@jbrowse/core 4.3.0 → 5.0.0-beta.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +783 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.d.ts +13 -3
- package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +33 -22
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts +8 -3
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +117 -19
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.d.ts +2 -8
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.js +4 -4
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.js +2 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.js +4 -4
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.js +12 -5
- package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.js +28 -17
- package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.js +19 -40
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.d.ts +6 -4
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js +46 -30
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.d.ts +20 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.js +66 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.js +2 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.d.ts +3 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.js +17 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.d.ts +1 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.js +3 -9
- package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.d.ts +3 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +3 -3
- package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.d.ts +3 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.js +7 -14
- package/esm/BaseFeatureWidget/BaseFeatureDetail/index.d.ts +2 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/index.js +19 -13
- package/esm/BaseFeatureWidget/BaseFeatureDetail/types.d.ts +5 -4
- package/esm/BaseFeatureWidget/BaseFeatureDetail/util.d.ts +8 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/util.js +32 -10
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.d.ts +18 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.js +10 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.d.ts +7 -4
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.js +62 -24
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.d.ts +10 -5
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.js +64 -41
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.js +17 -8
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.d.ts +6 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.js +19 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.d.ts +5 -4
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.js +15 -18
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.js +33 -17
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.d.ts +3 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.js +7 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.d.ts +11 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.js +29 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.js +4 -6
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.d.ts +18 -6
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.js +11 -29
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.d.ts +9 -2
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.js +63 -58
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.d.ts +7 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.js +38 -51
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.js +19 -27
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.d.ts +6 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.js +18 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.d.ts +12 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.js +97 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/index.js +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.d.ts +50 -63
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.js +62 -59
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/panelAssemblyName.d.ts +21 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/panelAssemblyName.js +24 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.d.ts +5 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.js +93 -75
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.js +4 -11
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.d.ts +5 -2
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.js +21 -48
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/PlainSequence.d.ts +8 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/PlainSequence.js +20 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.d.ts +6 -3
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.js +33 -13
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.d.ts +7 -4
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.js +67 -11
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/renderSequenceSegments.d.ts +14 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/renderSequenceSegments.js +42 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.d.ts +7 -7
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/types.d.ts +8 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.d.ts +9 -9
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.js +28 -44
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceFetch.d.ts +23 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceFetch.js +31 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.d.ts +90 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.js +145 -23
- package/esm/BaseFeatureWidget/configSchema.js +1 -1
- package/esm/BaseFeatureWidget/formatDetails.d.ts +38 -0
- package/esm/BaseFeatureWidget/formatDetails.js +103 -0
- package/esm/BaseFeatureWidget/index.d.ts +3 -1
- package/esm/BaseFeatureWidget/index.js +2 -2
- package/esm/BaseFeatureWidget/stateModelFactory.d.ts +80 -62
- package/esm/BaseFeatureWidget/stateModelFactory.js +128 -29
- package/esm/BaseFeatureWidget/types.d.ts +4 -3
- package/esm/BaseFeatureWidget/util.d.ts +4 -29
- package/esm/BaseFeatureWidget/util.js +20 -84
- package/esm/CorePlugin.js +11 -6
- package/esm/PhasedScheduler.d.ts +4 -2
- package/esm/PhasedScheduler.js +18 -2
- package/esm/Plugin.d.ts +6 -1
- package/esm/Plugin.js +7 -0
- package/esm/PluginLoader.d.ts +40 -40
- package/esm/PluginLoader.js +166 -82
- package/esm/PluginManager.d.ts +368 -55
- package/esm/PluginManager.js +326 -85
- package/esm/ReExports/BaseFeatureDetails.js +7 -6
- package/esm/ReExports/MuiDataGridReExports.d.ts +2 -2
- package/esm/ReExports/MuiDataGridReExports.js +58 -130
- package/esm/ReExports/MuiReExports.d.ts +3 -134
- package/esm/ReExports/MuiReExports.js +43 -16
- package/esm/ReExports/MuiStylesReExports.d.ts +66 -0
- package/esm/ReExports/MuiStylesReExports.js +55 -0
- package/esm/ReExports/index.js +1 -1
- package/esm/ReExports/lazify.d.ts +2 -2
- package/esm/ReExports/lazify.js +16 -3
- package/esm/ReExports/list.js +54 -229
- package/esm/ReExports/modules.js +84 -65
- package/esm/ReExports/muiComponentNames.d.ts +18 -0
- package/esm/ReExports/muiComponentNames.js +130 -0
- package/esm/ReExports/publicUtil.d.ts +1 -0
- package/esm/ReExports/publicUtil.js +28 -0
- package/esm/ReExports/registry.d.ts +2 -0
- package/esm/ReExports/registry.js +28 -0
