithPublishTrackConf, isSessionWithDeleteTrackConf, isSessionWithSessionPlugins, isSessionWithSessionTracks, isSessionWithShareURL, isSessionWithViewReplacement, isStopToken, isStopped, isSupportedIndexingAdapter, isTrackModel, isTrackViewModel, isUriLocation, isValidTag, isViewContainer, isViewModel, iupacToRegex, linkify, locStringsToRegions, localStorageGetBoolean, localStorageGetItem, localStorageGetJSON, localStorageGetNumber, localStorageRemoveItem, localStorageSetBoolean, localStorageSetItem, localStorageSetJSON, localStorageSetNumber, makeAbortError, makeIndex, makeIndexType, makeTrackId, markStopTokenStopped, matchTrackId, max, maxFinite, measureGridWidth, measureText, mergeIntervals, mergeTrackConfig, min, minmax, normalizeWheelDelta, notEmpty, objectHash, openFeatureWidget, openPromotableDisplays, parseLocString, parseLocStringOneBased, parseMotifList, pluralize, polarToCartesian, progressLabel, rIC, radToDeg, readSessionFromDynamo, reducePrecision, registerStopTokenBroadcaster, renameRegionIfNeeded, renameRegionsIfNeeded, reorder, reorderWithin, resolvePlugin, resolveSelectedIds, restoreFileHandles, restoreFileHandlesFromSnapshot, revcom, reverse, reverseComplementIupac, revlist, saveAs, scheduleDetachedDestroy, saveSvgAsImage, selectNamedRegions, setBlobMap, setFileInCache, setNumberGrouping, sha256, sha256Base64, sha256Base64Url, shareEndpoint, shorten, shorten2, showTrackGeneric, springAnimate, statusFraction, statusMessageText, statusProgressLabel, statusReading, stitch, stopStopToken, stopTokenSignal, storeBlobLocation, storeFileHandle, storeFileHandleLocation, stringify, stripAlpha, stripFileExtension, stripTrackIds, sum, svgHtmlToPngBlob, tagRegex, testAdapter, toBase64, toBase64Url, toLocale, toUrlSafeB64, toggleTrackGeneric, truncateMiddle, updateStatus, useDebounce, useLocalStorage, useWidthSetter, verifyPermission, wheelFrameElapsedMs, wheelZoomAccum, withProgress, withStopTokenCheck, withStopTokenSignal, } from '../util/index.ts';

