@jbrowse/core 2.2.1 → 2.2.2

package/BaseFeatureWidget/SequenceFeatureDetails.js

@@ -109,6 +109,7 @@ function SequenceFeatureDetails({ model, feature }) {
             const [feat] = feats;
             return (feat === null || feat === void 0 ? void 0 : feat.get('seq')) || '';
         }
+        // eslint-disable-next-line @typescript-eslint/no-floating-promises
         ;
         (async () => {
             try {

package/BaseFeatureWidget/SequenceFeatureSettingsDialog.js

@@ -22,26 +22,16 @@ var __importStar = (this && this.__importStar) || function (mod) {
     __setModuleDefault(result, mod);
     return result;
 };
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
 Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importStar(require("react"));
 const material_1 = require("@mui/material");
+const ui_1 = require("@jbrowse/core/ui");
 const mui_1 = require("tss-react/mui");
-// icons
-const Close_1 = __importDefault(require("@mui/icons-material/Close"));
 const useStyles = (0, mui_1.makeStyles)()(theme => ({
     formElt: {
         margin: theme.spacing(3),
         width: 400,
     },
-    closeButton: {
-        position: 'absolute',
-        right: theme.spacing(1),
-        top: theme.spacing(1),
-        color: theme.palette.grey[500],
-    },
     dialogContent: {
         width: '80em',
     },
@@ -52,12 +42,7 @@ function SequenceFeatureSettingsDialog({ handleClose, intronBp: intronBpArg, upD
     const [upDownBp, setUpDownBp] = (0, react_1.useState)(`${upDownBpArg}`);
     const intronBpValid = !Number.isNaN(+intronBp);
     const upDownBpValid = !Number.isNaN(+upDownBp);
-    return (react_1.default.createElement(material_1.Dialog, { maxWidth: "xl", open: true, onClose: () => handleClose() },
-        react_1.default.createElement(material_1.DialogTitle, null,
-            "Feature sequence settings",
-            handleClose ? (react_1.default.createElement(material_1.IconButton, { className: classes.closeButton, onClick: () => handleClose() },
-                react_1.default.createElement(Close_1.default, null))) : null),
-        react_1.default.createElement(material_1.Divider, null),
+    return (react_1.default.createElement(ui_1.Dialog, { maxWidth: "xl", open: true, onClose: () => handleClose(), title: 'Feature sequence settings' },
         react_1.default.createElement(material_1.DialogContent, { className: classes.dialogContent },
             react_1.default.createElement(material_1.TextField, { label: "Number of intronic bases around splice site to display", className: classes.formElt, value: intronBp, helperText: !intronBpValid ? 'Not a number' : '', error: !intronBpValid, onChange: event => setIntronBp(event.target.value) }),
             react_1.default.createElement(material_1.TextField, { label: "Number of bases up/down stream of feature to display", className: classes.formElt, value: upDownBp, helperText: !upDownBpValid ? 'Not a number' : '', error: !upDownBpValid, onChange: event => setUpDownBp(event.target.value) })),

