@jbrowse/core 4.0.4 → 4.1.1

package/esm/util/crypto.js

@@ -0,0 +1,536 @@
+const SALT_PREFIX = 'Salted__';
+function isWebCryptoAvailable() {
+    return typeof crypto !== 'undefined' && crypto.subtle !== undefined;
+}
+const SBOX = new Uint8Array([
+    0x63, 0x7c, 0x77, 0x7b, 0xf2, 0x6b, 0x6f, 0xc5, 0x30, 0x01, 0x67, 0x2b, 0xfe,
+    0xd7, 0xab, 0x76, 0xca, 0x82, 0xc9, 0x7d, 0xfa, 0x59, 0x47, 0xf0, 0xad, 0xd4,
+    0xa2, 0xaf, 0x9c, 0xa4, 0x72, 0xc0, 0xb7, 0xfd, 0x93, 0x26, 0x36, 0x3f, 0xf7,
+    0xcc, 0x34, 0xa5, 0xe5, 0xf1, 0x71, 0xd8, 0x31, 0x15, 0x04, 0xc7, 0x23, 0xc3,
+    0x18, 0x96, 0x05, 0x9a, 0x07, 0x12, 0x80, 0xe2, 0xeb, 0x27, 0xb2, 0x75, 0x09,
+    0x83, 0x2c, 0x1a, 0x1b, 0x6e, 0x5a, 0xa0, 0x52, 0x3b, 0xd6, 0xb3, 0x29, 0xe3,
+    0x2f, 0x84, 0x53, 0xd1, 0x00, 0xed, 0x20, 0xfc, 0xb1, 0x5b, 0x6a, 0xcb, 0xbe,
+    0x39, 0x4a, 0x4c, 0x58, 0xcf, 0xd0, 0xef, 0xaa, 0xfb, 0x43, 0x4d, 0x33, 0x85,
+    0x45, 0xf9, 0x02, 0x7f, 0x50, 0x3c, 0x9f, 0xa8, 0x51, 0xa3, 0x40, 0x8f, 0x92,
+    0x9d, 0x38, 0xf5, 0xbc, 0xb6, 0xda, 0x21, 0x10, 0xff, 0xf3, 0xd2, 0xcd, 0x0c,
+    0x13, 0xec, 0x5f, 0x97, 0x44, 0x17, 0xc4, 0xa7, 0x7e, 0x3d, 0x64, 0x5d, 0x19,
+    0x73, 0x60, 0x81, 0x4f, 0xdc, 0x22, 0x2a, 0x90, 0x88, 0x46, 0xee, 0xb8, 0x14,
+    0xde, 0x5e, 0x0b, 0xdb, 0xe0, 0x32, 0x3a, 0x0a, 0x49, 0x06, 0x24, 0x5c, 0xc2,
+    0xd3, 0xac, 0x62, 0x91, 0x95, 0xe4, 0x79, 0xe7, 0xc8, 0x37, 0x6d, 0x8d, 0xd5,
+    0x4e, 0xa9, 0x6c, 0x56, 0xf4, 0xea, 0x65, 0x7a, 0xae, 0x08, 0xba, 0x78, 0x25,
+    0x2e, 0x1c, 0xa6, 0xb4, 0xc6, 0xe8, 0xdd, 0x74, 0x1f, 0x4b, 0xbd, 0x8b, 0x8a,
+    0x70, 0x3e, 0xb5, 0x66, 0x48, 0x03, 0xf6, 0x0e, 0x61, 0x35, 0x57, 0xb9, 0x86,
+    0xc1, 0x1d, 0x9e, 0xe1, 0xf8, 0x98, 0x11, 0x69, 0xd9, 0x8e, 0x94, 0x9b, 0x1e,
+    0x87, 0xe9, 0xce, 0x55, 0x28, 0xdf, 0x8c, 0xa1, 0x89, 0x0d, 0xbf, 0xe6, 0x42,
+    0x68, 0x41, 0x99, 0x2d, 0x0f, 0xb0, 0x54, 0xbb, 0x16,
+]);
+const SBOX_INV = new Uint8Array([
+    0x52, 0x09, 0x6a, 0xd5, 0x30, 0x36, 0xa5, 0x38, 0xbf, 0x40, 0xa3, 0x9e, 0x81,
+    0xf3, 0xd7, 0xfb, 0x7c, 0xe3, 0x39, 0x82, 0x9b, 0x2f, 0xff, 0x87, 0x34, 0x8e,
+    0x43, 0x44, 0xc4, 0xde, 0xe9, 0xcb, 0x54, 0x7b, 0x94, 0x32, 0xa6, 0xc2, 0x23,
+    0x3d, 0xee, 0x4c, 0x95, 0x0b, 0x42, 0xfa, 0xc3, 0x4e, 0x08, 0x2e, 0xa1, 0x66,
+    0x28, 0xd9, 0x24, 0xb2, 0x76, 0x5b, 0xa2, 0x49, 0x6d, 0x8b, 0xd1, 0x25, 0x72,
+    0xf8, 0xf6, 0x64, 0x86, 0x68, 0x98, 0x16, 0xd4, 0xa4, 0x5c, 0xcc, 0x5d, 0x65,
+    0xb6, 0x92, 0x6c, 0x70, 0x48, 0x50, 0xfd, 0xed, 0xb9, 0xda, 0x5e, 0x15, 0x46,
+    0x57, 0xa7, 0x8d, 0x9d, 0x84, 0x90, 0xd8, 0xab, 0x00, 0x8c, 0xbc, 0xd3, 0x0a,
+    0xf7, 0xe4, 0x58, 0x05, 0xb8, 0xb3, 0x45, 0x06, 0xd0, 0x2c, 0x1e, 0x8f, 0xca,
+    0x3f, 0x0f, 0x02, 0xc1, 0xaf, 0xbd, 0x03, 0x01, 0x13, 0x8a, 0x6b, 0x3a, 0x91,
+    0x11, 0x41, 0x4f, 0x67, 0xdc, 0xea, 0x97, 0xf2, 0xcf, 0xce, 0xf0, 0xb4, 0xe6,
+    0x73, 0x96, 0xac, 0x74, 0x22, 0xe7, 0xad, 0x35, 0x85, 0xe2, 0xf9, 0x37, 0xe8,
+    0x1c, 0x75, 0xdf, 0x6e, 0x47, 0xf1, 0x1a, 0x71, 0x1d, 0x29, 0xc5, 0x89, 0x6f,
+    0xb7, 0x62, 0x0e, 0xaa, 0x18, 0xbe, 0x1b, 0xfc, 0x56, 0x3e, 0x4b, 0xc6, 0xd2,
+    0x79, 0x20, 0x9a, 0xdb, 0xc0, 0xfe, 0x78, 0xcd, 0x5a, 0xf4, 0x1f, 0xdd, 0xa8,
+    0x33, 0x88, 0x07, 0xc7, 0x31, 0xb1, 0x12, 0x10, 0x59, 0x27, 0x80, 0xec, 0x5f,
+    0x60, 0x51, 0x7f, 0xa9, 0x19, 0xb5, 0x4a, 0x0d, 0x2d, 0xe5, 0x7a, 0x9f, 0x93,
+    0xc9, 0x9c, 0xef, 0xa0, 0xe0, 0x3b, 0x4d, 0xae, 0x2a, 0xf5, 0xb0, 0xc8, 0xeb,
