@jbrowse/core 3.6.3 → 3.6.5
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/assemblyManager/assemblyManager.d.ts +1 -0
- package/assemblyManager/assemblyManager.js +20 -2
- package/package.json +2 -2
- package/tsconfig.build.tsbuildinfo +1 -1
- package/ui/CascadingMenu.js +3 -2
- package/ui/hooks.js +6 -6
- package/util/index.js +8 -2
- package/util/parseLineByLine.d.ts +3 -0
- package/util/parseLineByLine.js +25 -0
- package/util/types/index.d.ts +2 -2
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@@ -207,6 +207,7 @@ declare function assemblyManagerFactory(conf: IAnyType, pm: PluginManager): impo
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afterCreate(): void;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
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209
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} & {
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210
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+
getCanonicalAssemblyName(asmName: string): string | undefined;
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get(asmName: string): ({
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configuration: any;
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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@@ -25,8 +25,24 @@ function assemblyManagerFactory(conf, pm) {
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25
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},
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}))
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.views(self => ({
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28
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+
getCanonicalAssemblyName(asmName) {
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29
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var _a;
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return (_a = self.assemblyNameMap[asmName]) === null || _a === void 0 ? void 0 : _a.name;
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},
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get(asmName) {
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-
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+
if (asmName) {
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const assembly = self.assemblyNameMap[asmName];
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35
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if (assembly) {
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return assembly;
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37
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}
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38
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else if (!this.assemblyNamesList.includes(asmName)) {
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39
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pm.evaluateExtensionPoint('Core-handleUnrecognizedAssembly', undefined, {
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40
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assemblyName: asmName,
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41
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session: (0, mobx_state_tree_1.getParent)(self).session,
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});
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}
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}
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45
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return undefined;
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30
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},
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get assemblyNamesList() {
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return this.assemblyList.map(asm => asm.name);
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@@ -51,7 +67,9 @@ function assemblyManagerFactory(conf, pm) {
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let assembly = self.get(assemblyName);
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if (!assembly) {
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try {
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54
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-
await (0, util_1.when)(() => Boolean(self.get(assemblyName)), {
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70
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+
await (0, util_1.when)(() => Boolean(self.get(assemblyName)), {
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71
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timeout: 10000,
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});
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assembly = self.get(assemblyName);
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}
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catch (e) {
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package/package.json
CHANGED
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@@ -1,6 +1,6 @@
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1
1
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{
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"name": "@jbrowse/core",
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3
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-
"version": "3.6.
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3
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+
"version": "3.6.5",
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"description": "JBrowse 2 core libraries used by plugins",
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"keywords": [
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"jbrowse",
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@@ -69,5 +69,5 @@
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"access": "public",
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"directory": "dist"
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},
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-
"gitHead": "
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+
"gitHead": "354d0a87b757b4d84f824b47507662f6f3a1693f"
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}
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