@jbrowse/core 2.18.0 → 3.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (165) hide show
  1. package/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.d.ts +1 -2
  2. package/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +6 -11
  3. package/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts +1 -2
  4. package/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +16 -17
  5. package/BaseFeatureWidget/BaseFeatureDetail/BaseCard.d.ts +1 -2
  6. package/BaseFeatureWidget/BaseFeatureDetail/BaseCard.js +2 -5
  7. package/BaseFeatureWidget/BaseFeatureDetail/BasicValue.d.ts +1 -2
  8. package/BaseFeatureWidget/BaseFeatureDetail/BasicValue.js +4 -6
  9. package/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.d.ts +1 -2
  10. package/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.js +5 -7
  11. package/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.d.ts +1 -2
  12. package/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.js +19 -46
  13. package/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.d.ts +1 -2
  14. package/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js +11 -27
  15. package/BaseFeatureWidget/BaseFeatureDetail/FieldName.d.ts +1 -2
  16. package/BaseFeatureWidget/BaseFeatureDetail/FieldName.js +2 -6
  17. package/BaseFeatureWidget/BaseFeatureDetail/Position.d.ts +1 -2
  18. package/BaseFeatureWidget/BaseFeatureDetail/Position.js +2 -5
  19. package/BaseFeatureWidget/BaseFeatureDetail/SimpleField.d.ts +1 -2
  20. package/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +2 -4
  21. package/BaseFeatureWidget/BaseFeatureDetail/UriField.d.ts +1 -2
  22. package/BaseFeatureWidget/BaseFeatureDetail/UriField.js +2 -4
  23. package/BaseFeatureWidget/BaseFeatureDetail/index.d.ts +3 -4
  24. package/BaseFeatureWidget/BaseFeatureDetail/index.js +5 -7
  25. package/BaseFeatureWidget/BaseFeatureDetail/util.js +4 -8
  26. package/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.d.ts +10 -0
  27. package/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.js +48 -0
  28. package/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.d.ts +1 -2
  29. package/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.js +33 -34
  30. package/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.d.ts +1 -2
  31. package/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.js +29 -22
  32. package/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.d.ts +8 -0
  33. package/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.js +28 -0
  34. package/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.d.ts +2 -10
  35. package/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.js +10 -75
  36. package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.d.ts +1 -2
  37. package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.js +5 -23
  38. package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.d.ts +1 -2
  39. package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.js +8 -42
  40. package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.d.ts +1 -2
  41. package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.js +98 -90
  42. package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.d.ts +1 -2
  43. package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.js +49 -53
  44. package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.d.ts +1 -2
  45. package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.js +18 -53
  46. package/BaseFeatureWidget/SequenceFeatureDetails/model.js +3 -10
  47. package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.d.ts +1 -2
  48. package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.js +6 -9
  49. package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.d.ts +1 -2
  50. package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.js +2 -2
  51. package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.d.ts +1 -2
  52. package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.js +5 -8
  53. package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.d.ts +1 -2
  54. package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.js +2 -2
  55. package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.d.ts +1 -2
  56. package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.js +3 -8