+    0xbb, 0x3c, 0x83, 0x53, 0x99, 0x61, 0x17, 0x2b, 0x04, 0x7e, 0xba, 0x77, 0xd6,
+    0x26, 0xe1, 0x69, 0x14, 0x63, 0x55, 0x21, 0x0c, 0x7d,
+]);
+const RCON = new Uint8Array([
+    0x01, 0x02, 0x04, 0x08, 0x10, 0x20, 0x40, 0x80, 0x1b, 0x36,
+]);
+function gmul(a, b) {
+    let p = 0;
+    for (let i = 0; i < 8; i++) {
+        if (b & 1) {
+            p ^= a;
+        }
+        const hiBit = a & 0x80;
+        a = (a << 1) & 0xff;
+        if (hiBit) {
+            a ^= 0x1b;
+        }
+        b >>= 1;
+    }
+    return p;
+}
+function aesKeyExpansion(key) {
+    const Nk = 8;
+    const Nr = 14;
+    const expandedKey = new Uint8Array(16 * (Nr + 1));
+    expandedKey.set(key);
+    for (let i = Nk; i < 4 * (Nr + 1); i++) {
+        const temp = expandedKey.slice((i - 1) * 4, i * 4);
+        if (i % Nk === 0) {
+            const t = temp[0];
+            temp[0] = SBOX[temp[1]] ^ RCON[i / Nk - 1];
+            temp[1] = SBOX[temp[2]];
+            temp[2] = SBOX[temp[3]];
+            temp[3] = SBOX[t];
+        }
+        else if (Nk > 6 && i % Nk === 4) {
+            for (let j = 0; j < 4; j++) {
+                temp[j] = SBOX[temp[j]];
+            }
+        }
+        for (let j = 0; j < 4; j++) {
+            expandedKey[i * 4 + j] = expandedKey[(i - Nk) * 4 + j] ^ temp[j];
+        }
+    }
+    return expandedKey;
+}
+function aesEncryptBlock(block, expandedKey) {
+    const Nr = 14;
+    const state = new Uint8Array(16);
+    state.set(block);
+    for (let i = 0; i < 16; i++) {
+        state[i] ^= expandedKey[i];
+    }
+    for (let round = 1; round <= Nr; round++) {
+        for (let i = 0; i < 16; i++) {
+            state[i] = SBOX[state[i]];
+        }
+        const t1 = state[1];
+        state[1] = state[5];
+        state[5] = state[9];
+        state[9] = state[13];
+        state[13] = t1;
+        const t2 = state[2];
+        const t6 = state[6];
+        state[2] = state[10];
+        state[6] = state[14];
+        state[10] = t2;
+        state[14] = t6;
+        const t3 = state[15];
+        state[15] = state[11];
+        state[11] = state[7];
+        state[7] = state[3];
+        state[3] = t3;
+        if (round < Nr) {
+            for (let c = 0; c < 4; c++) {
+                const i = c * 4;
+                const s0 = state[i];
+                const s1 = state[i + 1];
+                const s2 = state[i + 2];
+                const s3 = state[i + 3];
+                state[i] = gmul(s0, 2) ^ gmul(s1, 3) ^ s2 ^ s3;
+                state[i + 1] = s0 ^ gmul(s1, 2) ^ gmul(s2, 3) ^ s3;
+                state[i + 2] = s0 ^ s1 ^ gmul(s2, 2) ^ gmul(s3, 3);
+                state[i + 3] = gmul(s0, 3) ^ s1 ^ s2 ^ gmul(s3, 2);
+            }
+        }
+        const roundKey = expandedKey.subarray(round * 16, (round + 1) * 16);
+        for (let i = 0; i < 16; i++) {
+            state[i] ^= roundKey[i];
+        }
+    }
+    return state;
+}
+function aesDecryptBlock(block, expandedKey) {
+    const Nr = 14;
+    const state = new Uint8Array(16);
+    state.set(block);
+    for (let i = 0; i < 16; i++) {
+        state[i] ^= expandedKey[Nr * 16 + i];
+    }
+    for (let round = Nr - 1; round >= 0; round--) {
+        const t1 = state[13];
+        state[13] = state[9];
+        state[9] = state[5];
+        state[5] = state[1];
+        state[1] = t1;
+        const t2 = state[10];
+        const t6 = state[14];