package/esm/ReExports/publicUtil.js

@@ -22,7 +22,11 @@
 // by the time this was written. A list that has to be edited by hand cannot
 // drift that way.
 //
-// The same split is worth making for '@jbrowse/core/ui' (115 pinned names) and
-// '@jbrowse/core/util/tracks' (36), which have the same shape and the same
-// history: BaseTooltip and getParentRenderProps each left this way.
-export { AuthNeededError, BEZIER_CONNECTOR_MAX_REACH_PX, ENCODED_PREFIX, IUPAC_MOTIF_REGEX, IntervalTree, JSON_PREFIX, MAX_ZOOM_RATE_PER_MS, SCROLL_ZOOM_FACTOR_DIVISOR, SHARE_PREFIX, SimpleFeature, UNKNOWN, UNSUPPORTED, UnknownRefNameError, ZOOM_ACTIVE_WINDOW_MS, accumulateScroll, adapterConfigFromSpec, addAdapterGuesser, addAddTrackComponent, addAndShowTrack, addOrReplaceView, addTrackFromWidget, addTrackTypeGuesser, aesDecrypt, aesEncrypt, animationAllowed, applyOrderWithin, applyZoomAccum, assembleLocString, assembleLocStringRaw, avg, b64PadSuffix, bezierConnectorPath, bpSpanPx, bpToPx, bytesForRegions, calculateRedispatchRange, canReplaceView, capitalizeFirst, checkStopToken, checkStopTokenThrottled, clamp, clearFileFromCache, cmpStr, coarseStripHTML, codonTable, compareLocStrings, compareLocs, complement, complementTable, createProgressReporter, createScrollLatch, createSharedSetup, createStatusChannel, createStatusFanOut, createStatusWindow, createStopToken, createStopTokenChecker, createStopTokenRotation, dedupe, defaultCodonTable, defaultStarts, diagonalizeRegions, diffTrackConfig, doesIntersect2, downloadStatus, drawImageOntoCanvasContext, encodeSessionParam, ensureFileHandleReady, expandLooseTrackConfig, featureSpanPx, fetchAndMaybeUnzip, fetchAndMaybeUnzipText, fetchJson, fileToLocation, findFileHandleIds, findParentThat, findParentThatIs, flattenTrackConfigDelta, formatRelativeTime, fromUrlSafeB64, gatherOverlaps, generateCodonTable, generateUnknownTrackConf, generateUnsupportedTrackConf, getAssemblyHost, getBlob, getBlobMap, getBpDisplayStr, getConfAssemblyNames, getContainingDisplay, getContainingTrack, getContainingView, getDialogHost, getEnv, getFileFromCache, getFileHandle, getFileName, getFillProps, getFrame, getNotificationSink, getNumberGrouping, getPaletteHost, getPluginUpdate, getRenderingServices, getRpcHost, getRpcSessionId, getSession, getSessionServices, getStr, getStrokeProps, getTickDisplayStr, getTrackAssemblyNames, getTrackName, getZoomNormalizer, groupBy, guessAdapter, guessTrackConf, guessTrackType, hasFileHandlesInCache, hasSharedArrayBuffer, hashCode, hideTrackGeneric, installedVersionFromUrl, intersection2, isAbortException, isAbstractMenuManager, isActivelyZooming, isAppRootModel, isAuthNeededException, isBlobLocation, isDataCurrent, isDisplayModel, isElectron, isFeature, isFileHandleLocation, isFileSystemAccessSupported, isGzip, isLocalPathLocation, isLooseTrackConfig, isNode, isObject, isPalindromic, isPluginInstalled, isRootModelWithInternetAccounts, isRpcResult, isSelectionContainer, isSessionModel, isSessionServices, isSessionModelWithConfigEditing, isSessionModelWithConnectionEditing, isSessionModelWithConnections, isSessionModelWithWidgets, isSessionWithAddAssembly, isSessionWithAddSessionTrack, isSessionWithAddTracks, isSessionWithPublishTrackConf, isSessionWithDeleteTrackConf, isSessionWithSessionPlugins, isSessionWithSessionTracks, isSessionWithShareURL, isSessionWithViewReplacement, isStopToken, isStopped, isSupportedIndexingAdapter, isTrackModel, isTrackViewModel, isUriLocation, isValidTag, isViewContainer, isViewModel, iupacToRegex, linkify