@jbrowse/core 5.0.0-beta.1 → 5.0.0-beta.11

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (637) hide show
  1. package/README.md +1709 -390
  2. package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.d.ts +3 -2
  3. package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +5 -5
  4. package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts +3 -5
  5. package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +34 -29
  6. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.js +1 -4
  7. package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.d.ts +11 -0
  8. package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.js +37 -14
  9. package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.d.ts +1 -1
  10. package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.js +15 -31
  11. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.d.ts +4 -3
  12. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js +12 -25
  13. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetailsFrame.d.ts +11 -0
  14. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetailsFrame.js +11 -0
  15. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldActionsButton.d.ts +8 -0
  16. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldActionsButton.js +24 -0
  17. package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.js +6 -4
  18. package/esm/BaseFeatureWidget/BaseFeatureDetail/ParentFeatureLine.d.ts +4 -0
  19. package/esm/BaseFeatureWidget/BaseFeatureDetail/ParentFeatureLine.js +17 -0
  20. package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.d.ts +3 -2
  21. package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +5 -3
  22. package/esm/BaseFeatureWidget/BaseFeatureDetail/index.d.ts +6 -2
  23. package/esm/BaseFeatureWidget/BaseFeatureDetail/index.js +7 -18
  24. package/esm/BaseFeatureWidget/BaseFeatureDetail/jexlFilterActions.d.ts +16 -0
  25. package/esm/BaseFeatureWidget/BaseFeatureDetail/jexlFilterActions.js +49 -0
  26. package/esm/BaseFeatureWidget/BaseFeatureDetail/util.d.ts +0 -8
  27. package/esm/BaseFeatureWidget/BaseFeatureDetail/util.js +6 -29
  28. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.js +7 -34
  29. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.d.ts +2 -2
  30. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.js +2 -2
  31. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.js +3 -1
  32. package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.d.ts +12 -0
  33. package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.js +12 -5
  34. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.js +8 -5
  35. package/esm/BaseFeatureWidget/configSchema.d.ts +1 -1
  36. package/esm/BaseFeatureWidget/formatDetails.d.ts +13 -29
  37. package/esm/BaseFeatureWidget/formatDetails.js +62 -83
  38. package/esm/BaseFeatureWidget/index.d.ts +2 -1
  39. package/esm/BaseFeatureWidget/stateModelFactory.d.ts +42 -29
  40. package/esm/BaseFeatureWidget/stateModelFactory.js +98 -98
  41. package/esm/BaseFeatureWidget/types.d.ts +12 -6
  42. package/esm/BaseFeatureWidget/util.d.ts +0 -10
  43. package/esm/BaseFeatureWidget/util.js +0 -17
  44. package/esm/CorePlugin.js +34 -3
  45. package/esm/PluginLoader.d.ts +24 -13
  46. package/esm/PluginLoader.js +167 -51
  47. package/esm/PluginManager.d.ts +130 -24
  48. package/esm/PluginManager.js +180 -32
  49. package/esm/ReExports/MuiDataGridReExports.d.ts +1 -0
  50. package/esm/ReExports/MuiDataGridReExports.js +2 -2
  51. package/esm/ReExports/coreModules.generated.d.ts +2 -0
  52. package/esm/ReExports/coreModules.generated.js +530 -0
  53. package/esm/ReExports/coreWorkerModules.generated.d.ts +2 -0
  54. package/esm/ReExports/coreWorkerModules.generated.js +490 -0
  55. package/esm/ReExports/frameworkModules.d.ts +2 -0
  56. package/esm/ReExports/frameworkModules.js +68 -0