+        state[10] = state[2];
+        state[14] = state[6];
+        state[2] = t2;
+        state[6] = t6;
+        const t3 = state[3];
+        state[3] = state[7];
+        state[7] = state[11];
+        state[11] = state[15];
+        state[15] = t3;
+        for (let i = 0; i < 16; i++) {
+            state[i] = SBOX_INV[state[i]];
+        }
+        const roundKey = expandedKey.subarray(round * 16, (round + 1) * 16);
+        for (let i = 0; i < 16; i++) {
+            state[i] ^= roundKey[i];
+        }
+        if (round > 0) {
+            for (let c = 0; c < 4; c++) {
+                const i = c * 4;
+                const s0 = state[i];
+                const s1 = state[i + 1];
+                const s2 = state[i + 2];
+                const s3 = state[i + 3];
+                state[i] = gmul(s0, 14) ^ gmul(s1, 11) ^ gmul(s2, 13) ^ gmul(s3, 9);
+                state[i + 1] = gmul(s0, 9) ^ gmul(s1, 14) ^ gmul(s2, 11) ^ gmul(s3, 13);
+                state[i + 2] = gmul(s0, 13) ^ gmul(s1, 9) ^ gmul(s2, 14) ^ gmul(s3, 11);
+                state[i + 3] = gmul(s0, 11) ^ gmul(s1, 13) ^ gmul(s2, 9) ^ gmul(s3, 14);
+            }
+        }
+    }
+    return state;
+}
+function pkcs7Pad(data, blockSize) {
+    const padding = blockSize - (data.length % blockSize);
+    const padded = new Uint8Array(data.length + padding);
+    padded.set(data);
+    padded.fill(padding, data.length);
+    return padded;
+}
+function pkcs7Unpad(data) {
+    const padding = data[data.length - 1];
+    if (padding > 16 || padding === 0) {
+        throw new Error('Invalid padding');
+    }
+    for (let i = data.length - padding; i < data.length; i++) {
+        if (data[i] !== padding) {
+            throw new Error('Invalid padding');
+        }
+    }
+    return data.subarray(0, data.length - padding);
+}
+function aesCbcEncryptFallback(plaintext, key, iv) {
+    const expandedKey = aesKeyExpansion(key);
+    const padded = pkcs7Pad(plaintext, 16);
+    const ciphertext = new Uint8Array(padded.length);
+    let prevBlock = iv;
+    for (let i = 0; i < padded.length; i += 16) {
+        const block = padded.slice(i, i + 16);
+        for (let j = 0; j < 16; j++) {
+            block[j] ^= prevBlock[j];
+        }
+        const encrypted = aesEncryptBlock(block, expandedKey);
+        ciphertext.set(encrypted, i);
+        prevBlock = encrypted;
+    }
+    return ciphertext;
+}
+function aesCbcDecryptFallback(ciphertext, key, iv) {
+    const expandedKey = aesKeyExpansion(key);
+    const plaintext = new Uint8Array(ciphertext.length);
+    let prevBlock = iv;
+    for (let i = 0; i < ciphertext.length; i += 16) {
+        const block = ciphertext.slice(i, i + 16);
+        const decrypted = aesDecryptBlock(block, expandedKey);
+        for (let j = 0; j < 16; j++) {
+            decrypted[j] ^= prevBlock[j];
+        }
+        plaintext.set(decrypted, i);
+        prevBlock = block;
+    }
+    return pkcs7Unpad(plaintext);
+}
+function getRandomBytes(length) {
+    if (typeof crypto !== 'undefined' && crypto.getRandomValues) {
+        return crypto.getRandomValues(new Uint8Array(length));
+    }
+    const bytes = new Uint8Array(length);
+    for (let i = 0; i < length; i++) {
+        bytes[i] = Math.floor(Math.random() * 256);
+    }
+    return bytes;
+}
+const SHA256_K = new Uint32Array([
+    0x428a2f98, 0x71374491, 0xb5c0fbcf, 0xe9b5dba5, 0x3956c25b, 0x59f111f1,