- package/esm/TextSearch/BaseResults.d.ts +20 -21
- package/esm/TextSearch/BaseResults.js +8 -33
- package/esm/TextSearch/TextSearchManager.d.ts +14 -34
- package/esm/TextSearch/TextSearchManager.js +87 -34
- package/esm/assemblyManager/assembly.d.ts +307 -34
- package/esm/assemblyManager/assembly.js +551 -262
- package/esm/assemblyManager/assemblyAdapters.d.ts +12 -0
- package/esm/assemblyManager/assemblyAdapters.js +18 -0
- package/esm/assemblyManager/assemblyConfigSchema.d.ts +192 -17
- package/esm/assemblyManager/assemblyConfigSchema.js +213 -19
- package/esm/assemblyManager/assemblyManager.d.ts +711 -303
- package/esm/assemblyManager/assemblyManager.js +351 -46
- package/esm/assemblyManager/expandAssemblyConfigShorthand.d.ts +32 -0
- package/esm/assemblyManager/expandAssemblyConfigShorthand.js +85 -0
- package/esm/assemblyManager/geneticCodes.d.ts +21 -0
- package/esm/assemblyManager/geneticCodes.js +47 -0
- package/esm/assemblyManager/getSequenceAdapterConfig.d.ts +9 -0
- package/esm/assemblyManager/getSequenceAdapterConfig.js +12 -0
- package/esm/assemblyManager/index.d.ts +1 -1
- package/esm/assemblyManager/index.js +2 -2
- package/esm/assemblyManager/loadRefNameMap.d.ts +5 -0
- package/esm/assemblyManager/loadRefNameMap.js +80 -0
- package/esm/assemblyManager/refNameColors.d.ts +1 -0
- package/esm/assemblyManager/refNameColors.js +32 -0
- package/esm/assemblyManager/refNameMaps.d.ts +26 -0
- package/esm/assemblyManager/refNameMaps.js +87 -0
- package/esm/assemblyManager/refNameMismatch.d.ts +54 -0
- package/esm/assemblyManager/refNameMismatch.js +66 -0
- package/esm/checkPlugins.d.ts +11 -0
- package/esm/checkPlugins.js +77 -0
- package/esm/configuration/configurationSchema.d.ts +154 -19
- package/esm/configuration/configurationSchema.js +359 -138
- package/esm/configuration/configurationSlot.d.ts +283 -30
- package/esm/configuration/configurationSlot.js +205 -226
- package/esm/configuration/formatAboutConfigSchema.d.ts +55 -0
- package/esm/configuration/formatAboutConfigSchema.js +58 -0
- package/esm/configuration/formatDetailsConfigSchema.d.ts +80 -0
- package/esm/configuration/formatDetailsConfigSchema.js +90 -0
- package/esm/configuration/fullConfSnapshot.d.ts +28 -0
- package/esm/configuration/fullConfSnapshot.js +66 -0
- package/esm/configuration/getConf.d.ts +88 -0
- package/esm/configuration/getConf.js +74 -0
- package/esm/configuration/index.d.ts +19 -3
- package/esm/configuration/index.js +19 -2
- package/esm/configuration/mergeFormatCallbacks.d.ts +15 -0
- package/esm/configuration/mergeFormatCallbacks.js +24 -0
- package/esm/configuration/promotableDefaults.d.ts +199 -0
- package/esm/configuration/promotableDefaults.js +326 -0
- package/esm/configuration/promotablePin.d.ts +55 -0
- package/esm/configuration/promotableResolve.d.ts +108 -0
- package/esm/configuration/promotableResolve.js +117 -0
- package/esm/configuration/promotableSlots.d.ts +12 -0
- package/esm/configuration/promotableSlots.js +45 -0
- package/esm/configuration/readConfObject.d.ts +56 -0
- package/esm/configuration/readConfObject.js +161 -0
- package/esm/configuration/schemaRegistry.d.ts +35 -0
- package/esm/configuration/schemaRegistry.js +50 -0
- package/esm/configuration/schemaTypes.d.ts +23 -0
- package/esm/configuration/schemaTypes.js +94 -0
- package/esm/configuration/slotFacade.d.ts +82 -0
- package/esm/configuration/slotFacade.js +89 -0
- package/esm/configuration/slotShape.d.ts +12 -0
- package/esm/configuration/slotShape.js +84 -0
- package/esm/configuration/slotValueUtils.d.ts +17 -0
- package/esm/configuration/slotValueUtils.js +25 -0
- package/esm/configuration/tabixIndexFields.d.ts +44 -0
- package/esm/configuration/tabixIndexFields.js +45 -0
- package/esm/configuration/tabixShorthand.d.ts +34 -0
- package/esm/configuration/tabixShorthand.js +45 -0
- package/esm/configuration/types.d.ts +170 -7
- package/esm/data_adapters/BaseAdapter/BaseAdapter.d.ts +24 -10
- package/esm/data_adapters/BaseAdapter/BaseAdapter.js +23 -15
- package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.d.ts +120 -7
- package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.js +99 -27
- package/esm/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.d.ts +1 -0
- package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.d.ts +13 -5
- package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.js +9 -7
- package/esm/data_adapters/BaseAdapter/BaseTextSearchAdapter.d.ts +2 -1
- package/esm/data_adapters/BaseAdapter/CytobandAdapter.d.ts +7 -0
- package/esm/data_adapters/BaseAdapter/RegionsAdapter.d.ts +2 -1
- package/esm/data_adapters/BaseAdapter/getAdapterId.d.ts +2 -0
- package/esm/data_adapters/BaseAdapter/getAdapterId.js +9 -0
- package/esm/data_adapters/BaseAdapter/index.d.ts +6 -4
- package/esm/data_adapters/BaseAdapter/index.js +5 -5
- package/esm/data_adapters/BaseAdapter/stats.d.ts +5 -5
- package/esm/data_adapters/BaseAdapter/stats.js +48 -22
- package/esm/data_adapters/BaseAdapter/types.d.ts +10 -8
- package/esm/data_adapters/BaseAdapter/types.js +1 -0
- package/esm/data_adapters/BaseAdapter/util.d.ts +5 -1
- package/esm/data_adapters/BaseAdapter/util.js +14 -3
- package/esm/data_adapters/CytobandAdapter/CytobandAdapter.d.ts +1 -1
- package/esm/data_adapters/CytobandAdapter/CytobandAdapter.js +4 -4
- package/esm/data_adapters/CytobandAdapter/configSchema.d.ts +36 -4
- package/esm/data_adapters/CytobandAdapter/configSchema.js +46 -2
- package/esm/data_adapters/CytobandAdapter/index.js +3 -3
- package/esm/data_adapters/adapterSessionRefcount.d.ts +61 -0
- package/esm/data_adapters/adapterSessionRefcount.js +96 -0
- package/esm/data_adapters/dataAdapterCache.d.ts +35 -1
- package/esm/data_adapters/dataAdapterCache.js +62 -22
- package/esm/data_adapters/getFeatureAdapter.d.ts +22 -0
- package/esm/data_adapters/getFeatureAdapter.js +27 -0
- package/esm/data_adapters/getSequenceSubAdapter.d.ts +21 -0
- package/esm/data_adapters/getSequenceSubAdapter.js +44 -0
- package/esm/pluggableElementTypes/AdapterType.d.ts +52 -2
- package/esm/pluggableElementTypes/AdapterType.js +44 -5
- package/esm/pluggableElementTypes/AddTrackWorkflowType.d.ts +6 -1
- package/esm/pluggableElementTypes/AddTrackWorkflowType.js +3 -1
- package/esm/pluggableElementTypes/ConnectionType.d.ts +5 -5
- package/esm/pluggableElementTypes/ConnectionType.js +1 -1
- package/esm/pluggableElementTypes/DisplayType.d.ts +10 -0
- package/esm/pluggableElementTypes/DisplayType.js +14 -1
- package/esm/pluggableElementTypes/InternetAccountType.js +1 -1
- package/esm/pluggableElementTypes/PluggableElementBase.d.ts +13 -0
- package/esm/pluggableElementTypes/PluggableElementBase.js +13 -0
- package/esm/pluggableElementTypes/RpcMethodType.d.ts +132 -12
- package/esm/pluggableElementTypes/RpcMethodType.js +263 -98
- package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.d.ts +19 -9
- package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.js +26 -20
- package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegion.d.ts +5 -0
- package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegion.js +18 -0
- package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegions.d.ts +5 -0
- package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegions.js +10 -0
- package/esm/pluggableElementTypes/TextSearchAdapterType.d.ts +3 -3