  57. package/esm/ReExports/frameworkShared.d.ts +12 -0
  58. package/esm/ReExports/frameworkShared.js +16 -0
  59. package/esm/ReExports/frameworkWorkerModules.generated.d.ts +2 -0
  60. package/esm/ReExports/frameworkWorkerModules.generated.js +130 -0
  61. package/esm/ReExports/list.js +528 -79
  62. package/esm/ReExports/modules.d.ts +1 -1
  63. package/esm/ReExports/modules.js +10 -165
  64. package/esm/ReExports/registry.d.ts +1 -0
  65. package/esm/ReExports/registry.js +23 -5
  66. package/esm/ReExports/uiStub.d.ts +3 -0
  67. package/esm/ReExports/uiStub.js +33 -0
  68. package/esm/ReExports/workerModules.d.ts +2 -0
  69. package/esm/ReExports/workerModules.js +11 -0
  70. package/esm/TextSearch/TextSearchManager.d.ts +27 -13
  71. package/esm/TextSearch/TextSearchManager.js +77 -36
  72. package/esm/TextSearch/places.d.ts +12 -0
  73. package/esm/TextSearch/places.js +94 -0
  74. package/esm/assemblyManager/assembly.d.ts +21 -19
  75. package/esm/assemblyManager/assembly.js +28 -26
  76. package/esm/assemblyManager/assemblyAdapters.d.ts +1 -1
  77. package/esm/assemblyManager/assemblyAdapters.js +8 -2
  78. package/esm/assemblyManager/assemblyConfigSchema.d.ts +31 -90
  79. package/esm/assemblyManager/assemblyConfigSchema.js +35 -47
  80. package/esm/assemblyManager/assemblyManager.d.ts +35 -180
  81. package/esm/assemblyManager/assemblyManager.js +47 -51
  82. package/esm/assemblyManager/expandAssemblyConfigShorthand.d.ts +25 -18
  83. package/esm/assemblyManager/expandAssemblyConfigShorthand.js +78 -49
  84. package/esm/assemblyManager/geneticCodes.js +2 -5
  85. package/esm/assemblyManager/getSequenceAdapterConfig.d.ts +10 -0
  86. package/esm/assemblyManager/getSequenceAdapterConfig.js +10 -0
  87. package/esm/assemblyManager/indexAssemblyNames.d.ts +9 -0
  88. package/esm/assemblyManager/indexAssemblyNames.js +22 -0
  89. package/esm/assemblyManager/loadRefNameMap.d.ts +1 -1
  90. package/esm/assemblyManager/loadRefNameMap.js +4 -9
  91. package/esm/assemblyManager/refNameMapKey.d.ts +7 -0
  92. package/esm/assemblyManager/refNameMapKey.js +12 -0
  93. package/esm/checkPlugins.d.ts +2 -0
  94. package/esm/checkPlugins.js +38 -17
  95. package/esm/configuration/bamIndexFields.d.ts +49 -0
  96. package/esm/configuration/bamIndexFields.js +41 -0
  97. package/esm/configuration/configurationSchema.d.ts +101 -71
  98. package/esm/configuration/configurationSchema.js +207 -134
  99. package/esm/configuration/configurationSchemaUnion.d.ts +39 -0
  100. package/esm/configuration/configurationSchemaUnion.js +56 -0
  101. package/esm/configuration/configurationSlot.d.ts +150 -60
  102. package/esm/configuration/configurationSlot.js +103 -75
  103. package/esm/configuration/fillLocations.d.ts +14 -0
  104. package/esm/configuration/fillLocations.js +14 -0
  105. package/esm/configuration/formatAboutConfigSchema.d.ts +7 -21
  106. package/esm/configuration/formatDetailsConfigSchema.d.ts +11 -37
  107. package/esm/configuration/formatDetailsConfigSchema.js +10 -13
  108. package/esm/configuration/fullConfSnapshot.d.ts +4 -19
  109. package/esm/configuration/fullConfSnapshot.js +30 -52
  110. package/esm/configuration/getConf.d.ts +45 -41
  111. package/esm/configuration/getConf.js +111 -44
  112. package/esm/configuration/index.d.ts +26 -11
  113. package/esm/configuration/index.js +16 -7
  114. package/esm/configuration/indexType.d.ts +26 -0
  115. package/esm/configuration/indexType.js +38 -0
  116. package/esm/configuration/mergeFormatCallbacks.d.ts +6 -7
  117. package/esm/configuration/mergeFormatCallbacks.js +13 -10
  118. package/esm/configuration/plot.d.ts +61 -0
  119. package/esm/configuration/plot.js +142 -0
  120. package/esm/configuration/readConfObject.d.ts +2 -24
  121. package/esm/configuration/readConfObject.js +20 -63