+    0x923f82a4, 0xab1c5ed5, 0xd807aa98, 0x12835b01, 0x243185be, 0x550c7dc3,
+    0x72be5d74, 0x80deb1fe, 0x9bdc06a7, 0xc19bf174, 0xe49b69c1, 0xefbe4786,
+    0x0fc19dc6, 0x240ca1cc, 0x2de92c6f, 0x4a7484aa, 0x5cb0a9dc, 0x76f988da,
+    0x983e5152, 0xa831c66d, 0xb00327c8, 0xbf597fc7, 0xc6e00bf3, 0xd5a79147,
+    0x06ca6351, 0x14292967, 0x27b70a85, 0x2e1b2138, 0x4d2c6dfc, 0x53380d13,
+    0x650a7354, 0x766a0abb, 0x81c2c92e, 0x92722c85, 0xa2bfe8a1, 0xa81a664b,
+    0xc24b8b70, 0xc76c51a3, 0xd192e819, 0xd6990624, 0xf40e3585, 0x106aa070,
+    0x19a4c116, 0x1e376c08, 0x2748774c, 0x34b0bcb5, 0x391c0cb3, 0x4ed8aa4a,
+    0x5b9cca4f, 0x682e6ff3, 0x748f82ee, 0x78a5636f, 0x84c87814, 0x8cc70208,
+    0x90befffa, 0xa4506ceb, 0xbef9a3f7, 0xc67178f2,
+]);
+function sha256Fallback(data) {
+    function rotr(x, n) {
+        return (x >>> n) | (x << (32 - n));
+    }
+    function ch(x, y, z) {
+        return (x & y) ^ (~x & z);
+    }
+    function maj(x, y, z) {
+        return (x & y) ^ (x & z) ^ (y & z);
+    }
+    function sigma0(x) {
+        return rotr(x, 2) ^ rotr(x, 13) ^ rotr(x, 22);
+    }
+    function sigma1(x) {
+        return rotr(x, 6) ^ rotr(x, 11) ^ rotr(x, 25);
+    }
+    function gamma0(x) {
+        return rotr(x, 7) ^ rotr(x, 18) ^ (x >>> 3);
+    }
+    function gamma1(x) {
+        return rotr(x, 17) ^ rotr(x, 19) ^ (x >>> 10);
+    }
+    const originalLength = data.length;
+    const bitLength = originalLength * 8;
+    const paddingLength = (64 - ((originalLength + 9) % 64)) % 64;
+    const padded = new Uint8Array(originalLength + 1 + paddingLength + 8);
+    padded.set(data);
+    padded[originalLength] = 0x80;
+    const view = new DataView(padded.buffer);
+    view.setUint32(padded.length - 4, bitLength >>> 0, false);
+    view.setUint32(padded.length - 8, Math.floor(bitLength / 0x100000000), false);
+    let h0 = 0x6a09e667;
+    let h1 = 0xbb67ae85;
+    let h2 = 0x3c6ef372;
+    let h3 = 0xa54ff53a;
+    let h4 = 0x510e527f;
+    let h5 = 0x9b05688c;
+    let h6 = 0x1f83d9ab;
+    let h7 = 0x5be0cd19;
+    const W = new Uint32Array(64);
+    for (let i = 0; i < padded.length; i += 64) {
+        for (let t = 0; t < 16; t++) {
+            W[t] = view.getUint32(i + t * 4, false);
+        }
+        for (let t = 16; t < 64; t++) {
+            W[t] =
+                (gamma1(W[t - 2]) + W[t - 7] + gamma0(W[t - 15]) + W[t - 16]) >>> 0;
+        }
+        let a = h0;
+        let b = h1;
+        let c = h2;
+        let d = h3;
+        let e = h4;
+        let f = h5;
+        let g = h6;
+        let h = h7;
+        for (let t = 0; t < 64; t++) {
+            const T1 = (h + sigma1(e) + ch(e, f, g) + SHA256_K[t] + W[t]) >>> 0;
+            const T2 = (sigma0(a) + maj(a, b, c)) >>> 0;
+            h = g;
+            g = f;
+            f = e;
+            e = (d + T1) >>> 0;
+            d = c;
+            c = b;
+            b = a;
+            a = (T1 + T2) >>> 0;
+        }
+        h0 = (h0 + a) >>> 0;
+        h1 = (h1 + b) >>> 0;
+        h2 = (h2 + c) >>> 0;
+        h3 = (h3 + d) >>> 0;
+        h4 = (h4 + e) >>> 0;
+        h5 = (h5 + f) >>> 0;
+        h6 = (h6 + g) >>> 0;
+        h7 = (h7 + h) >>> 0;
+    }
+    const result = new Uint8Array(32);
+    const resultView = new DataView(result.buffer);
+    resultView.setUint32(0, h0, false);
+    resultView.setUint32(4, h1, false);
+    resultView.setUint32(8, h2, false);