- package/esm/pluggableElementTypes/TextSearchAdapterType.js +3 -1
- package/esm/pluggableElementTypes/TrackType.d.ts +2 -1
- package/esm/pluggableElementTypes/TrackType.js +1 -1
- package/esm/pluggableElementTypes/ViewType.d.ts +2 -1
- package/esm/pluggableElementTypes/ViewType.js +9 -2
- package/esm/pluggableElementTypes/WidgetType.d.ts +2 -2
- package/esm/pluggableElementTypes/WidgetType.js +1 -1
- package/esm/pluggableElementTypes/addMenuItems.d.ts +87 -0
- package/esm/pluggableElementTypes/addMenuItems.js +82 -0
- package/esm/pluggableElementTypes/extendElementType.d.ts +30 -0
- package/esm/pluggableElementTypes/extendElementType.js +68 -0
- package/esm/pluggableElementTypes/index.d.ts +7 -7
- package/esm/pluggableElementTypes/index.js +24 -14
- package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts +70 -15
- package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.js +90 -10
- package/esm/pluggableElementTypes/models/BaseDisplayModel.d.ts +605 -84
- package/esm/pluggableElementTypes/models/BaseDisplayModel.js +172 -64
- package/esm/pluggableElementTypes/models/BaseTrackModel.d.ts +195 -35
- package/esm/pluggableElementTypes/models/BaseTrackModel.js +332 -85
- package/esm/pluggableElementTypes/models/BaseViewModel.d.ts +167 -16
- package/esm/pluggableElementTypes/models/BaseViewModel.js +111 -16
- package/esm/pluggableElementTypes/models/HighlightsMixin.d.ts +51 -0
- package/esm/pluggableElementTypes/models/HighlightsMixin.js +78 -0
- package/esm/pluggableElementTypes/models/InternetAccountModel.d.ts +163 -29
- package/esm/pluggableElementTypes/models/InternetAccountModel.js +218 -48
- package/esm/pluggableElementTypes/models/assertDisplayContract.d.ts +174 -0
- package/esm/pluggableElementTypes/models/assertDisplayContract.js +246 -0
- package/esm/pluggableElementTypes/models/baseConnectionConfig.d.ts +22 -8
- package/esm/pluggableElementTypes/models/baseConnectionConfig.js +18 -2
- package/esm/pluggableElementTypes/models/baseInternetAccountConfig.d.ts +39 -20
- package/esm/pluggableElementTypes/models/baseInternetAccountConfig.js +23 -2
- package/esm/pluggableElementTypes/models/baseTrackConfig.d.ts +181 -65
- package/esm/pluggableElementTypes/models/baseTrackConfig.js +191 -89
- package/esm/pluggableElementTypes/models/components/SaveTrackData.d.ts +3 -8
- package/esm/pluggableElementTypes/models/components/SaveTrackData.js +113 -139
- package/esm/pluggableElementTypes/models/components/fetchTrackData.d.ts +55 -0
- package/esm/pluggableElementTypes/models/components/fetchTrackData.js +83 -0
- package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.d.ts +40 -0
- package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.js +115 -0
- package/esm/pluggableElementTypes/models/index.d.ts +6 -3
- package/esm/pluggableElementTypes/models/index.js +10 -8
- package/esm/pluggableElementTypes/models/migrateTrackConfig.d.ts +34 -0
- package/esm/pluggableElementTypes/models/migrateTrackConfig.js +54 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/bed.js +75 -7
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.d.ts +9 -3
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.js +153 -103
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.d.ts +6 -1
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.js +70 -74
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/types.d.ts +9 -1
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/util.d.ts +21 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/util.js +51 -0
- package/esm/pluggableElementTypes/models/uriMatchesDomains.d.ts +29 -0
- package/esm/pluggableElementTypes/models/uriMatchesDomains.js +62 -0
- package/esm/pluggableElementTypes/renderers/util/serializableFilterChain.d.ts +5 -4
- package/esm/pluggableElementTypes/renderers/util/serializableFilterChain.js +20 -10
- package/esm/pluginDefinitions.d.ts +198 -0
- package/esm/pluginDefinitions.js +220 -0
- package/esm/rpc/BaseRpcDriver.d.ts +27 -35
- package/esm/rpc/BaseRpcDriver.js +74 -107
- package/esm/rpc/MainThreadRpcDriver.d.ts +9 -10
- package/esm/rpc/MainThreadRpcDriver.js +18 -29
- package/esm/rpc/RpcClient.d.ts +38 -0
- package/esm/rpc/RpcClient.js +154 -0
- package/esm/rpc/RpcManager.d.ts +116 -27
- package/esm/rpc/RpcManager.js +177 -50
- package/esm/rpc/RpcRegistry.d.ts +265 -0
- package/esm/rpc/RpcRegistry.js +1 -0
- package/esm/rpc/RpcServer.d.ts +41 -0
- package/esm/rpc/RpcServer.js +235 -0
- package/esm/rpc/WebWorkerRpcDriver.d.ts +71 -24
- package/esm/rpc/WebWorkerRpcDriver.js +312 -27
- package/esm/rpc/byteBudget.d.ts +49 -0
- package/esm/rpc/byteBudget.js +50 -0
- package/esm/rpc/configSchema.d.ts +27 -5
- package/esm/rpc/configSchema.js +40 -16
- package/esm/rpc/coreRpcMethods.d.ts +2 -5
- package/esm/rpc/coreRpcMethods.js +9 -12
- package/esm/rpc/explainTransferError.d.ts +35 -0
- package/esm/rpc/explainTransferError.js +158 -0
- package/esm/rpc/methods/CoreFreeResources.d.ts +19 -4
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- package/esm/util/when.js +0 -1
- /package/esm/{data_adapters/BaseAdapter/BaseOptions.js → configuration/promotablePin.js} +0 -0
- /package/esm/{util/layouts/BaseLayout.js → data_adapters/BaseAdapter/CytobandAdapter.js} +0 -0
package/esm/ReExports/list.js
CHANGED
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@@ -1,3 +1,18 @@
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1
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+
import { MUI_COMPONENT_NAMES } from './muiComponentNames.js';
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2
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+
/**
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3
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+
* Used by plugin build systems to determine if a module is provided by JBrowse
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4
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+
* globally and thus doesn't need to be bundled. A check in ./modules.tsx makes
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5
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* sure this is in sync with the re-exported modules.
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*
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* Using this instead of just Object.keys(modules) allows this file to be
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8
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* easily used by downstream tooling like simple esbuild scripts, rollup
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* configs, etc. without actually importing all the modules in modules.tsx,
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* which a Object.keys(modules) would do
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*/
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// Per-component MUI subpaths, and the legacy `@material-ui/core/*` aliases
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13
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// below, both derived from the one name list — see muiComponentNames.ts for why
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14
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+
// that list is its own MUI-free module.