  122. package/esm/configuration/requirements.d.ts +37 -0
  123. package/esm/configuration/requirements.js +88 -0
  124. package/esm/configuration/schemaRegistry.d.ts +32 -15
  125. package/esm/configuration/schemaRegistry.js +33 -35
  126. package/esm/configuration/schemaTypes.d.ts +21 -5
  127. package/esm/configuration/schemaTypes.js +66 -55
  128. package/esm/configuration/slotFacade.d.ts +12 -29
  129. package/esm/configuration/slotFacade.js +44 -23
  130. package/esm/configuration/snapshotPreprocess.d.ts +43 -0
  131. package/esm/configuration/snapshotPreprocess.js +161 -0
  132. package/esm/configuration/tabixIndexFields.d.ts +30 -4
  133. package/esm/configuration/tabixIndexFields.js +21 -4
  134. package/esm/configuration/tabixShorthand.d.ts +34 -17
  135. package/esm/configuration/tabixShorthand.js +49 -22
  136. package/esm/configuration/types.d.ts +182 -43
  137. package/esm/configuration/uriShorthand.d.ts +9 -0
  138. package/esm/configuration/uriShorthand.js +16 -0
  139. package/esm/data_adapters/BaseAdapter/BaseAdapter.d.ts +13 -19
  140. package/esm/data_adapters/BaseAdapter/BaseAdapter.js +12 -19
  141. package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.d.ts +40 -2
  142. package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.js +68 -5
  143. package/esm/data_adapters/BaseAdapter/featureDensity.d.ts +40 -0
  144. package/esm/data_adapters/BaseAdapter/featureDensity.js +31 -0
  145. package/esm/data_adapters/BaseAdapter/index.d.ts +23 -3
  146. package/esm/data_adapters/BaseAdapter/index.js +1 -0
  147. package/esm/data_adapters/BaseAdapter/rowSources.d.ts +37 -0
  148. package/esm/data_adapters/BaseAdapter/rowSources.js +7 -0
  149. package/esm/data_adapters/BaseAdapter/stats.d.ts +33 -1
  150. package/esm/data_adapters/BaseAdapter/stats.js +52 -13
  151. package/esm/data_adapters/BaseAdapter/types.d.ts +8 -12
  152. package/esm/data_adapters/BaseAdapter/zoomRange.d.ts +10 -0
  153. package/esm/data_adapters/CytobandAdapter/CytobandAdapter.js +1 -1
  154. package/esm/data_adapters/CytobandAdapter/configSchema.d.ts +7 -11
  155. package/esm/data_adapters/CytobandAdapter/configSchema.js +3 -17
  156. package/esm/data_adapters/dataAdapterCache.d.ts +19 -2
  157. package/esm/data_adapters/dataAdapterCache.js +44 -10
  158. package/esm/data_adapters/getFeatureAdapter.d.ts +6 -4
  159. package/esm/data_adapters/getFeatureAdapter.js +8 -8
  160. package/esm/data_adapters/getSequenceSubAdapter.d.ts +7 -9
  161. package/esm/data_adapters/getSequenceSubAdapter.js +8 -10
  162. package/esm/pluggableElementTypes/AdapterType.d.ts +8 -8
  163. package/esm/pluggableElementTypes/AdapterType.js +1 -1
  164. package/esm/pluggableElementTypes/DisplayType.d.ts +53 -16
  165. package/esm/pluggableElementTypes/DisplayType.js +28 -12
  166. package/esm/pluggableElementTypes/LazyStateModelElement.d.ts +32 -0
  167. package/esm/pluggableElementTypes/LazyStateModelElement.js +77 -0
  168. package/esm/pluggableElementTypes/PluggableElementBase.d.ts +3 -5
  169. package/esm/pluggableElementTypes/PluggableElementBase.js +3 -5
  170. package/esm/pluggableElementTypes/RpcMethodType.d.ts +11 -1
  171. package/esm/pluggableElementTypes/RpcMethodType.js +25 -9
  172. package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.d.ts +1 -2
  173. package/esm/pluggableElementTypes/TextSearchAdapterType.d.ts +7 -7
  174. package/esm/pluggableElementTypes/ViewType.d.ts +20 -4
  175. package/esm/pluggableElementTypes/ViewType.js +32 -4
  176. package/esm/pluggableElementTypes/WidgetType.d.ts +6 -0
  177. package/esm/pluggableElementTypes/WidgetType.js +6 -0
  178. package/esm/pluggableElementTypes/addMenuItems.d.ts +3 -2
  179. package/esm/pluggableElementTypes/extendElementType.d.ts +1 -2
  180. package/esm/pluggableElementTypes/extendElementType.js +9 -5