+    resultView.setUint32(12, h3, false);
+    resultView.setUint32(16, h4, false);
+    resultView.setUint32(20, h5, false);
+    resultView.setUint32(24, h6, false);
+    resultView.setUint32(28, h7, false);
+    return result;
+}
+function md5(data) {
+    const S = [
+        7, 12, 17, 22, 7, 12, 17, 22, 7, 12, 17, 22, 7, 12, 17, 22, 5, 9, 14, 20, 5,
+        9, 14, 20, 5, 9, 14, 20, 5, 9, 14, 20, 4, 11, 16, 23, 4, 11, 16, 23, 4, 11,
+        16, 23, 4, 11, 16, 23, 6, 10, 15, 21, 6, 10, 15, 21, 6, 10, 15, 21, 6, 10,
+        15, 21,
+    ];
+    const K = [
+        0xd76aa478, 0xe8c7b756, 0x242070db, 0xc1bdceee, 0xf57c0faf, 0x4787c62a,
+        0xa8304613, 0xfd469501, 0x698098d8, 0x8b44f7af, 0xffff5bb1, 0x895cd7be,
+        0x6b901122, 0xfd987193, 0xa679438e, 0x49b40821, 0xf61e2562, 0xc040b340,
+        0x265e5a51, 0xe9b6c7aa, 0xd62f105d, 0x02441453, 0xd8a1e681, 0xe7d3fbc8,
+        0x21e1cde6, 0xc33707d6, 0xf4d50d87, 0x455a14ed, 0xa9e3e905, 0xfcefa3f8,
+        0x676f02d9, 0x8d2a4c8a, 0xfffa3942, 0x8771f681, 0x6d9d6122, 0xfde5380c,
+        0xa4beea44, 0x4bdecfa9, 0xf6bb4b60, 0xbebfbc70, 0x289b7ec6, 0xeaa127fa,
+        0xd4ef3085, 0x04881d05, 0xd9d4d039, 0xe6db99e5, 0x1fa27cf8, 0xc4ac5665,
+        0xf4292244, 0x432aff97, 0xab9423a7, 0xfc93a039, 0x655b59c3, 0x8f0ccc92,
+        0xffeff47d, 0x85845dd1, 0x6fa87e4f, 0xfe2ce6e0, 0xa3014314, 0x4e0811a1,
+        0xf7537e82, 0xbd3af235, 0x2ad7d2bb, 0xeb86d391,
+    ];
+    function leftRotate(x, c) {
+        return (x << c) | (x >>> (32 - c));
+    }
+    const originalLength = data.length;
+    const bitLength = originalLength * 8;
+    const paddingLength = (56 - ((originalLength + 1) % 64) + 64) % 64;
+    const padded = new Uint8Array(originalLength + 1 + paddingLength + 8);
+    padded.set(data);
+    padded[originalLength] = 0x80;
+    const view = new DataView(padded.buffer);
+    view.setUint32(padded.length - 8, bitLength >>> 0, true);
+    view.setUint32(padded.length - 4, Math.floor(bitLength / 0x100000000), true);
+    let a0 = 0x67452301;
+    let b0 = 0xefcdab89;
+    let c0 = 0x98badcfe;
+    let d0 = 0x10325476;
+    for (let i = 0; i < padded.length; i += 64) {
+        const M = new Uint32Array(16);
+        for (let j = 0; j < 16; j++) {
+            M[j] = view.getUint32(i + j * 4, true);
+        }
+        let A = a0;
+        let B = b0;
+        let C = c0;
+        let D = d0;
+        for (let j = 0; j < 64; j++) {
+            let F;
+            let g;
+            if (j < 16) {
+                F = (B & C) | (~B & D);
+                g = j;
+            }
+            else if (j < 32) {
+                F = (D & B) | (~D & C);
+                g = (5 * j + 1) % 16;
+            }
+            else if (j < 48) {
+                F = B ^ C ^ D;
+                g = (3 * j + 5) % 16;
+            }
+            else {
+                F = C ^ (B | ~D);
+                g = (7 * j) % 16;
+            }
+            F = (F + A + K[j] + M[g]) >>> 0;
+            A = D;
+            D = C;
+            C = B;
+            B = (B + leftRotate(F, S[j])) >>> 0;
+        }
+        a0 = (a0 + A) >>> 0;
+        b0 = (b0 + B) >>> 0;
+        c0 = (c0 + C) >>> 0;
+        d0 = (d0 + D) >>> 0;
+    }
+    const result = new Uint8Array(16);
+    const resultView = new DataView(result.buffer);
+    resultView.setUint32(0, a0, true);
+    resultView.setUint32(4, b0, true);