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const muiComponentSubpaths = MUI_COMPONENT_NAMES.map(n => `@mui/material/${n}`);
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16
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export default [
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17
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'mobx',
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18
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'@jbrowse/mobx-state-tree',
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@@ -16,260 +31,70 @@ export default [
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31
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'@mui/material',
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32
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'@mui/material/styles',
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33
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'@material-ui/core/styles',
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19
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-
'@material-ui/core/
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20
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-
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'@material-ui/core/AccordionDetails',
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'@material-ui/core/AccordionSummary',
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'@material-ui/core/Alert',
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'@material-ui/core/AlertTitle',
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'@material-ui/core/Autocomplete',
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'@material-ui/core/Avatar',
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'@material-ui/core/AvatarGroup',
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'@material-ui/core/Backdrop',
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'@material-ui/core/Badge',
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'@material-ui/core/Box',
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'@material-ui/core/Breadcrumbs',
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'@material-ui/core/Button',
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'@material-ui/core/ButtonGroup',
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'@material-ui/core/Card',
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'@material-ui/core/CardActions',
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'@material-ui/core/CardActionArea',
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'@material-ui/core/CardContent',
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'@material-ui/core/CardHeader',
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'@material-ui/core/CardMedia',
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'@material-ui/core/CircularProgress',
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'@material-ui/core/Collapse',
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'@material-ui/core/ClickAwayListener',
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'@material-ui/core/Chip',
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'@material-ui/core/Checkbox',
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'@material-ui/core/Container',
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'@material-ui/core/Dialog',
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'@material-ui/core/DialogActions',
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'@material-ui/core/DialogTitle',
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'@material-ui/core/DialogContent',
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'@material-ui/core/DialogContentText',
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'@material-ui/core/Divider',
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'@material-ui/core/Drawer',
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'@material-ui/core/Fab',
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'@material-ui/core/Fade',
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'@material-ui/core/FilledInput',
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'@material-ui/core/FormLabel',
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'@material-ui/core/FormControl',
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'@material-ui/core/FormControlLabel',
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'@material-ui/core/FormHelperText',
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'@material-ui/core/FormGroup',
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'@material-ui/core/Grid',
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'@material-ui/core/Grid2',
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'@material-ui/core/Grow',
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'@material-ui/core/Icon',
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'@material-ui/core/IconButton',
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'@material-ui/core/Input',
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'@material-ui/core/InputBase',
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'@material-ui/core/InputLabel',
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'@material-ui/core/InputAdornment',
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'@material-ui/core/Link',
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'@material-ui/core/LinearProgress',
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'@material-ui/core/List',
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'@material-ui/core/ListItem',
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'@material-ui/core/ListItemAvatar',
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'@material-ui/core/ListItemButton',
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'@material-ui/core/ListItemSecondaryAction',
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'@material-ui/core/ListItemIcon',
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'@material-ui/core/ListSubheader',
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'@material-ui/core/ListItemText',
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'@material-ui/core/Menu',
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'@material-ui/core/MenuItem',
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'@material-ui/core/MenuList',
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'@material-ui/core/Modal',
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'@material-ui/core/NativeSelect',
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'@material-ui/core/OutlinedInput',
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'@material-ui/core/Pagination',
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'@material-ui/core/PaginationItem',
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'@material-ui/core/Paper',
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'@material-ui/core/Popover',
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'@material-ui/core/Popper',
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'@material-ui/core/Portal',
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'@material-ui/core/Radio',
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'@material-ui/core/RadioGroup',
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'@material-ui/core/Rating',
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-
'@material-ui/core/ScopedCssBaseline',
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'@material-ui/core/Select',
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'@material-ui/core/Skeleton',
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'@material-ui/core/Slider',
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99
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'@material-ui/core/Snackbar',
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'@material-ui/core/SnackbarContent',
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'@material-ui/core/SpeedDial',
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'@material-ui/core/SpeedDialAction',
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'@material-ui/core/SpeedDialIcon',
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'@material-ui/core/Stack',
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-
'@material-ui/core/Step',
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'@material-ui/core/StepButton',
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'@material-ui/core/StepConnector',
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-
'@material-ui/core/StepLabel',
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-
'@material-ui/core/StepIcon',
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-
'@material-ui/core/Stepper',
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-
'@material-ui/core/SvgIcon',
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112
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-
'@material-ui/core/Switch',
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-
'@material-ui/core/Tab',
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-
'@material-ui/core/Table',
|
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115
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'@material-ui/core/TableBody',
|
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116
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-
'@material-ui/core/TableCell',
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117
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-
'@material-ui/core/TableContainer',
|
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118
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-
'@material-ui/core/TableFooter',
|
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119
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-
'@material-ui/core/TableHead',
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-
'@material-ui/core/TablePagination',
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121
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-
'@material-ui/core/TableRow',
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122
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-
'@material-ui/core/TableSortLabel',
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123
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-
'@material-ui/core/Tabs',
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124
