@jbrowse/core 2.6.1 → 2.6.3

package/ui/ColorPicker.js

@@ -75,6 +75,7 @@ function ColorPicker({ onChange, color, }) {
     const palettes = Object.keys(paletteColors);
     const [text, setText] = (0, react_1.useState)(color);
     const rgb = (0, color_1.default)(color).rgb().toString();
+    const rgbDebounced = (0, util_1.useDebounce)(rgb, 1000);
     const handleChange = (val) => {
         setText(val);
         try {
@@ -84,7 +85,7 @@ function ColorPicker({ onChange, color, }) {
     };
     return (react_1.default.createElement("div", { style: { display: 'flex', padding: 10 } },
         react_1.default.createElement("div", { style: { width: 200, margin: 5 } },
-            react_1.default.createElement(react_colorful_1.RgbaStringColorPicker, { color: rgb, onChange: handleChange })),
+            react_1.default.createElement(react_colorful_1.RgbaStringColorPicker, { color: rgbDebounced, onChange: handleChange })),
         react_1.default.createElement("div", { style: { width: 200, margin: 5 } },
             react_1.default.createElement(material_1.Select, { value: val, onChange: event => {
                     const pal = event.target.value;

package/util/index.d.ts

@@ -202,11 +202,12 @@ export declare function renameRegionsIfNeeded<ARGTYPE extends {
 }>;
 export declare function minmax(a: number, b: number): number[];
 export declare function shorten(name: string, max?: number, short?: number): string;
-export declare function stringify({ refName, coord, oob, }: {
+export declare function stringify({ refName, coord, assemblyName, oob, }: {
+    assemblyName?: string;
     coord: number;
     refName?: string;
     oob?: boolean;
-}): string;
+}, useAssemblyName?: boolean): string;
 export declare const isElectron: boolean;
 export declare function revcom(seqString: string): string;
 export declare function reverse(seqString: string): string;

package/util/index.js

@@ -664,10 +664,13 @@ function shorten(name, max = 70, short = 30) {
         : name;
 }
 exports.shorten = shorten;
-function stringify({ refName, coord, oob, }) {
-    return refName
-        ? `${shorten(refName)}:${toLocale(coord)}${oob ? ' (out of bounds)' : ''}`
-        : '';
+function stringify({ refName, coord, assemblyName, oob, }, useAssemblyName) {
+    return [
+        assemblyName && useAssemblyName ? `{${assemblyName}}` : '',
+        refName
+            ? `${shorten(refName)}:${toLocale(coord)}${oob ? ' (out of bounds)' : ''}`
+            : '',
+    ].join('');
 }
 exports.stringify = stringify;
 // this is recommended in a later comment in

package/util/io/RemoteFileWithRangeCache.js

@@ -15,7 +15,7 @@ function binaryRangeFetch(url, start, end, options = {}) {
 const globalRangeCache = new http_range_fetcher_1.HttpRangeFetcher({
     fetch: binaryRangeFetch,
     size: 500 * 1024 ** 2,
-    chunkSize: 128 * 124,
+    chunkSize: 128 * 1024,
     maxFetchSize: 100 * 1024 ** 2,
     minimumTTL: 24 * 60 * 60 * 1000, // 1 day
 });

package/util/types/index.d.ts

@@ -211,6 +211,8 @@ export interface LocalPathLocation extends SnapshotIn<typeof MULocalPathLocation
 export interface UriLocation extends SnapshotIn<typeof MUUriLocation> {
 }
 export declare function isUriLocation(location: unknown): location is UriLocation;
+export declare function isLocalPathLocation(location: unknown): location is LocalPathLocation;
+export declare function isBlobLocation(location: unknown): location is BlobLocation;
 export declare class AuthNeededError extends Error {
     message: string;
     url: string;

package/util/types/index.js

@@ -14,7 +14,7 @@ var __exportStar = (this && this.__exportStar) || function(m, exports) {
     for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.isRetryException = exports.isAuthNeededException = exports.RetryError = exports.AuthNeededError = exports.isUriLocation = exports.isAbstractMenuManager = exports.isRootModelWithInternetAccounts = exports.isAppRootModel = exports.isTrackViewModel = exports.isDisplayModel = exports.isTrackModel = exports.isViewModel = exports.isSelectionContainer = exports.isSessionWithSessionPlugins = exports.isSessionModelWithConnectionEditing = exports.isSessionModelWithConnections = exports.isSessionModelWithWidgets = exports.isSessionWithAddTracks = exports.isSessionModelWithConfigEditing = exports.isSessionModel = exports.isViewContainer = void 0;
+exports.isRetryException = exports.isAuthNeededException = exports.RetryError = exports.AuthNeededError = exports.isBlobLocation = exports.isLocalPathLocation = exports.isUriLocation = exports.isAbstractMenuManager = exports.isRootModelWithInternetAccounts = exports.isAppRootModel = exports.isTrackViewModel = exports.isDisplayModel = exports.isTrackModel = exports.isViewModel = exports.isSelectionContainer = exports.isSessionWithSessionPlugins = exports.isSessionModelWithConnectionEditing = exports.isSessionModelWithConnections = exports.isSessionModelWithWidgets = exports.isSessionWithAddTracks = exports.isSessionModelWithConfigEditing = exports.isSessionModel = exports.isViewContainer = void 0;
 const mobx_state_tree_1 = require("mobx-state-tree");
 __exportStar(require("./util"), exports);
 function isViewContainer(thing) {
@@ -122,6 +122,20 @@ function isUriLocation(location) {
         !!location.uri);
 }
 exports.isUriLocation = isUriLocation;
+function isLocalPathLocation(location) {
+    return (typeof location === 'object' &&
+        location !== null &&
+        'localPath' in location &&
+        !!location.localPath);
+}
+exports.isLocalPathLocation = isLocalPathLocation;
+function isBlobLocation(location) {
+    return (typeof location === 'object' &&
+        location !== null &&
+        'blobId' in location &&
+        !!location.blobId);
+}
+exports.isBlobLocation = isBlobLocation;
 class AuthNeededError extends Error {
     constructor(message, url) {
         super(message);