, locStringsToRegions, localStorageGetBoolean, localStorageGetItem, localStorageGetJSON, localStorageGetNumber, localStorageRemoveItem, localStorageSetBoolean, localStorageSetItem, localStorageSetJSON, localStorageSetNumber, makeAbortError, makeIndex, makeIndexType, makeTrackId, markStopTokenStopped, matchTrackId, max, maxFinite, measureGridWidth, measureText, mergeIntervals, mergeTrackConfig, min, minmax, normalizeWheelDelta, notEmpty, objectHash, openFeatureWidget, openPromotableDisplays, parseLocString, parseLocStringOneBased, parseMotifList, pluralize, polarToCartesian, progressLabel, rIC, radToDeg, readSessionFromDynamo, reducePrecision, registerStopTokenBroadcaster, renameRegionIfNeeded, renameRegionsIfNeeded, renderToStaticMarkup, reorder, reorderWithin, resolvePlugin, resolveSelectedIds, restoreFileHandles, restoreFileHandlesFromSnapshot, revcom, reverse, reverseComplementIupac, revlist, saveAs, saveSvgAsImage, selectNamedRegions, setBlobMap, setFileInCache, setNumberGrouping, sha256, sha256Base64, sha256Base64Url, shareEndpoint, shorten, shorten2, showTrackGeneric, springAnimate, statusFraction, statusMessageText, statusProgressLabel, statusReading, stitch, stopStopToken, stopTokenSignal, storeBlobLocation, storeFileHandle, storeFileHandleLocation, stringify, stripAlpha, stripFileExtension, stripTrackIds, sum, svgHtmlToPngBlob, tagRegex, testAdapter, toBase64, toBase64Url, toLocale, toUrlSafeB64, toggleTrackGeneric, truncateMiddle, updateStatus, useDebounce, useLocalStorage, useWidthSetter, verifyPermission, wheelFrameElapsedMs, wheelZoomAccum, withProgress, withStopTokenCheck, withStopTokenSignal, } from '../util/index.js';
+// '@jbrowse/core/ui' (publicUi.tsx, 128) and '@jbrowse/core/util/tracks'
+// (publicTracks.ts, 51) are split the same way now, and each had already lost a
+// name to the coupling: BaseTooltip and getParentRenderProps. publicUi.tsx also
+// carries the part this file has no use for -- an ABI file may serve a component
+// its barrel does not export, behind lazy(). That is what makes "take it out of
+// the barrel so it leaves the startup path" a different edit from "stop serving
+// it to plugins", which here they were not.
+export { AuthNeededError, BEZIER_CONNECTOR_MAX_REACH_PX, ENCODED_PREFIX, IUPAC_MOTIF_REGEX, IntervalTree, JSON_PREFIX, MAX_ZOOM_RATE_PER_MS, SCROLL_ZOOM_FACTOR_DIVISOR, SHARE_PREFIX, SimpleFeature, UNKNOWN, UNSUPPORTED, UnknownRefNameError, ZOOM_ACTIVE_WINDOW_MS, accumulateScroll, adapterConfigFromSpec, addAdapterGuesser, addAddTrackComponent, addAndShowTrack, addOrReplaceView, addTrackFromWidget, addTrackTypeGuesser, aesDecrypt, aesEncrypt, animationAllowed, applyOrderWithin, applyZoomAccum, assembleLocString, assembleLocStringRaw, avg, b64PadSuffix, bezierConnectorPath, bpSpanPx, bpToPx, bytesForRegions, calculateRedispatchRange, canReplaceView, capitalizeFirst, checkStopToken, checkStopTokenThrottled, clamp, clearFileFromCache, cmpStr, coarseStripHTML, codonTable, compareLocStrings, compareLocs, complement, complementTable, createProgressReporter, createScrollLatch, createSharedSetup, createStatusChannel, createStatusFanOut, createStatusWindow, createStopToken, createStopTokenChecker, createStopTokenRotation, dedupe, defaultCodonTable, defaultStarts, diagonalizeRegions, diffTrackConfig, doesIntersect2, downloadStatus, drawImageOntoCanvasContext, encodeSessionParam, ensureFileHandleReady, expandLooseTrackConfig, featureSpanPx, fetchAndMaybeUnzip, fetchAndMaybeUnzipText, fetchJson, fileToLocation, findFileHandleIds