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-
'@material-ui/core/TextField',
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125
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'@material-ui/core/TextareaAutosize',
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126
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-
'@material-ui/core/ToggleButton',
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127
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-
'@material-ui/core/ToggleButtonGroup',
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128
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'@material-ui/core/Toolbar',
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'@material-ui/core/Tooltip',
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130
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-
'@material-ui/core/Typography',
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131
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-
'@mui/material/Accordion',
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132
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'@mui/material/AccordionActions',
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133
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-
'@mui/material/AccordionDetails',
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134
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'@mui/material/AccordionSummary',
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135
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-
'@mui/material/Alert',
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136
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-
'@mui/material/AlertTitle',
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137
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-
'@mui/material/Autocomplete',
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138
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-
'@mui/material/Avatar',
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139
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-
'@mui/material/AvatarGroup',
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140
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-
'@mui/material/Backdrop',
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141
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-
'@mui/material/Badge',
|
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142
|
-
'@mui/material/Box',
|
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143
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-
'@mui/material/Breadcrumbs',
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144
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-
'@mui/material/Button',
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145
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-
'@mui/material/ButtonGroup',
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146
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'@mui/material/Card',
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147
|
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'@mui/material/CardActions',
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148
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'@mui/material/CardActionArea',
|
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149
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-
'@mui/material/CardContent',
|
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150
|
-
'@mui/material/CardHeader',
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151
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-
'@mui/material/CardMedia',
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152
|
-
'@mui/material/CircularProgress',
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153
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'@mui/material/Collapse',
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154
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-
'@mui/material/ClickAwayListener',
|
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155
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-
'@mui/material/Chip',
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156
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-
'@mui/material/Checkbox',
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157
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-
'@mui/material/Container',
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158
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-
'@mui/material/Dialog',
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159
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-
'@mui/material/DialogActions',
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-
'@mui/material/DialogTitle',
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-
'@mui/material/DialogContent',
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'@mui/material/DialogContentText',
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163
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-
'@mui/material/Divider',
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'@mui/material/Drawer',
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'@mui/material/Fab',
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'@mui/material/Fade',
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'@mui/material/FilledInput',
|
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168
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-
'@mui/material/FormLabel',
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'@mui/material/FormControl',
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170
|
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'@mui/material/FormControlLabel',
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'@mui/material/FormHelperText',
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172
|
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'@mui/material/FormGroup',
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'@mui/material/Grid',
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|
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'@mui/material/Grid2',
|
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175
|
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'@mui/material/Grow',
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|
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'@mui/material/Icon',
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177
|
-
'@mui/material/IconButton',
|
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178
|
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'@mui/material/Input',
|
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179
|
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'@mui/material/InputBase',
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180
|
-
'@mui/material/InputLabel',
|
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181
|
-
'@mui/material/InputAdornment',
|
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182
|
-
'@mui/material/Link',
|
|
183
|
-
'@mui/material/LinearProgress',
|
|
184
|
-
'@mui/material/List',
|
|
185
|
-
'@mui/material/ListItem',
|
|
186
|
-
'@mui/material/ListItemAvatar',
|
|
187
|
-
'@mui/material/ListItemButton',
|
|
188
|
-
'@mui/material/ListItemSecondaryAction',
|
|
189
|
-
'@mui/material/ListItemIcon',
|
|
190
|
-
'@mui/material/ListSubheader',
|
|
191
|
-
'@mui/material/ListItemText',
|
|
192
|
-
'@mui/material/Menu',
|
|
193
|
-
'@mui/material/MenuItem',
|
|
194
|
-
'@mui/material/MenuList',
|
|
195
|
-
'@mui/material/Modal',
|
|
196
|
-
'@mui/material/NativeSelect',
|
|
197
|
-
'@mui/material/OutlinedInput',
|
|
198
|
-
'@mui/material/Pagination',
|
|
199
|
-
'@mui/material/PaginationItem',
|
|
200
|
-
'@mui/material/Paper',
|
|
201
|
-
'@mui/material/Popover',
|
|
202
|
-
'@mui/material/Popper',
|
|
203
|
-
'@mui/material/Portal',
|
|
204
|
-
'@mui/material/Radio',
|
|
205
|
-
'@mui/material/RadioGroup',
|
|
206
|
-
'@mui/material/Rating',
|
|
207
|
-
'@mui/material/ScopedCssBaseline',
|
|
208
|
-
'@mui/material/Select',
|
|
209
|
-
'@mui/material/Skeleton',
|
|
210
|
-
'@mui/material/Slider',
|
|
211
|
-
'@mui/material/Snackbar',
|
|
212
|
-
'@mui/material/SnackbarContent',
|
|
213
|
-
'@mui/material/SpeedDial',
|
|
214
|
-
'@mui/material/SpeedDialAction',
|
|
215
|
-
'@mui/material/SpeedDialIcon',
|
|
216
|
-
'@mui/material/Stack',
|
|
217
|
-
'@mui/material/Step',
|
|
218
|
-
'@mui/material/StepButton',
|
|
219
|
-
'@mui/material/StepConnector',
|
|
220
|
-
'@mui/material/StepLabel',
|
|
221
|
-
'@mui/material/StepIcon',
|
|
222
|
-
'@mui/material/Stepper',
|
|
223
|
-
'@mui/material/SvgIcon',
|
|
224
|
-
'@mui/material/Switch',
|
|
225
|
-
'@mui/material/Tab',
|
|
226
|
-
'@mui/material/Table',
|
|
227
|
-
'@mui/material/TableBody',
|
|
228
|
-
'@mui/material/TableCell',
|
|
229
|
-
'@mui/material/TableContainer',
|
|
230
|
-
'@mui/material/TableFooter',
|
|
231
|
-
'@mui/material/TableHead',
|
|
232
|
-
'@mui/material/TablePagination',
|
|
233
|
-
'@mui/material/TableRow',
|
|
234
|
-
'@mui/material/TableSortLabel',
|
|
235
|
-
'@mui/material/Tabs',
|
|
236
|
-
'@mui/material/TextField',
|
|
237
|
-
'@mui/material/TextareaAutosize',
|
|
238
|
-
'@mui/material/ToggleButton',
|
|
239
|
-
'@mui/material/ToggleButtonGroup',
|
|
240
|
-
'@mui/material/Toolbar',
|
|
241
|
-
'@mui/material/Tooltip',
|
|
242
|
-
'@mui/material/Typography',
|
|
34
|
+
...muiComponentSubpaths.map(p => p.replace('@mui/material/', '@material-ui/core/')),
|
|
35
|
+
...muiComponentSubpaths,
|
|
243
36
|
'@material-ui/lab/ToggleButton',
|
|
244
37
|
'@material-ui/lab/ToggleButtonGroup',
|
|
245
38
|
'@material-ui/lab/Autocomplete',
|
|
246
39
|
'@material-ui/lab/Alert',
|
|
247
40
|
'@material-ui/lab',
|
|
41
|
+
// The `@jbrowse/core` subpaths below are the ones a plugin may import and get
|
|
42
|
+
// the host's copy of. Each carries a `#reexport <what it provides>` line,
|
|
43
|
+
// which renders the table in the dependencies-and-re-exports guide
|
|
44
|
+
// (website/scripts/api-docs/generateReExportDocs.ts) — so the guide stops
|
|
45
|
+
// restating this list, which is what left it five paths short. A new subpath
|
|
46
|
+
// needs the tag or the generator fails.
|
|
47
|
+
//
|
|
48
|
+
// Only the `@jbrowse/core` entries are tagged: the framework and MUI ones
|
|
49
|
+
// above are described by category in the guide's prose, not one row each.