  181. package/esm/pluggableElementTypes/index.d.ts +2 -1
  182. package/esm/pluggableElementTypes/index.js +2 -9
  183. package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts +19 -9
  184. package/esm/pluggableElementTypes/models/BaseDisplayModel.d.ts +122 -28
  185. package/esm/pluggableElementTypes/models/BaseDisplayModel.js +155 -11
  186. package/esm/pluggableElementTypes/models/BaseTrackModel.d.ts +65 -16
  187. package/esm/pluggableElementTypes/models/BaseTrackModel.js +179 -117
  188. package/esm/pluggableElementTypes/models/BaseViewModel.d.ts +87 -18
  189. package/esm/pluggableElementTypes/models/BaseViewModel.js +54 -11
  190. package/esm/pluggableElementTypes/models/InternetAccountModel.d.ts +26 -16
  191. package/esm/pluggableElementTypes/models/assertDisplayContract.d.ts +15 -11
  192. package/esm/pluggableElementTypes/models/assertDisplayContract.js +25 -32
  193. package/esm/pluggableElementTypes/models/baseConnectionConfig.d.ts +22 -18
  194. package/esm/pluggableElementTypes/models/baseConnectionConfig.js +5 -5
  195. package/esm/pluggableElementTypes/models/baseInternetAccountConfig.d.ts +26 -31
  196. package/esm/pluggableElementTypes/models/baseTrackConfig.d.ts +108 -147
  197. package/esm/pluggableElementTypes/models/baseTrackConfig.js +96 -73
  198. package/esm/pluggableElementTypes/models/components/SaveTrackData.js +4 -6
  199. package/esm/pluggableElementTypes/models/components/fetchTrackData.d.ts +3 -4
  200. package/esm/pluggableElementTypes/models/components/fetchTrackData.js +3 -3
  201. package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.d.ts +23 -13
  202. package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.js +80 -48
  203. package/esm/pluggableElementTypes/models/index.d.ts +2 -3
  204. package/esm/pluggableElementTypes/models/index.js +2 -3
  205. package/esm/pluggableElementTypes/models/migrateTrackConfig.d.ts +15 -1
  206. package/esm/pluggableElementTypes/models/migrateTrackConfig.js +85 -25
  207. package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.d.ts +4 -3
  208. package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.js +141 -19
  209. package/esm/pluggableElementTypes/models/saveTrackFileTypes/types.d.ts +3 -3
  210. package/esm/pluginDefinitions.d.ts +34 -7
  211. package/esm/pluginDefinitions.js +54 -20
  212. package/esm/rpc/BaseRpcDriver.d.ts +2 -2
  213. package/esm/rpc/BaseRpcDriver.js +25 -30
  214. package/esm/rpc/MainThreadRpcDriver.d.ts +2 -2
  215. package/esm/rpc/MainThreadRpcDriver.js +13 -8
  216. package/esm/rpc/RpcClient.d.ts +18 -6
  217. package/esm/rpc/RpcClient.js +51 -16
  218. package/esm/rpc/RpcManager.d.ts +14 -10
  219. package/esm/rpc/RpcManager.js +11 -1
  220. package/esm/rpc/RpcRegistry.d.ts +40 -7
  221. package/esm/rpc/RpcServer.d.ts +3 -1
  222. package/esm/rpc/RpcServer.js +19 -12
  223. package/esm/rpc/WebWorkerRpcDriver.d.ts +11 -4
  224. package/esm/rpc/WebWorkerRpcDriver.js +64 -68
  225. package/esm/rpc/byteBudget.d.ts +20 -5
  226. package/esm/rpc/byteBudget.js +16 -5
  227. package/esm/rpc/configSchema.d.ts +7 -21
  228. package/esm/rpc/coreRpcMethods.d.ts +4 -0
  229. package/esm/rpc/coreRpcMethods.js +4 -0
  230. package/esm/rpc/methods/CoreGetEncodedFeature.d.ts +13 -0
  231. package/esm/rpc/methods/CoreGetEncodedFeature.js +32 -0
  232. package/esm/rpc/methods/CoreGetEncodedLayers.d.ts +16 -0
  233. package/esm/rpc/methods/CoreGetEncodedLayers.js +59 -0
  234. package/esm/rpc/methods/CoreGetExportData.js +3 -4
  235. package/esm/rpc/methods/CoreGetFeatureDensity.d.ts +11 -0
  236. package/esm/rpc/methods/CoreGetFeatureDensity.js +22 -0
  237. package/esm/rpc/methods/CoreGetFeatures.js +3 -5
  238. package/esm/rpc/methods/CoreGetRefNames.js +2 -12
  239. package/esm/rpc/methods/CoreGetRegionByteEstimate.js +1 -1