, findParentThat, findParentThatIs, flattenTrackConfigDelta, formatRelativeTime, fromUrlSafeB64, gatherOverlaps, generateCodonTable, generateUnknownTrackConf, generateUnsupportedTrackConf, getAssemblyHost, getBlob, getBlobMap, getBpDisplayStr, getConfAssemblyNames, getContainingDisplay, getContainingTrack, getContainingView, getDialogHost, getEnv, launchOrReplaceView, getFileFromCache, getFileHandle, getFileName, getFillProps, getFrame, getNotificationSink, getNumberGrouping, getPaletteHost, getPluginUpdate, getRenderingServices, getRpcHost, getRpcSessionId, getSession, getSessionServices, getStr, getStrokeProps, getTickDisplayStr, getTrackAssemblyNames, getTrackName, getZoomNormalizer, groupBy, guessAdapter, guessTrackConf, guessTrackType, hasFileHandlesInCache, hasSharedArrayBuffer, hashCode, hideTrackGeneric, installedVersionFromUrl, intersection2, isAbortException, isAbstractMenuManager, isActivelyZooming, isAppRootModel, isAuthNeededException, isBlobLocation, isDataCurrent, isDisplayModel, isElectron, isFeature, isFileHandleLocation, isFileSystemAccessSupported, isGeneLikeType, isGzip, isLocalPathLocation, isLooseTrackConfig, isNode, isObject, isPalindromic, isPluginInstalled, isRootModelWithInternetAccounts, isRpcResult, isSelectionContainer, isSequenceMatchType, isSessionModel, isSessionServices, isSessionModelWithConfigEditing, isSessionModelWithConnectionEditing, isSessionModelWithConnections, isSessionModelWithWidgets, isSessionWithAddAssembly, isSessionWithAddSessionTrack, isSessionWithAddTracks, isSessionWithPublishTrackConf, isSessionWithDeleteTrackConf, isSessionWithSessionPlugins, isSessionWithSessionTracks, isSessionWithShareURL, isSessionWithViewReplacement, isStopToken, isStopped, isSupportedIndexingAdapter, isTrackModel, isTrackViewModel, isUriLocation, isValidTag, isViewContainer, isViewModel, iupacToRegex, linkify, locStringsToRegions, localStorageGetBoolean, localStorageGetItem, localStorageGetJSON, localStorageGetNumber, localStorageRemoveItem, localStorageSetBoolean, localStorageSetItem, localStorageSetJSON, localStorageSetNumber, makeAbortError, makeIndex, makeIndexType, makeTrackId, markStopTokenStopped, matchTrackId, max, maxFinite, measureGridWidth, measureText, mergeIntervals, mergeTrackConfig, min, minmax, normalizeWheelDelta, notEmpty, objectHash, openFeatureWidget, openPromotableDisplays, parseLocString, parseLocStringOneBased, parseMotifList, pluralize, polarToCartesian, progressLabel, rIC, radToDeg, readSessionFromDynamo, reducePrecision, registerStopTokenBroadcaster, renameRegionIfNeeded, renameRegionsIfNeeded, reorder, reorderWithin, resolvePlugin, resolveSelectedIds, restoreFileHandles, restoreFileHandlesFromSnapshot, revcom, reverse, reverseComplementIupac, revlist, saveAs, scheduleDetachedDestroy, saveSvgAsImage, selectNamedRegions, setBlobMap, setFileInCache, setNumberGrouping, sha256, sha256Base64, sha256Base64Url, shareEndpoint, shorten, shorten2, showTrackGeneric, springAnimate, statusFraction, statusMessageText, statusProgressLabel, statusReading, stitch, stopStopToken, stopTokenSignal, storeBlobLocation, storeFileHandle, storeFileHandleLocation, stringify, stripAlpha, stripFileExtension, stripTrackIds, sum, svgHtmlToPngBlob, tagRegex, testAdapter, toBase64, toBase64Url, toLocale, toUrlSafeB64, toggleTrackGeneric, truncateMiddle, updateStatus, useDebounce, useLocalStorage, useWidthSetter, verifyPermission, wheelFrameElapsedMs, wheelZoomAccum, withProgress, withStopTokenCheck, withStopTokenSignal, } from '../util/index.js';