+    resultView.setUint32(8, c0, true);
+    resultView.setUint32(12, d0, true);
+    return result;
+}
+function evpBytesToKey(password, salt, keyLen, ivLen) {
+    const result = new Uint8Array(keyLen + ivLen);
+    let offset = 0;
+    let prevHash = new Uint8Array(0);
+    while (offset < keyLen + ivLen) {
+        const data = new Uint8Array(prevHash.length + password.length + salt.length);
+        data.set(prevHash);
+        data.set(password, prevHash.length);
+        data.set(salt, prevHash.length + password.length);
+        prevHash = md5(data);
+        result.set(prevHash.subarray(0, Math.min(16, keyLen + ivLen - offset)), offset);
+        offset += 16;
+    }
+    return {
+        key: result.slice(0, keyLen),
+        iv: result.slice(keyLen, keyLen + ivLen),
+    };
+}
+function stringToBytes(str) {
+    const encoded = new TextEncoder().encode(str);
+    return encoded.slice();
+}
+function bytesToString(bytes) {
+    return new TextDecoder().decode(bytes);
+}
+function base64Encode(data) {
+    let binary = '';
+    for (const byte of data) {
+        binary += String.fromCharCode(byte);
+    }
+    return btoa(binary);
+}
+function base64Decode(str) {
+    const binary = atob(str);
+    const bytes = new Uint8Array(binary.length);
+    for (let i = 0; i < binary.length; i++) {
+        bytes[i] = binary.charCodeAt(i);
+    }
+    return bytes;
+}
+export async function aesEncrypt(plaintext, password) {
+    const salt = getRandomBytes(8);
+    const { key, iv } = evpBytesToKey(stringToBytes(password), salt, 32, 16);
+    let encrypted;
+    if (isWebCryptoAvailable()) {
+        const cryptoKey = await crypto.subtle.importKey('raw', key, { name: 'AES-CBC' }, false, ['encrypt']);
+        const encryptedBuffer = await crypto.subtle.encrypt({ name: 'AES-CBC', iv }, cryptoKey, stringToBytes(plaintext));
+        encrypted = new Uint8Array(encryptedBuffer);
+    }
+    else {
+        encrypted = aesCbcEncryptFallback(stringToBytes(plaintext), key, iv);
+    }
+    const saltPrefix = stringToBytes(SALT_PREFIX);
+    const result = new Uint8Array(saltPrefix.length + salt.length + encrypted.byteLength);
+    result.set(saltPrefix);
+    result.set(salt, saltPrefix.length);
+    result.set(encrypted, saltPrefix.length + salt.length);
+    return base64Encode(result);
+}
+export async function aesDecrypt(ciphertext, password) {
+    const data = base64Decode(ciphertext);
+    const saltPrefix = stringToBytes(SALT_PREFIX);
+    const hasSalt = data.length > saltPrefix.length &&
+        bytesToString(data.subarray(0, saltPrefix.length)) === SALT_PREFIX;
+    if (!hasSalt) {
+        throw new Error('Invalid encrypted data format');
+    }
+    const salt = data.slice(saltPrefix.length, saltPrefix.length + 8);
+    const encrypted = data.slice(saltPrefix.length + 8);
+    const { key, iv } = evpBytesToKey(stringToBytes(password), salt, 32, 16);
+    let decrypted;
+    if (isWebCryptoAvailable()) {
+        const cryptoKey = await crypto.subtle.importKey('raw', key, { name: 'AES-CBC' }, false, ['decrypt']);
+        const decryptedBuffer = await crypto.subtle.decrypt({ name: 'AES-CBC', iv }, cryptoKey, encrypted);
+        decrypted = new Uint8Array(decryptedBuffer);
+    }
+    else {
+        decrypted = aesCbcDecryptFallback(encrypted, key, iv);
+    }
+    return bytesToString(decrypted);
+}
+export async function sha256(data) {