|
|
50
|
+
// #reexport The base `Plugin` class your plugin extends
|
|
248
51
|
'@jbrowse/core/Plugin',
|
|
52
|
+
// #reexport `ViewType`, `AdapterType`, `DisplayType`, `TrackType`, `WidgetType` in one import, for the `install` method that registers several
|
|
249
53
|
'@jbrowse/core/pluggableElementTypes',
|
|
54
|
+
// #reexport Just the `ViewType` class, registered with `addViewType`
|
|
250
55
|
'@jbrowse/core/pluggableElementTypes/ViewType',
|
|
56
|
+
// #reexport Just the `AdapterType` class, registered with `addAdapterType`
|
|
251
57
|
'@jbrowse/core/pluggableElementTypes/AdapterType',
|
|
58
|
+
// #reexport Just the `DisplayType` class, registered with `addDisplayType`
|
|
252
59
|
'@jbrowse/core/pluggableElementTypes/DisplayType',
|
|
60
|
+
// #reexport Just the `TrackType` class, registered with `addTrackType`
|
|
253
61
|
'@jbrowse/core/pluggableElementTypes/TrackType',
|
|
62
|
+
// #reexport Just the `WidgetType` class, registered with `addWidgetType`
|
|
254
63
|
'@jbrowse/core/pluggableElementTypes/WidgetType',
|
|
64
|
+
// #reexport Base MST models for tracks and displays to compose with
|
|
255
65
|
'@jbrowse/core/pluggableElementTypes/models',
|
|
256
|
-
|
|
257
|
-
'@jbrowse/core/pluggableElementTypes/renderers/CircularChordRendererType',
|
|
258
|
-
'@jbrowse/core/pluggableElementTypes/renderers/BoxRendererType',
|
|
259
|
-
'@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType',
|
|
260
|
-
'@jbrowse/core/pluggableElementTypes/renderers/RendererType',
|
|
66
|
+
// #reexport `ConfigurationSchema`, `ConfigurationReference`, `readConfObject`, `getConf`
|
|
261
67
|
'@jbrowse/core/configuration',
|
|
68
|
+
// #reexport Reusable MST types like `ElementId` and `Region`
|
|
262
69
|
'@jbrowse/core/util/types/mst',
|
|
70
|
+
// #reexport Shared UI components — dialogs, menus, error and loading states
|
|
263
71
|
'@jbrowse/core/ui',
|
|
72
|
+
// #reexport The JBrowse MUI theme
|
|
264
73
|
'@jbrowse/core/ui/theme',
|
|
74
|
+
// #reexport The same colors and `resolvePalette` without Material UI in the module graph, for worker and renderer code
|
|
75
|
+
'@jbrowse/core/ui/palette',
|
|
76
|
+
// #reexport The hover tooltip, kept out of the `ui` barrel so @floating-ui stays off the startup path
|
|
77
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+
'@jbrowse/core/ui/BaseTooltip',
|
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78
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+
// #reexport Core helpers: `getSession`, `getContainingView`, `Feature`, region and coordinate utilities
|
|
265
79
|
'@jbrowse/core/util',
|
|
80
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+
// #reexport Color parsing and manipulation helpers
|
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81
|
'@jbrowse/core/util/color',
|
|
82
|
+
// #reexport Feature layout (packing) helpers
|
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267
83
|
'@jbrowse/core/util/layouts',
|
|
84
|
+
// #reexport Track and adapter config helpers
|
|
268
85
|
'@jbrowse/core/util/tracks',
|
|
86
|
+
// #reexport The 1D (bp↔px) view model the linear views are built on
|
|
269
87
|
'@jbrowse/core/util/Base1DViewModel',
|
|
88
|
+
// #reexport `openLocation` and the file-handle helpers
|
|
270
89
|
'@jbrowse/core/util/io',
|
|
90
|
+
// #reexport Helpers for inspecting MST types
|
|
271
91
|
'@jbrowse/core/util/mst-reflection',
|
|
92
|
+
// #reexport The RxJS re-exports an adapter's `getFeatures` stream is built from
|
|
272
93
|
'@jbrowse/core/util/rxjs',
|
|
94
|
+
// #reexport `FeatureDetails`, `BaseCard` and the other feature-detail building blocks
|
|
273
95
|
'@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail',
|
|
96
|
+
// #reexport `BaseFeatureDataAdapter` and the adapter base classes
|
|
274
97
|
'@jbrowse/core/data_adapters/BaseAdapter',
|
|
98
|
+
// #reexport `getAdapter`, the worker-side adapter cache an RPC method resolves its adapter through
|
|
99
|
+
'@jbrowse/core/data_adapters/dataAdapterCache',
|
|
275
100
|
];
|
package/esm/ReExports/modules.js
CHANGED
|
@@ -1,46 +1,52 @@
|
|
|
1
|
+
// eslint-disable-next-line no-restricted-imports
|
|
1
2
|
import * as React from 'react';
|
|
2
3
|
import * as mst from '@jbrowse/mobx-state-tree';
|
|
3
4
|
import { alpha, createTheme, useTheme } from '@mui/material';
|
|
4
|
-
import
|
|
5
|
+
import SvgIcon, { createSvgIcon } from '@mui/material/SvgIcon';
|
|
5
6
|
import * as MUIUtils from '@mui/material/utils';
|
|
6
|
-
import { useGridApiContext, useGridApiRef, useGridRootProps, } from '@mui/x-data-grid';
|
|
7
7
|
import * as mobx from 'mobx';
|
|
8
8
|
import * as mxreact from 'mobx-react';
|
|
9
|
-
import * as ReactJSXRuntime from 'react/jsx-runtime';
|
|
10
9
|
import * as ReactDom from 'react-dom';
|
|
11
10
|
import * as ReactDomClient from 'react-dom/client';
|
|
12
|
-
import
|
|
13
|
-
import
|
|
14
|
-
import
|
|
15
|
-
import
|
|
16
|
-
import
|
|
17
|
-
import
|
|
18
|
-
import
|
|
19
|
-
import
|
|
20
|
-
import
|
|
21
|
-
import
|
|
22
|
-
import
|
|
23
|
-
import
|
|
24
|
-
import
|
|
25
|
-
import * as
|
|
26
|
-
import * as
|
|
27
|
-
import
|
|
28
|
-
import
|
|
29
|
-
import * as
|
|
30
|
-
import * as
|
|
31
|
-
import * as
|
|
32
|
-
import * as
|
|
33
|
-
import * as
|
|
34
|
-
import
|
|
35
|
-
import * as
|
|
36
|
-
import
|
|
37
|
-
import
|
|
38
|
-
import
|
|
39
|
-
import
|
|
40
|
-
import
|
|
41
|
-
import
|
|
42
|
-
import
|
|
43
|
-
|
|
11
|
+
import * as ReactJSXRuntime from 'react/jsx-runtime';
|
|
12
|
+
import Plugin from '../Plugin.js';
|
|
13
|
+
import * as Configuration from '../configuration/index.js';
|
|
14
|
+
import * as BaseAdapterExports from '../data_adapters/BaseAdapter/index.js';
|
|
15
|
+
import * as dataAdapterCache from '../data_adapters/dataAdapterCache.js';
|
|
16
|
+
import AdapterType from '../pluggableElementTypes/AdapterType.js';
|
|
17
|
+
import DisplayType from '../pluggableElementTypes/DisplayType.js';
|
|
18
|
+
import TrackType from '../pluggableElementTypes/TrackType.js';
|
|
19
|
+
import ViewType from '../pluggableElementTypes/ViewType.js';
|
|
20
|
+
import WidgetType from '../pluggableElementTypes/WidgetType.js';
|
|
21
|
+
import * as pluggableElementTypes from '../pluggableElementTypes/index.js';
|
|
22