package/esm/ReExports/sharedModules.d.ts

@@ -0,0 +1,96 @@
+import * as React from 'react';
+import * as mst from '@jbrowse/mobx-state-tree';
+import * as mobx from 'mobx';
+import * as ReactJSXRuntime from 'react/jsx-runtime';
+import Plugin from '../Plugin.ts';
+import * as Configuration from '../configuration/index.ts';
+import * as BaseAdapterExports from '../data_adapters/BaseAdapter/index.ts';
+import * as dataAdapterCache from '../data_adapters/dataAdapterCache.ts';
+import AdapterType from '../pluggableElementTypes/AdapterType.ts';
+import DisplayType from '../pluggableElementTypes/DisplayType.ts';
+import TrackType from '../pluggableElementTypes/TrackType.ts';
+import ViewType from '../pluggableElementTypes/ViewType.ts';
+import WidgetType from '../pluggableElementTypes/WidgetType.ts';
+import * as pluggableElementTypes from '../pluggableElementTypes/index.ts';
+import * as pluggableElementTypeModels from '../pluggableElementTypes/models/index.ts';
+import * as corePalette from '../ui/palette.ts';
+import * as coreTheme from '../ui/theme.ts';
+import * as coreColor from '../util/color/index.ts';
+import * as coreIo from '../util/io/index.ts';
+import * as coreLayouts from '../util/layouts/index.ts';
+import * as coreMstReflection from '../util/mst-reflection.ts';
+import * as rxjs from '../util/rxjs.ts';
+import * as mstTypes from '../util/types/mst.ts';
+import * as trackUtils from './publicTracks.ts';
+import * as coreUtil from './publicUtil.ts';
+export declare const sharedModules: {
+    mobx: typeof mobx;
+    '@jbrowse/mobx-state-tree': typeof mst;
+    'mobx-state-tree': typeof mst;
+    react: typeof React;
+    'react/jsx-runtime': typeof ReactJSXRuntime;
+    '@jbrowse/core/Plugin': typeof Plugin;
+    '@jbrowse/core/configuration': typeof Configuration;
+    '@jbrowse/core/util/types/mst': typeof mstTypes;
+    '@jbrowse/core/ui/theme': typeof coreTheme;
+    '@jbrowse/core/ui/palette': typeof corePalette;
+    '@jbrowse/core/util': typeof coreUtil;
+    '@jbrowse/core/util/color': typeof coreColor;
+    '@jbrowse/core/util/layouts': typeof coreLayouts;
+    '@jbrowse/core/util/tracks': typeof trackUtils;
+    '@jbrowse/core/util/Base1DViewModel': mst.IModelType<{
+        id: mst.IOptionalIType<mst.ISimpleType<string>, [undefined]>;
+        displayedRegions: mst.IOptionalIType<mst.IType<import("../util/index.ts").Region[], import("../util/index.ts").Region[], import("../util/index.ts").Region[]>, [undefined]>;
+        bpPerPx: mst.IType<number | undefined, number, number>;
+        offsetPx: mst.IType<number | undefined, number, number>;
+        minimumBlockWidth: mst.IOptionalIType<mst.ISimpleType<number>, [undefined]>;
+    }, {
+        volatileWidth: number;
+    } & {
+        setDisplayedRegions(regions: import("../util/index.ts").Region[]): void;
+        setBpPerPx(val: number): void;
+        setVolatileWidth(width: number): void;
+    } & {
+        readonly width: number;
+        readonly minBpPerPx: number;
+        readonly maxBpPerPx: number;
+        readonly assemblyNames: string[];
+        readonly displayedRegionsTotalPx: number;
+        readonly maxOffset: number;
+        readonly minOffset: number;
+        readonly totalBp: number;
+    } & {
+        readonly dynamicBlocks: import("../util/blockTypes.ts").BlockSet;
+        readonly staticBlocks: import("../util/blockTypes.ts").BlockSet;
+        readonly currBp: number;
+    } & {
+        pxToBp(px: number): import("../util/Base1DUtils.ts").PxToBpResult;
+        bpToPx(args: {
+            refName: string;
+            coord: number;
+            displayedRegionIndex?: number;
+        }): number | undefined;
+    } & {
+        showAllRegions(): void;
+        zoomOut(): void;
+        zoomIn(): void;
+        zoomTo(bpPerPx: number, offset?: any): number;
+        scrollTo(offsetPx: number): number;
+        centerAt(coord: number, refName: string | undefined, displayedRegionIndex: number): void;
+        scroll(distance: number): number;
+    } & {
+        moveTo(start?: import("../util/Base1DUtils.ts").BpOffset, end?: import("../util/Base1DUtils.ts").BpOffset): void;
+    }, mst._NotCustomized, mst._NotCustomized>;
+    '@jbrowse/core/util/io': typeof coreIo;
+    '@jbrowse/core/util/mst-reflection': typeof coreMstReflection;
+    '@jbrowse/core/util/rxjs': typeof rxjs;
+    '@jbrowse/core/pluggableElementTypes': typeof pluggableElementTypes;
+    '@jbrowse/core/pluggableElementTypes/ViewType': typeof ViewType;
+    '@jbrowse/core/pluggableElementTypes/AdapterType': typeof AdapterType;
+    '@jbrowse/core/pluggableElementTypes/DisplayType': typeof DisplayType;
+    '@jbrowse/core/pluggableElementTypes/TrackType': typeof TrackType;
+    '@jbrowse/core/pluggableElementTypes/WidgetType': typeof WidgetType;
+    '@jbrowse/core/pluggableElementTypes/models': typeof pluggableElementTypeModels;
+    '@jbrowse/core/data_adapters/BaseAdapter': typeof BaseAdapterExports;
+    '@jbrowse/core/data_adapters/dataAdapterCache': typeof dataAdapterCache;
+};