+    const encoded = stringToBytes(data);
+    if (isWebCryptoAvailable()) {
+        const hashBuffer = await crypto.subtle.digest('SHA-256', encoded);
+        return new Uint8Array(hashBuffer);
+    }
+    return sha256Fallback(encoded);
+}
+export function toBase64(data) {
+    return base64Encode(data);
+}
+export function toBase64Url(data) {
+    return base64Encode(data)
+        .replaceAll('+', '-')
+        .replaceAll('/', '_')
+        .replaceAll('=', '');
+}
+export async function sha256Base64(data) {
+    const hash = await sha256(data);
+    return toBase64(hash);
+}
+export async function sha256Base64Url(data) {
+    const hash = await sha256(data);
+    return toBase64Url(hash);
+}

package/esm/util/fileHandleStore.d.ts

@@ -0,0 +1,6 @@
+export declare function isFileSystemAccessSupported(): boolean;
+export declare function storeFileHandle(handle: FileSystemFileHandle): Promise<string>;
+export declare function getFileHandle(handleId: string): Promise<FileSystemFileHandle | undefined>;
+export declare function removeFileHandle(handleId: string): Promise<void>;
+export declare function verifyPermission(handle: FileSystemFileHandle, requestPermission?: boolean): Promise<boolean>;
+export declare function cleanupStaleHandles(maxAgeMs: number): Promise<void>;

package/esm/util/fileHandleStore.js

@@ -0,0 +1,68 @@
+import { openDB } from 'idb';
+const DB_NAME = 'jbrowse-file-handles';
+const DB_VERSION = 1;
+const STORE_NAME = 'handles';
+let dbPromise;
+function getDB() {
+    if (!dbPromise) {
+        dbPromise = openDB(DB_NAME, DB_VERSION, {
+            upgrade(db) {
+                if (!db.objectStoreNames.contains(STORE_NAME)) {
+                    db.createObjectStore(STORE_NAME);
+                }
+            },
+        });
+    }
+    return dbPromise;
+}
+export function isFileSystemAccessSupported() {
+    return typeof window !== 'undefined' && 'showOpenFilePicker' in window;
+}
+let counter = 0;
+export async function storeFileHandle(handle) {
+    const handleId = `fh${Date.now()}-${counter++}`;
+    const db = await getDB();
+    await db.put(STORE_NAME, {
+        handle,
+        name: handle.name,
+        createdAt: Date.now(),
+    }, handleId);
+    return handleId;
+}
+export async function getFileHandle(handleId) {
+    const db = await getDB();
+    const entry = await db.get(STORE_NAME, handleId);
+    return entry?.handle;
+}
+export async function removeFileHandle(handleId) {
+    const db = await getDB();
+    await db.delete(STORE_NAME, handleId);
+}
+export async function verifyPermission(handle, requestPermission = false) {
+    const options = { mode: 'read' };
+    const currentPermission = await handle.queryPermission(options);
+    if (currentPermission === 'granted') {
+        return true;
+    }
+    if (requestPermission) {
+        const newPermission = await handle.requestPermission(options);
+        if (newPermission === 'granted') {
+            return true;
+        }
+    }
+    return false;
+}
+export async function cleanupStaleHandles(maxAgeMs) {
+    const db = await getDB();
+    const now = Date.now();
+    const tx = db.transaction(STORE_NAME, 'readwrite');
+    const store = tx.objectStore(STORE_NAME);
+    let cursor = await store.openCursor();
+    while (cursor) {
+        if (now - cursor.value.createdAt > maxAgeMs) {
+            await cursor.delete();
+        }
+        cursor = await cursor.continue();