package/BaseFeatureWidget/SequenceHelpDialog.js

@@ -5,28 +5,12 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importDefault(require("react"));
 const material_1 = require("@mui/material");
-const mui_1 = require("tss-react/mui");
+const ui_1 = require("@jbrowse/core/ui");
 // icons
-const Close_1 = __importDefault(require("@mui/icons-material/Close"));
 const Settings_1 = __importDefault(require("@mui/icons-material/Settings"));
-const useStyles = (0, mui_1.makeStyles)()(theme => ({
-    closeButton: {
-        position: 'absolute',
-        right: theme.spacing(1),
-        top: theme.spacing(1),
-        color: theme.palette.grey[500],
-    },
-    dialogContent: {},
-}));
 function HelpDialog({ handleClose, }) {
-    const { classes } = useStyles();
-    return (react_1.default.createElement(material_1.Dialog, { maxWidth: "xl", open: true, onClose: () => handleClose() },
-        react_1.default.createElement(material_1.DialogTitle, null,
-            "Feature sequence panel",
-            handleClose ? (react_1.default.createElement(material_1.IconButton, { className: classes.closeButton, onClick: () => handleClose() },
-                react_1.default.createElement(Close_1.default, null))) : null),
-        react_1.default.createElement(material_1.Divider, null),
-        react_1.default.createElement(material_1.DialogContent, { className: classes.dialogContent },
+    return (react_1.default.createElement(ui_1.Dialog, { maxWidth: "xl", open: true, onClose: () => handleClose(), title: "Feature sequence panel help" },
+        react_1.default.createElement(material_1.DialogContent, null,
             react_1.default.createElement(material_1.Typography, { paragraph: true }, "The \"Feature sequence\" panel shows the underlying genomic sequence for a given feature, fetched from the reference genome."),
             react_1.default.createElement(material_1.Typography, null, "For gene features, this panel does special calculations to e.g. stitch together the coding sequence, the options are:"),
             react_1.default.createElement("ul", null,

package/data_adapters/BaseAdapter.d.ts

@@ -37,7 +37,7 @@ export declare abstract class BaseAdapter {
     getConf(arg: string | string[]): any;
     /**
      * Called to provide a hint that data tied to a certain region will not be
-     * needed for the forseeable future and can be purged from caches, etc
+     * needed for the foreseeable future and can be purged from caches, etc
      * @param region - Region
      */
     abstract freeResources(region: Region): void;

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/core",
-  "version": "2.2.1",
+  "version": "2.2.2",
   "description": "JBrowse 2 core libraries used by plugins",
   "keywords": [
     "jbrowse",
@@ -73,5 +73,5 @@
     "access": "public",
     "directory": "dist"
   },
-  "gitHead": "896d175c5d9345049faea8e1155f243c912aac42"
+  "gitHead": "abbc00e8feedbc58de84a7a3e735ec0224909b29"
 }

package/pluggableElementTypes/models/baseInternetAccountConfig.d.ts

@@ -1,4 +1 @@
-import { Instance } from 'mobx-state-tree';
 export declare const BaseInternetAccountConfig: import("../../configuration").AnyConfigurationSchemaType;
-export type BaseInternetAccountConfigModel = typeof BaseInternetAccountConfig;
-export type BaseInternetAccountConfig = Instance<BaseInternetAccountConfigModel>;

package/pluggableElementTypes/renderers/ServerSideRendererType.d.ts

@@ -74,7 +74,7 @@ export default class ServerSideRenderer extends RendererType {
      * Render method called on the client. Serializes args, then calls
      * "CoreRender" with the RPC manager.
      *
-     * @param rpcManager - RPC mananger
+     * @param rpcManager - RPC manager
      * @param args - render args
      */
     renderInClient(rpcManager: RpcManager, args: RenderArgs): Promise<ResultsSerialized>;

package/pluggableElementTypes/renderers/ServerSideRendererType.js

@@ -117,7 +117,7 @@ class ServerSideRenderer extends RendererType_1.default {
      * Render method called on the client. Serializes args, then calls
      * "CoreRender" with the RPC manager.
      *
-     * @param rpcManager - RPC mananger
+     * @param rpcManager - RPC manager
      * @param args - render args
      */
     async renderInClient(rpcManager, args) {

package/rpc/BaseRpcDriver.js

@@ -110,7 +110,7 @@ class BaseRpcDriver {
     }
     async remoteAbort(sessionId, functionName, signalId) {
         const worker = await this.getWorker(sessionId);
-        worker.call(functionName, { signalId }, { timeout: 1000000, rpcDriverClassName: this.name });
+        await worker.call(functionName, { signalId }, { timeout: 1000000, rpcDriverClassName: this.name });
     }
     createWorkerPool() {
         const hardwareConcurrency = detectHardwareConcurrency();