@jbrowse/core 3.5.1 → 3.6.0

package/Plugin.d.ts

@@ -8,6 +8,6 @@ export default abstract class Plugin {
     configure(_pluginManager: PluginManager): void;
     configurationSchema?: AnyConfigurationSchemaType;
     configurationSchemaUnnamespaced?: AnyConfigurationSchemaType;
-    rootConfigurationSchema?: (arg: PluginManager) => AnyConfigurationSchemaType;
+    rootConfigurationSchema?: (arg: PluginManager) => Record<string, AnyConfigurationSchemaType>;
 }
 export type PluginConstructor = new (...args: unknown[]) => Plugin;

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/core",
-  "version": "3.5.1",
+  "version": "3.6.0",
   "description": "JBrowse 2 core libraries used by plugins",
   "keywords": [
     "jbrowse",
@@ -69,5 +69,5 @@
     "access": "public",
     "directory": "dist"
   },
-  "gitHead": "cb8859da9d838ad2594964777c5c54f385d98f5e"
+  "gitHead": "133a68815ab348d156c18d83cffc997356c3cfbb"
 }

package/rpc/methods/CoreGetFeatures.d.ts

@@ -11,6 +11,7 @@ export default class CoreGetFeatures extends RpcMethodType {
         sessionId: string;
         regions: Region[];
         adapterConfig: Record<string, unknown>;
+        statusCallback: (arg: string) => void;
         stopToken?: string;
         opts?: any;
     }, rpcDriver: string): Promise<SimpleFeatureSerialized[]>;

package/rpc/methods/CoreGetFeatures.js

@@ -5,7 +5,6 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 Object.defineProperty(exports, "__esModule", { value: true });
 const rxjs_1 = require("rxjs");
 const operators_1 = require("rxjs/operators");
-const BaseAdapter_1 = require("../../data_adapters/BaseAdapter");
 const dataAdapterCache_1 = require("../../data_adapters/dataAdapterCache");
 const RpcMethodType_1 = __importDefault(require("../../pluggableElementTypes/RpcMethodType"));
 const util_1 = require("../../util");
@@ -26,18 +25,15 @@ class CoreGetFeatures extends RpcMethodType_1.default {
         return super.serializeArguments(renamedArgs, rpcDriver);
     }
     async execute(args, rpcDriver) {
-        const pm = this.pluginManager;
-        const deserializedArgs = await this.deserializeArguments(args, rpcDriver);
-        const { stopToken, sessionId, adapterConfig, regions, opts } = deserializedArgs;
-        const { dataAdapter } = await (0, dataAdapterCache_1.getAdapter)(pm, sessionId, adapterConfig);
-        if (!(0, BaseAdapter_1.isFeatureAdapter)(dataAdapter)) {
-            throw new Error('Adapter does not support retrieving features');
-        }
-        const ret = dataAdapter.getFeaturesInMultipleRegions(regions, {
+        const { stopToken, statusCallback, sessionId, adapterConfig, regions, opts, } = await this.deserializeArguments(args, rpcDriver);
+        const dataAdapter = (await (0, dataAdapterCache_1.getAdapter)(this.pluginManager, sessionId, adapterConfig)).dataAdapter;
+        const r = await (0, rxjs_1.firstValueFrom)(dataAdapter
+            .getFeaturesInMultipleRegions(regions, {
             ...opts,
+            statusCallback,
             stopToken,
-        });
-        const r = await (0, rxjs_1.firstValueFrom)(ret.pipe((0, operators_1.toArray)()));
+        })
+            .pipe((0, operators_1.toArray)()));
         return r.map(f => f.toJSON());
     }
 }