+    }
+    await tx.done;
+}

package/esm/util/idMaker.js

@@ -12,7 +12,15 @@ export default function idMaker(args, id = '', len = 5000) {
                     stack.push(val);
                 }
                 else {
-                    id += `${key}-${val}`;
+                    if (key === 'locationType' && val === 'FileHandleLocation') {
+                        id += `${key}-BlobLocation`;
+                    }
+                    else if (key === 'handleId') {
+                        id += `blobId-fh-blob-${val}`;
+                    }
+                    else {
+                        id += `${key}-${val}`;
+                    }
                 }
             }
         }

package/esm/util/index.d.ts

@@ -17,6 +17,7 @@ export * from './coarseStripHTML.ts';
 export * from './offscreenCanvasPonyfill.tsx';
 export * from './offscreenCanvasUtils.tsx';
 export * from './rpc.ts';
+export * from './crypto.ts';
 export declare function useDebounce<T>(value: T, delay: number): T;
 export declare function useWidthSetter(view: {
     setWidth: (arg: number) => void;
@@ -269,3 +270,5 @@ export * from './linkify.ts';
 export * from './locString.ts';
 export * from './stopToken.ts';
 export * from './tracks.ts';
+export * from './fileHandleStore.ts';
+export { IntervalTree } from './IntervalTree.ts';

package/esm/util/index.js

@@ -17,6 +17,7 @@ export * from "./coarseStripHTML.js";
 export * from "./offscreenCanvasPonyfill.js";
 export * from "./offscreenCanvasUtils.js";
 export * from "./rpc.js";
+export * from "./crypto.js";
 const containingDisplayCache = new WeakMap();
 const containingTrackCache = new WeakMap();
 const containingViewCache = new WeakMap();
@@ -871,3 +872,5 @@ export * from "./linkify.js";
 export * from "./locString.js";
 export * from "./stopToken.js";
 export * from "./tracks.js";
+export * from "./fileHandleStore.js";
+export { IntervalTree } from "./IntervalTree.js";

package/esm/util/io/index.js

@@ -2,7 +2,7 @@ import isNode from 'detect-node';
 import { BlobFile, LocalFile } from 'generic-filehandle2';
 import { RemoteFileWithRangeCache } from "./RemoteFileWithRangeCache.js";
 import { isElectron } from "../index.js";
-import { getBlob } from "../tracks.js";
+import { getBlob, getFileFromCache } from "../tracks.js";
 import { AuthNeededError, isRootModelWithInternetAccounts, isUriLocation, } from "../types/index.js";
 function isLocalPathLocation(location) {
     return 'localPath' in location;
@@ -10,6 +10,9 @@ function isLocalPathLocation(location) {
 function isBlobLocation(location) {
     return 'blobId' in location;
 }
+function isFileHandleLocationLocal(location) {
+    return 'handleId' in location;
+}
 export function resolveUriLocation(location) {
     return location.baseUri
         ? { ...location, uri: new URL(location.uri, location.baseUri).href }
@@ -34,6 +37,13 @@ export function openLocation(location, pluginManager) {
         }
         return new BlobFile(blob);
     }
+    if (isFileHandleLocationLocal(location)) {
+        const file = getFileFromCache(location.handleId);
+        if (!file) {
+            throw new Error(`file ("${location.name}") requires permission. Please reopen the file from track settings`);
+        }
+        return new BlobFile(file);
+    }
     if (isUriLocation(location)) {
         if (!location.uri) {
             throw new Error('No URI provided');