package/esm/ReExports/sharedModules.js

@@ -0,0 +1,66 @@
+// eslint-disable-next-line no-restricted-imports
+import * as React from 'react';
+import * as mst from '@jbrowse/mobx-state-tree';
+import * as mobx from 'mobx';
+import * as ReactJSXRuntime from 'react/jsx-runtime';
+import Plugin from '../Plugin.js';
+import * as Configuration from '../configuration/index.js';
+import * as BaseAdapterExports from '../data_adapters/BaseAdapter/index.js';
+import * as dataAdapterCache from '../data_adapters/dataAdapterCache.js';
+import AdapterType from '../pluggableElementTypes/AdapterType.js';
+import DisplayType from '../pluggableElementTypes/DisplayType.js';
+import TrackType from '../pluggableElementTypes/TrackType.js';
+import ViewType from '../pluggableElementTypes/ViewType.js';
+import WidgetType from '../pluggableElementTypes/WidgetType.js';
+import * as pluggableElementTypes from '../pluggableElementTypes/index.js';
+import * as pluggableElementTypeModels from '../pluggableElementTypes/models/index.js';
+import * as corePalette from '../ui/palette.js';
+import * as coreTheme from '../ui/theme.js';
+import Base1DView from '../util/Base1DViewModel.js';
+import * as coreColor from '../util/color/index.js';
+import * as coreIo from '../util/io/index.js';
+import * as coreLayouts from '../util/layouts/index.js';
+import * as coreMstReflection from '../util/mst-reflection.js';
+import * as rxjs from '../util/rxjs.js';
+import * as mstTypes from '../util/types/mst.js';
+import * as trackUtils from './publicTracks.js';
+import * as coreUtil from './publicUtil.js';
+// The part of the runtime plugin ABI that is not UI: what a plugin evaluated in
+// the RPC worker can actually use. modules.ts adds the UI on top of it for the
+// main thread; workerModules.ts fills the same keys with a stub instead.
+export const sharedModules = {
+    mobx,
+    '@jbrowse/mobx-state-tree': mst,
+    'mobx-state-tree': mst,
+    react: React,
+    'react/jsx-runtime': ReactJSXRuntime,
+    '@jbrowse/core/Plugin': Plugin,
+    '@jbrowse/core/configuration': Configuration,
+    '@jbrowse/core/util/types/mst': mstTypes,
+    '@jbrowse/core/ui/theme': coreTheme,
+    '@jbrowse/core/ui/palette': corePalette,
+    '@jbrowse/core/util': coreUtil,
+    '@jbrowse/core/util/color': coreColor,
+    '@jbrowse/core/util/layouts': coreLayouts,
+    '@jbrowse/core/util/tracks': trackUtils,
+    '@jbrowse/core/util/Base1DViewModel': Base1DView,
+    '@jbrowse/core/util/io': coreIo,
+    '@jbrowse/core/util/mst-reflection': coreMstReflection,
+    '@jbrowse/core/util/rxjs': rxjs,
+    '@jbrowse/core/pluggableElementTypes': pluggableElementTypes,
+    '@jbrowse/core/pluggableElementTypes/ViewType': ViewType,
+    '@jbrowse/core/pluggableElementTypes/AdapterType': AdapterType,
+    '@jbrowse/core/pluggableElementTypes/DisplayType': DisplayType,
+    '@jbrowse/core/pluggableElementTypes/TrackType': TrackType,
+    '@jbrowse/core/pluggableElementTypes/WidgetType': WidgetType,
+    '@jbrowse/core/pluggableElementTypes/models': pluggableElementTypeModels,
+    '@jbrowse/core/data_adapters/BaseAdapter': BaseAdapterExports,
+    // `adapterCache` is module-level state, so a plugin that bundles its own copy
+    // of this file gets a second cache in the RPC worker — and
+    // `freeAdapterResources`, which CoreFreeResources calls on the host's copy
+    // when the last track using an adapter config closes, never sees it. The
+    // cache is the only strong reference to an adapter, so those adapters and
+    // everything they hold live as long as the worker. Serving the module is what
+    // makes an external RPC method share the host's cache.
+    '@jbrowse/core/data_adapters/dataAdapterCache': dataAdapterCache,
+};

