@jbrowse/core 2.7.0 → 2.7.2

package/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.js

@@ -34,8 +34,8 @@ const material_1 = require("@mui/material");
 const util_1 = require("../../util");
 const ResizeBar_1 = __importDefault(require("../../ui/ResizeBar"));
 const FieldName_1 = __importDefault(require("./FieldName"));
-const UriLink_1 = __importDefault(require("./UriLink"));
 const useResizeBar_1 = require("../../ui/useResizeBar");
+const ui_1 = require("../../ui");
 const useStyles = (0, mui_1.makeStyles)()(theme => ({
     margin: {
         margin: theme.spacing(1),
@@ -88,12 +88,17 @@ function DataGridDetails({ value, prefix, name, }) {
                     // @ts-expect-error the rows gets confused by the renderCell of the
                     // columns below
                     rows: rows, rowCount: 25, rowHeight: 25, columnHeaderHeight: 35, hideFooter: rows.length < 25, slots: { toolbar: checked ? x_data_grid_1.GridToolbar : null }, slotProps: {
-                        toolbar: { printOptions: { disableToolbarButton: true } },
+                        toolbar: {
+                            printOptions: {
+                                disableToolbarButton: true,
+                            },
+                        },
                     }, columns: colNames.map((val, index) => ({
                         field: val,
                         renderCell: params => {
                             const value = params.value;
-                            return (react_1.default.createElement("div", { className: classes.cell }, (0, util_1.isUriLocation)(value) ? (react_1.default.createElement(UriLink_1.default, { value: value })) : (react_1.default.createElement(react_1.default.Fragment, null, (0, util_1.getStr)(value)))));
+                            return (react_1.default.createElement("div", { className: classes.cell },
+                                react_1.default.createElement(ui_1.SanitizedHTML, { html: (0, util_1.getStr)(value) })));
                         },
                         width: widths[index],
                     })) }))));

package/PluginLoader.d.ts

@@ -40,6 +40,7 @@ export interface PluginRecord {
 export interface LoadedPlugin {
     default: PluginConstructor;
 }
+export declare function pluginDescriptionString(pluginDefinition: PluginDefinition): string;
 export default class PluginLoader {
     definitions: PluginDefinition[];
     fetchESM?: (url: string) => Promise<LoadedPlugin>;

package/PluginLoader.js

@@ -3,7 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.isCJSPluginDefinition = exports.isESMPluginDefinition = exports.isUMDPluginDefinition = void 0;
+exports.pluginDescriptionString = exports.isCJSPluginDefinition = exports.isESMPluginDefinition = exports.isUMDPluginDefinition = void 0;
 const load_script_1 = __importDefault(require("load-script"));
 // locals
 const Plugin_1 = __importDefault(require("./Plugin"));
@@ -63,6 +63,7 @@ function pluginDescriptionString(pluginDefinition) {
     }
     return 'unknown plugin';
 }
+exports.pluginDescriptionString = pluginDescriptionString;
 function isInWebWorker() {
     return Boolean('WorkerGlobalScope' in globalThis);
 }

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/core",
-  "version": "2.7.0",
+  "version": "2.7.2",
   "description": "JBrowse 2 core libraries used by plugins",
   "keywords": [
     "jbrowse",
@@ -73,5 +73,5 @@
     "access": "public",
     "directory": "dist"
   },
-  "gitHead": "dbe7fb1af01fc89f833d2744635eb44a17365b41"
+  "gitHead": "9052b295f2d322e729254457ed9fe2231fb22cce"
 }

package/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts

@@ -30,6 +30,11 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
         };
     }, import("../../configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>;
 }, {
+    /**
+     * #action
+     */
+    connect(_arg: AnyConfigurationModel): void;
+} & {
     afterAttach(): void;
     /**
      * #action

package/pluggableElementTypes/models/BaseConnectionModelFactory.js

@@ -25,10 +25,15 @@ function stateModelFactory(pluginManager) {
          */
         configuration: (0, configuration_1.ConfigurationReference)(baseConnectionConfig_1.default),
     })
+        .actions(() => ({
+        /**
+         * #action
+         */
+        connect(_arg) { },
+    }))
         .actions(self => ({
         afterAttach() {
             if (self.tracks.length === 0) {
-                // @ts-expect-error
                 self.connect(self.configuration);
             }
         },

package/pluggableElementTypes/models/baseTrackConfig.js

@@ -127,19 +127,17 @@ function createBaseTrackConfig(pluginManager) {
     }, {
         preProcessSnapshot: s2 => {
             const snap = pluginManager.evaluateExtensionPoint('Core-preProcessTrackConfig', JSON.parse(JSON.stringify(s2)));
-            const displayTypes = new Set();
             const { displays = [] } = snap;
             if (snap.trackId !== 'placeholderId') {
                 // Gets the displays on the track snapshot and the possible displays
                 // from the track type and adds any missing possible displays to the
                 // snapshot
-                displays.forEach(d => d && displayTypes.add(d.type));
-                const trackType = pluginManager.getTrackType(snap.type);
-                trackType.displayTypes.forEach(displayType => {
-                    if (!displayTypes.has(displayType.name)) {
+                const configDisplayTypes = new Set(displays.filter(d => !!d).map(d => d.type));
+                pluginManager.getTrackType(snap.type).displayTypes.forEach(d => {
+                    if (!configDisplayTypes.has(d.name)) {
                         displays.push({
-                            displayId: `${snap.trackId}-${displayType.name}`,
-                            type: displayType.name,
+                            displayId: `${snap.trackId}-${d.name}`,
+                            type: d.name,
                         });
                     }
                 });

package/pluggableElementTypes/renderers/RendererType.js

@@ -9,7 +9,7 @@ const PluggableElementBase_1 = __importDefault(require("../PluggableElementBase"
 class RendererType extends PluggableElementBase_1.default {
     constructor(stuff) {
         super(stuff);
-        this.supportsSVG = false;
+        this.supportsSVG = true;
         this.ReactComponent = stuff.ReactComponent;
         this.configSchema = stuff.configSchema;
         this.pluginManager = stuff.pluginManager;

package/rpc/BaseRpcDriver.js

@@ -130,7 +130,8 @@ class BaseRpcDriver {
             throw new TypeError('sessionId is required');
         }
         let done = false;
-        const worker = await this.getWorker(sessionId);
+        const unextendedWorker = await this.getWorker(sessionId);
+        const worker = pluginManager.evaluateExtensionPoint('Core-extendWorker', unextendedWorker);
         const rpcMethod = pluginManager.getRpcMethodType(functionName);
         const serializedArgs = await rpcMethod.serializeArguments(args, this.name);
         const filteredAndSerializedArgs = this.filterArgs(serializedArgs, sessionId);