  240. package/esm/rpc/methods/CoreGetSequence.js +2 -2
  241. package/esm/rpc/methods/CoreLoadAdapterCode.d.ts +13 -0
  242. package/esm/rpc/methods/CoreLoadAdapterCode.js +16 -0
  243. package/esm/rpc/methods/layerFeatures.d.ts +33 -0
  244. package/esm/rpc/methods/layerFeatures.js +29 -0
  245. package/esm/svg/SvgExport.js +6 -7
  246. package/esm/svg/SvgThemeProviders.d.ts +12 -0
  247. package/esm/svg/SvgThemeProviders.js +15 -0
  248. package/esm/svg/exportViewSvg.d.ts +28 -0
  249. package/esm/svg/exportViewSvg.js +13 -0
  250. package/esm/svg/normalizeSvgMarkup.d.ts +7 -0
  251. package/esm/svg/normalizeSvgMarkup.js +99 -0
  252. package/esm/svg/serializeSvg.d.ts +7 -0
  253. package/esm/svg/serializeSvg.js +11 -0
  254. package/esm/svg/svgId.d.ts +1 -1
  255. package/esm/svg/svgId.js +1 -1
  256. package/esm/svg/svgReady.d.ts +9 -7
  257. package/esm/svg/svgReady.js +8 -7
  258. package/esm/svg/trackNames.d.ts +7 -5
  259. package/esm/svg/trackNames.js +12 -9
  260. package/esm/svg/wrapSvgExport.js +6 -74
  261. package/esm/ui/AddCustomPluginDialog.js +3 -8
  262. package/esm/ui/AppReadyMarker.d.ts +45 -0
  263. package/esm/ui/AppReadyMarker.js +89 -0
  264. package/esm/ui/BaseExportSvgDialog.d.ts +1 -1
  265. package/esm/ui/CascadingMenu.js +181 -104
  266. package/esm/ui/DropDownMenu.js +2 -1
  267. package/esm/ui/ErrorBanner.js +1 -1
  268. package/esm/ui/ErrorBoundary.d.ts +2 -2
  269. package/esm/ui/ErrorMessageStackTraceContents.js +2 -1
  270. package/esm/ui/ErrorMessageStackTraceDialog.js +5 -11
  271. package/esm/ui/ExportSvgDialog.d.ts +1 -1
  272. package/esm/ui/FileDropZone.js +2 -1
  273. package/esm/ui/FileSelector/useInternetAccounts.d.ts +156 -96
  274. package/esm/ui/HoverMenu.d.ts +1 -2
  275. package/esm/ui/HoverMenu.js +6 -3
  276. package/esm/ui/JexlFilterDialog.d.ts +13 -10
  277. package/esm/ui/JexlFilterDialog.js +122 -50
  278. package/esm/ui/JexlFilterRowEditors.d.ts +15 -0
  279. package/esm/ui/JexlFilterRowEditors.js +90 -0
  280. package/esm/ui/LazyBaseTooltip.d.ts +4 -0
  281. package/esm/ui/LazyBaseTooltip.js +9 -0
  282. package/esm/ui/LegendSwatchGlyph.js +26 -21
  283. package/esm/ui/LoadingOverlay.d.ts +14 -0
  284. package/esm/ui/LoadingOverlay.js +4 -2
  285. package/esm/ui/MenuTypes.d.ts +23 -53
  286. package/esm/ui/MenuTypes.js +3 -0
  287. package/esm/ui/MonospaceTextField.d.ts +2 -1
  288. package/esm/ui/MonospaceTextField.js +23 -20
  289. package/esm/ui/PaletteContext.d.ts +10 -5
  290. package/esm/ui/PaletteContext.js +44 -6
  291. package/esm/ui/RefNameAutocomplete/SearchOption.d.ts +13 -0
  292. package/esm/ui/RefNameAutocomplete/SearchOption.js +45 -0
  293. package/esm/ui/RefNameAutocomplete/index.d.ts +1 -2
  294. package/esm/ui/RefNameAutocomplete/index.js +8 -2
  295. package/esm/ui/RefNameAutocomplete/util.d.ts +13 -0
  296. package/esm/ui/RefNameAutocomplete/util.js +42 -1
  297. package/esm/ui/ResizeHandle.d.ts +3 -1
  298. package/esm/ui/ResizeHandle.js +44 -11
  299. package/esm/ui/ScrollChrome.d.ts +13 -0
  300. package/esm/ui/ScrollChrome.js +11 -0
  301. package/esm/ui/ScrollEdgeShadow.d.ts +6 -9
  302. package/esm/ui/ScrollEdgeShadow.js +14 -35
  303. package/esm/ui/ScrollZoomToggle.d.ts +4 -27
  304. package/esm/ui/ScrollZoomToggle.js +34 -51
  305. package/esm/ui/SessionJsonPanel.d.ts +3 -0
  306. package/esm/ui/SessionJsonPanel.js +14 -0
  307. package/esm/ui/SettingsChangesTable.d.ts +1 -0
  308. package/esm/ui/SettingsChangesTable.js +49 -11
  309. package/esm/ui/ShareLinkField.d.ts +1 -3
  310. package/esm/ui/ShareLinkField.js +13 -40
  311. package/esm/ui/SizeSliderRow.d.ts +1 -3
  312. package/esm/ui/SizeSliderRow.js +4 -6
  313. package/esm/ui/SnackbarModel.js +79 -67
  314. package/esm/ui/StatusProgressBar.js +2 -2
  315. package/esm/ui/SvgColorLegend.d.ts +9 -4
  316. package/esm/ui/SvgColorLegend.js +82 -41