package/esm/ReExports/uiStub.d.ts

@@ -0,0 +1,2 @@
+export declare const uiStub: unknown;
+export declare function uiNamespace(names: readonly string[]): Record<string, unknown>;

package/esm/ReExports/uiStub.js

@@ -0,0 +1,11 @@
+// The RPC worker's stand-in for a UI entry of the plugin ABI; why, and why a
+// namespace gets real own keys: agent-docs/reference/EAGER_BUNDLE.md.
+export const uiStub = new Proxy(function stubTarget() { }, {
+    get: (_, key) => key === 'then' ? undefined : key === Symbol.toPrimitive ? () => '' : uiStub,
+    has: () => true,
+    apply: () => uiStub,
+    construct: () => uiStub,
+});
+export function uiNamespace(names) {
+    return Object.fromEntries(names.map(name => [name, uiStub]));
+}

package/esm/ReExports/workerModules.d.ts

@@ -0,0 +1,2 @@
+declare const libs: Record<string, unknown>;
+export default libs;

package/esm/ReExports/workerModules.js

@@ -0,0 +1,15 @@
+import reExportsList from './list.js';
+import { sharedModules } from './sharedModules.js';
+import { uiNamespace, uiStub } from './uiStub.js';
+import { WORKER_NAMESPACE_NAMES } from './workerNamespaceNames.js';
+// Same keys as modules.ts; UI entries stubbed. agent-docs/reference/EAGER_BUNDLE.md
+const libs = {
+    ...Object.fromEntries(reExportsList.map(name => [
+        name,
+        name in WORKER_NAMESPACE_NAMES
+            ? uiNamespace(WORKER_NAMESPACE_NAMES[name])
+            : uiStub,
+    ])),
+    ...sharedModules,
+};
+export default libs;

package/esm/ReExports/workerNamespaceNames.d.ts

@@ -0,0 +1,11 @@
+export declare const REACT_DOM_NAMES: string[];
+export declare const REACT_DOM_CLIENT_NAMES: string[];
+export declare const MOBX_REACT_NAMES: string[];
+export declare const MUI_UTILS_NAMES: string[];
+export declare const MUI_STYLES_NAMES: string[];
+export declare const TSS_REACT_NAMES: string[];
+export declare const MATERIAL_UI_LAB_NAMES: string[];
+export declare const MUI_MATERIAL_NAMES: string[];
+export declare const MATERIAL_UI_CORE_NAMES: string[];
+export declare const CORE_UI_NAMES: string[];
+export declare const WORKER_NAMESPACE_NAMES: Record<string, readonly string[]>;