|
+
import * as pluggableElementTypeModels from '../pluggableElementTypes/models/index.js';
|
|
23
|
+
import * as coreUi from '../ui/index.js';
|
|
24
|
+
import * as corePalette from '../ui/palette.js';
|
|
25
|
+
import * as coreTheme from '../ui/theme.js';
|
|
26
|
+
import Base1DView from '../util/Base1DViewModel.js';
|
|
27
|
+
import * as coreColor from '../util/color/index.js';
|
|
28
|
+
import * as coreIo from '../util/io/index.js';
|
|
29
|
+
import * as coreLayouts from '../util/layouts/index.js';
|
|
30
|
+
import * as coreMstReflection from '../util/mst-reflection.js';
|
|
31
|
+
import * as rxjs from '../util/rxjs.js';
|
|
32
|
+
import * as trackUtils from '../util/tracks.js';
|
|
33
|
+
import { cx, keyframes, makeStyles } from '../util/tss-react/index.js';
|
|
34
|
+
import * as mstTypes from '../util/types/mst.js';
|
|
35
|
+
import { BaseFeatureDetail } from './BaseFeatureDetails.js';
|
|
36
|
+
import { DataGridEntries } from './MuiDataGridReExports.js';
|
|
37
|
+
import { Entries } from './MuiReExports.js';
|
|
38
|
+
import { MUIStyles } from './MuiStylesReExports.js';
|
|
39
|
+
import { lazyMap } from './lazify.js';
|
|
40
|
+
import reExportsList from './list.js';
|
|
41
|
+
import * as coreUtil from './publicUtil.js';
|
|
42
|
+
function makeLegacyMakeStyles() {
|
|
43
|
+
return (args) => {
|
|
44
|
+
const useStyles = makeStyles()(args);
|
|
45
|
+
return () => useStyles().classes;
|
|
46
|
+
};
|
|
47
|
+
}
|
|
48
|
+
const tssReact = { cx, keyframes, makeStyles };
|
|
49
|
+
const legacyMakeStyles = makeLegacyMakeStyles();
|
|
44
50
|
const libs = {
|
|
45
51
|
mobx,
|
|
46
52
|
'@jbrowse/mobx-state-tree': mst,
|
|
@@ -50,32 +56,24 @@ const libs = {
|
|
|
50
56
|
'react-dom': ReactDom,
|
|
51
57
|
'react-dom/client': ReactDomClient,
|
|
52
58
|
'mobx-react': mxreact,
|
|
59
|
+
// Only lazy component entries are re-exported. The grid *hooks*
|
|
60
|
+
// (useGridApiContext/useGridApiRef/useGridRootProps) are intentionally left
|
|
61
|
+
// out: statically importing them here pulled the entire ~1.2 MB
|
|
62
|
+
// @mui/x-data-grid package into the eager first-paint graph, defeating the
|
|
63
|
+
// lazy import('@mui/x-data-grid') in MuiDataGridReExports. First-party code
|
|
64
|
+
// that needs the hooks imports them directly from '@mui/x-data-grid'.
|
|
53
65
|
'@mui/x-data-grid': {
|
|
54
|
-
useGridApiContext,
|
|
55
|
-
useGridApiRef,
|
|
56
|
-
useGridRootProps,
|
|
57
66
|
...lazyMap(DataGridEntries),
|
|
58
67
|
},
|
|
59
68
|
'@mui/material/utils': MUIUtils,
|
|
60
69
|
'@material-ui/core/utils': MUIUtils,
|
|
61
|
-
'tss-react':
|
|
62
|
-
|
|
63
|
-
keyframes,
|
|
64
|
-
makeStyles,
|
|
65
|
-
},
|
|
66
|
-
'tss-react/mui': {
|
|
67
|
-
cx,
|
|
68
|
-
keyframes,
|
|
69
|
-
makeStyles,
|
|
70
|
-
},
|
|
70
|
+
'tss-react': tssReact,
|
|
71
|
+
'tss-react/mui': tssReact,
|
|
71
72
|
'@material-ui/core': {
|
|
72
73
|
...lazyMap(Entries),
|
|
73
74
|
useTheme,
|
|
74
75
|
alpha,
|
|
75
|
-
makeStyles:
|
|
76
|
-
const useStyles = makeStyles()(args);
|
|
77
|
-
return () => useStyles().classes;
|
|
78
|
-
},
|
|
76
|
+
makeStyles: legacyMakeStyles,
|
|
79
77
|
},
|
|
80
78
|
'@mui/material': {
|
|
81
79
|
...lazyMap(Entries),
|
|
@@ -85,20 +83,27 @@ const libs = {
|
|
|
85
83
|
},
|
|
86
84
|
...lazyMap(Entries, '@mui/material/'),
|
|
87
85
|
...lazyMap(Entries, '@material-ui/core/'),
|
|
86
|
+
// @mui/icons-material — bundled into external plugins — reads the
|
|
87
|
+
// `createSvgIcon` *named* export from @mui/material/SvgIcon, but lazyMap
|
|
88
|
+
// exposes only the component (its default). SvgIcon is a primitive that's
|
|
89
|
+
// eagerly loaded in practice, so expose it directly with createSvgIcon
|
|
90
|
+
// attached: a default import still lands on a usable component (rollup-plugin-
|
|
91
|
+
// external-globals substitutes the value itself, esbuild's globalExternals
|
|
92
|
+
// reads `.default`), while the named import and icons-material's CJS
|
|
93
|
+
// `require(...).createSvgIcon` both find the util. A shallow copy carries the
|
|
94
|
+
// forwardRef's $$typeof/render so the shared SvgIcon export isn't mutated.
|
|
95
|
+
// Overrides the lazy entry above; verified against both bundlers.
|
|
96
|
+
// GMOD/jbrowse-components#5606.
|
|
97
|
+
'@mui/material/SvgIcon': Object.assign({}, SvgIcon, { createSvgIcon }),
|
|
88
98
|
'@mui/material/styles': {
|
|
89
99
|
...MUIStyles,
|
|
90
|
-
makeStyles:
|
|
91
|
-
const useStyles = makeStyles()(args);
|
|
92
|
-
return () => useStyles().classes;
|
|
93
|
-
},
|
|
100
|
+
makeStyles: legacyMakeStyles,
|
|
94
101
|
},
|
|
95
102
|
'@material-ui/core/styles': {
|
|
96
103
|
...MUIStyles,
|
|
97
|
-
makeStyles:
|
|
98
|
-
const useStyles = makeStyles()(args);
|
|
99
|
-
return () => useStyles().classes;
|
|
100
|
-
},
|
|
104
|
+
makeStyles: legacyMakeStyles,
|
|
101
105
|
},
|
|
106
|
+
// these are core in @mui/material, but used to be in @material-ui/lab
|
|
102
107
|
'@material-ui/lab/ToggleButton': Entries.ToggleButton,
|
|
103
108
|
'@material-ui/lab/ToggleButtonGroup': Entries.ToggleButtonGroup,
|
|
104
109
|
'@material-ui/lab/Autocomplete': Entries.Autocomplete,
|
|
@@ -110,11 +115,19 @@ const libs = {
|
|
|
110
115
|
ToggleButtonGroup: Entries.ToggleButtonGroup,
|
|
111
116
|
},
|
|
112
117
|
'@jbrowse/core/Plugin': Plugin,
|
|
113
|
-
'@jbrowse/core/pluggableElementTypes/renderers/RendererType': RendererType,
|
|
114
118
|
'@jbrowse/core/configuration': Configuration,
|
|
115
119
|
'@jbrowse/core/util/types/mst': mstTypes,
|
|
116
120
|
'@jbrowse/core/ui': coreUi,
|
|
117
121
|
'@jbrowse/core/ui/theme': coreTheme,
|
|
122
|
+
'@jbrowse/core/ui/palette': corePalette,
|
|
123
|
+
// BaseTooltip is deliberately absent from the '@jbrowse/core/ui' barrel: the
|
|
124
|
+
// re-export alone held @floating-ui (~266KB) on the startup path, since eager
|
|
125
|
+
// plugin entries import that barrel. Serving it as its own module behind
|
|
126
|
+
// React.lazy keeps it off that path while leaving external plugins a way to
|
|
127
|
+
// reach it -- published apollo deep-imports this exact path, and react-msaview
|
|
128
|
+
// (bundled by tview and msaview) reads it too, so dropping it from the barrel
|
|
129
|
+
// with no ABI home is what broke them.