  317. package/esm/ui/VerticalScrollbar.d.ts +13 -34
  318. package/esm/ui/VerticalScrollbar.js +29 -83
  319. package/esm/ui/ViewLoadingScreen.d.ts +5 -4
  320. package/esm/ui/ViewLoadingScreen.js +8 -32
  321. package/esm/ui/colorScale.d.ts +92 -0
  322. package/esm/ui/colorScale.js +72 -0
  323. package/esm/ui/colors.d.ts +64 -0
  324. package/esm/ui/colors.js +230 -1
  325. package/esm/ui/hoverBoxStyle.d.ts +14 -2
  326. package/esm/ui/hoverBoxStyle.js +17 -2
  327. package/esm/ui/index.d.ts +12 -12
  328. package/esm/ui/index.js +14 -22
  329. package/esm/ui/launchViewMenu.js +15 -5
  330. package/esm/ui/legendMenuItem.d.ts +10 -32
  331. package/esm/ui/legendMenuItem.js +9 -36
  332. package/esm/ui/legendSpec.d.ts +15 -8
  333. package/esm/ui/legendSpec.js +14 -23
  334. package/esm/ui/makeSizeMenu.d.ts +0 -6
  335. package/esm/ui/makeSizeMenu.js +6 -30
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package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.js DELETED
@@ -1,1116 +0,0 @@
1
- export default {
2
- source: 'BestRefSeq',
3
- type: 'gene',
4
- start: 36023399,
5
- end: 36032380,
6
- strand: 1,
7
- phase: 0,
8
- refName: 'NC_000001.10',
9
- id: 'gene634',
10
- dbxref: ['GeneID:23154', 'HGNC:HGNC:17597', 'MIM:608458'],
11
- name: 'NCDN',
12
- description: 'neurochondrin',
13
- gbkey: 'Gene',
14
- gene: 'NCDN',
15
- gene_biotype: 'protein_coding',
16
- subfeatures: [
17
- {
18
- source: 'BestRefSeq',
19
- type: 'mRNA',
20
- start: 36023399,
21
- end: 36032380,
22
- strand: 1,
23
- phase: 0,
24
- refName: 'NC_000001.10',
25
- id: 'mRNA1331',
26
- parent: 'gene634',
27
- dbxref: [
28
- 'GeneID:23154',
29
- 'Genbank:NM_014284.3',
30
- 'HGNC:HGNC:17597',
31
- 'MIM:608458',
32
- ],
33
- name: 'NM_014284.3',
34
- gbkey: 'mRNA',
35
- gene: 'NCDN',
36
- product: 'neurochondrin, transcript variant 3',
37
- tag: 'RefSeq Select',
38
- transcript_id: 'NM_014284.3',
39
- subfeatures: [
40
- {
41
- source: 'BestRefSeq',
42
- type: 'exon',
43
- start: 36023399,
44
- end: 36023824,
45
- strand: 1,
46
- phase: 0,
47
- refName: 'NC_000001.10',
48
- parent: 'mRNA1331',
49
- dbxref: [
50
- 'GeneID:23154',
51
- 'Genbank:NM_014284.3',
52
- 'HGNC:HGNC:17597',
53
- 'MIM:608458',
54
- ],
55
- gbkey: 'mRNA',
56
- gene: 'NCDN',
57
- product: 'neurochondrin, transcript variant 3',
58
- tag: 'RefSeq Select',
59
- transcript_id: 'NM_014284.3',
60
- uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-0-0',
61
- parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-0',
62
- },
63
- {
64
- source: 'BestRefSeq',
65
- type: 'CDS',
66
- start: 36023791,
67
- end: 36023824,
68
- strand: 1,
69
- phase: 0,
70
- refName: 'NC_000001.10',
71
- id: 'CDS1286',
72
- parent: 'mRNA1331',
73
- dbxref: [
74
- 'CCDS:CCDS392.1',
75
- 'GeneID:23154',
76
- 'Genbank:NP_055099.1',
77
- 'HGNC:HGNC:17597',
78
- 'MIM:608458',
79
- ],
80
- name: 'NP_055099.1',
81
- note: 'isoform 1 is encoded by transcript variant 3',
82
- gbkey: 'CDS',
83
- gene: 'NCDN',
84
- product: 'neurochondrin isoform 1',
85
- protein_id: 'NP_055099.1',
86
- tag: 'RefSeq Select',
87
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1021
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1022
- {
1023
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1024
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1025
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1026
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1027
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1028
- phase: 0,
1029
- refName: 'NC_000001.10',
1030
- parent: 'mRNA1332',
1031
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1032
- 'GeneID:23154',
1033
- 'Genbank:NM_001014839.2',
1034
- 'HGNC:HGNC:17597',
1035
- 'MIM:608458',
1036
- ],
1037
- gbkey: 'mRNA',
1038
- gene: 'NCDN',
1039
- product: 'neurochondrin, transcript variant 1',
1040
- transcript_id: 'NM_001014839.2',
1041
- uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-2-11',
1042
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1043
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1044
- {
1045
- source: 'BestRefSeq',
1046
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1047
- start: 36028802,
1048
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1049
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1050
- phase: 0,
1051
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1052
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1053
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1054
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1055
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1056
- 'HGNC:HGNC:17597',
1057
- 'MIM:608458',
1058
- ],
1059
- gbkey: 'mRNA',
1060
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1061
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1062
- transcript_id: 'NM_001014839.2',
1063
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1064
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1065
- },
1066
- {
1067
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1068
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1069
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1070
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1071
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1072
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1073
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1074
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1075
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1076
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1077
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1078
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1079
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1080
- ],
1081
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1082
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1083
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1084
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1085
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1086
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1087
- },
1088
- {
1089
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1090
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1091
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1092
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1093
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1094
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1095
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1096
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1097
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1098
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1099
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1100
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1101
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1102
- ],
1103
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1104
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1105
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1106
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1107
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1108
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1109
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1110
- ],
1111
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1112
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1113
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1114
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1115
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1116
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