|
|
130
|
+
...lazyMap({ BaseTooltip: React.lazy(() => import('../ui/BaseTooltip.js')) }, '@jbrowse/core/ui/'),
|
|
118
131
|
'@jbrowse/core/util': coreUtil,
|
|
119
132
|
'@jbrowse/core/util/color': coreColor,
|
|
120
133
|
'@jbrowse/core/util/layouts': coreLayouts,
|
|
@@ -130,14 +143,20 @@ const libs = {
|
|
|
130
143
|
'@jbrowse/core/pluggableElementTypes/TrackType': TrackType,
|
|
131
144
|
'@jbrowse/core/pluggableElementTypes/WidgetType': WidgetType,
|
|
132
145
|
'@jbrowse/core/pluggableElementTypes/models': pluggableElementTypeModels,
|
|
133
|
-
'@jbrowse/core/pluggableElementTypes/renderers/ServerSideRendererType': ServerSideRendererType,
|
|
134
|
-
'@jbrowse/core/pluggableElementTypes/renderers/CircularChordRendererType': CircularChordRendererType,
|
|
135
|
-
'@jbrowse/core/pluggableElementTypes/renderers/BoxRendererType': BoxRendererType,
|
|
136
|
-
'@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType': FeatureRendererType,
|
|
137
146
|
'@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail': BaseFeatureDetail,
|
|
138
147
|
'@jbrowse/core/data_adapters/BaseAdapter': BaseAdapterExports,
|
|
148
|
+
// `adapterCache` is module-level state, so a plugin that bundles its own copy
|
|
149
|
+
// of this file gets a second cache in the RPC worker — and `freeAdapterResources`,
|
|
150
|
+
// which CoreFreeResources calls on the host's copy when the last track using
|
|
151
|
+
// an adapter config closes, never sees it. The cache is the only strong
|
|
152
|
+
// reference to an adapter (see the comment on that function), so those
|
|
153
|
+
// adapters and everything they hold live as long as the worker. Serving the
|
|
154
|
+
// module is what makes an external RPC method share the host's cache.
|
|
155
|
+
'@jbrowse/core/data_adapters/dataAdapterCache': dataAdapterCache,
|
|
139
156
|
};
|
|
140
157
|
const libsList = Object.keys(libs);
|
|
158
|
+
// make sure that all the items in the ReExports/list array (used by build
|
|
159
|
+
// systems and such) are included here, and vice versa
|
|
141
160
|
const inLibsOnly = libsList.filter(mod => !reExportsList.includes(mod));
|
|
142
161
|
if (inLibsOnly.length > 0) {
|
|
143
162
|
throw new Error(`The following modules are in the modules libs, but not the re-exports list: ${inLibsOnly.join(', ')}`);
|
|
@@ -0,0 +1,18 @@
|
|
|
1
|
+
/**
|
|
2
|
+
* Every MUI component name the host re-exports to plugins.
|
|
3
|
+
*
|
|
4
|
+
* Its own module, with **no MUI imports**, because the two things that need it
|
|
5
|
+
* cannot both reach the other: `MuiReExports.ts` holds the components
|
|
6
|
+
* themselves, and `list.ts` must stay importable by bundler configs and
|
|
7
|
+
* esbuild scripts without pulling MUI in behind it (see that file's header).
|
|
8
|
+
* The names were therefore written out twice — 112 of them — and kept in
|
|
9
|
+
* agreement by a load-time throw in `modules.ts`.
|
|
10
|
+
*
|
|
11
|
+
* Declaring them here instead makes `Entries` a `Record` over this union, so a
|
|
12
|
+
* name with no component and a component with no name are both compile errors,
|
|
13
|
+
* and `list.ts` derives its subpaths by mapping. The runtime check in
|
|
14
|
+
* `modules.ts` stays: it still covers the framework and `@jbrowse/core` entries,
|
|
15
|
+
* which are not this list.
|
|
16
|
+
*/
|
|
17
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export declare const MUI_COMPONENT_NAMES: readonly ['Accordion', 'AccordionActions', 'AccordionDetails', 'AccordionSummary', 'Alert', 'AlertTitle', 'Autocomplete', 'Avatar', 'AvatarGroup', 'Backdrop', 'Badge', 'Box', 'Breadcrumbs', 'Button', 'ButtonGroup', 'Card', 'CardActions', 'CardActionArea', 'CardContent', 'CardHeader', 'CardMedia', 'Chip', 'CircularProgress', 'Collapse', 'ClickAwayListener', 'Checkbox', 'Container', 'Dialog', 'DialogActions', 'DialogTitle', 'DialogContent', 'DialogContentText', 'Divider', 'Drawer', 'Fab', 'Fade', 'FilledInput', 'FormLabel', 'FormControl', 'FormControlLabel', 'FormHelperText', 'FormGroup', 'Grid', 'Grid2', 'Grow', 'Icon', 'IconButton', 'Input', 'InputBase', 'InputLabel', 'InputAdornment', 'Link', 'LinearProgress', 'List', 'ListItem', 'ListItemAvatar', 'ListItemButton', 'ListItemSecondaryAction', 'ListItemIcon', 'ListSubheader', 'ListItemText', 'Menu', 'MenuItem', 'MenuList', 'Modal', 'NativeSelect', 'OutlinedInput', 'Pagination', 'PaginationItem', 'Paper', 'Popover', 'Popper', 'Portal', 'Radio', 'RadioGroup', 'Rating', 'ScopedCssBaseline', 'Select', 'Skeleton', 'Slider', 'Snackbar', 'SnackbarContent', 'SpeedDial', 'SpeedDialAction', 'SpeedDialIcon', 'Stack', 'Step', 'StepButton', 'StepConnector', 'StepLabel', 'StepIcon', 'Stepper', 'SvgIcon', 'Switch', 'Tab', 'Table', 'TableBody', 'TableCell', 'TableContainer', 'TableFooter', 'TableHead', 'TablePagination', 'TableRow', 'TableSortLabel', 'Tabs', 'TextField', 'TextareaAutosize', 'ToggleButton', 'ToggleButtonGroup', 'Toolbar', 'Tooltip', 'Typography'];
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export type MuiComponentName = (typeof MUI_COMPONENT_NAMES)[number];
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