  57. package/BaseFeatureWidget/SequenceFeatureDetails/types.d.ts +8 -0
  58. package/BaseFeatureWidget/SequenceFeatureDetails/types.js +2 -0
  59. package/CorePlugin.js +17 -7
  60. package/PluginManager.d.ts +2 -1
  61. package/PluginManager.js +4 -2
  62. package/ReExports/list.js +3 -0
  63. package/ReExports/modules.d.ts +4 -2
  64. package/ReExports/modules.js +29 -19
  65. package/TextSearch/BaseResults.d.ts +1 -1
  66. package/assemblyManager/assembly.js +4 -4
  67. package/configuration/configurationSlot.d.ts +1 -1
  68. package/data_adapters/CytobandAdapter/CytobandAdapter.js +1 -4
  69. package/data_adapters/CytobandAdapter/index.js +20 -7
  70. package/data_adapters/dataAdapterCache.d.ts +0 -1
  71. package/data_adapters/dataAdapterCache.js +2 -9
  72. package/data_adapters/util.d.ts +1 -0
  73. package/data_adapters/util.js +10 -0
  74. package/package.json +7 -9
  75. package/pluggableElementTypes/models/BaseTrackModel.js +9 -5
  76. package/pluggableElementTypes/renderers/CircularChordRendererType.d.ts +1 -2
  77. package/pluggableElementTypes/renderers/CircularChordRendererType.js +2 -2
  78. package/pluggableElementTypes/renderers/RendererType.d.ts +2 -2
  79. package/pluggableElementTypes/renderers/RendererType.js +2 -2
  80. package/pluggableElementTypes/renderers/RpcRenderedSvgGroup.d.ts +1 -2
  81. package/pluggableElementTypes/renderers/RpcRenderedSvgGroup.js +9 -65
  82. package/pluggableElementTypes/renderers/ServerSideRenderedContent.d.ts +1 -2
  83. package/pluggableElementTypes/renderers/ServerSideRenderedContent.js +9 -65
  84. package/pluggableElementTypes/renderers/ServerSideRendererType.js +3 -3
  85. package/stories/examples/WithSequencePanel.d.ts +5 -6
  86. package/stories/examples/WithSequencePanel.js +6 -6
  87. package/tsconfig.build.tsbuildinfo +1 -1
  88. package/ui/AppLogo.d.ts +1 -2
  89. package/ui/AppLogo.js +2 -5
  90. package/ui/AssemblySelector.d.ts +3 -3
  91. package/ui/AssemblySelector.js +11 -33
  92. package/ui/BaseTooltip.d.ts +1 -2
  93. package/ui/BaseTooltip.js +9 -12
  94. package/ui/CascadingMenu.d.ts +1 -2
  95. package/ui/CascadingMenu.js +15 -53
  96. package/ui/CascadingMenuButton.d.ts +1 -2
  97. package/ui/CascadingMenuButton.js +17 -41
  98. package/ui/ColorPicker.d.ts +3 -4
  99. package/ui/ColorPicker.js +33 -31
  100. package/ui/Dialog.d.ts +1 -2
  101. package/ui/Dialog.js +13 -21
  102. package/ui/DraggableDialog.d.ts +5 -0
  103. package/ui/DraggableDialog.js +32 -0
  104. package/ui/DropDownMenu.d.ts +1 -2
  105. package/ui/DropDownMenu.js +8 -34
  106. package/ui/EditableTypography.d.ts +1 -2
  107. package/ui/EditableTypography.js +29 -54
  108. package/ui/ErrorBoundary.d.ts +2 -2
  109. package/ui/ErrorBoundary.js +3 -25
  110. package/ui/ErrorMessage.d.ts +1 -2
  111. package/ui/ErrorMessage.js +25 -25
  112. package/ui/ErrorMessageStackTraceDialog.d.ts +1 -2
  113. package/ui/ErrorMessageStackTraceDialog.js +11 -44
  114. package/ui/FactoryResetDialog.d.ts +1 -2
  115. package/ui/FactoryResetDialog.js +7 -12
  116. package/ui/FatalErrorDialog.d.ts +1 -2
  117. package/ui/FatalErrorDialog.js +10 -41
  118. package/ui/FileSelector/FileSelector.d.ts +1 -2
  119. package/ui/FileSelector/FileSelector.js +37 -76
  120. package/ui/FileSelector/LocalFileChooser.d.ts +1 -2
  121. package/ui/FileSelector/LocalFileChooser.js +17 -28
  122. package/ui/FileSelector/UrlChooser.d.ts +1 -2
  123. package/ui/FileSelector/UrlChooser.js +2 -5
  124. package/ui/Icons.d.ts +9 -10
  125. package/ui/Icons.js +10 -19
  126. package/ui/LoadingEllipses.d.ts +1 -2
  127. package/ui/LoadingEllipses.js +2 -5
  128. package/ui/Logo.d.ts +2 -3
  129. package/ui/Logo.js +5 -23
  130. package/ui/Menu.d.ts +2 -3
  131. package/ui/Menu.js +83 -113
  132. package/ui/MenuButton.d.ts +1 -2
  133. package/ui/MenuButton.js +11 -35
  134. package/ui/PrerenderedCanvas.d.ts +1 -2
  135. package/ui/PrerenderedCanvas.js +3 -25
  136. package/ui/RedErrorMessageBox.d.ts +1 -2
  137. package/ui/RedErrorMessageBox.js +2 -5
  138. package/ui/ResizeHandle.d.ts +1 -2
  139. package/ui/ResizeHandle.js +3 -25
  140. package/ui/ReturnToImportFormDialog.d.ts +1 -2
  141. package/ui/ReturnToImportFormDialog.js +7 -12
  142. package/ui/SanitizedHTML.d.ts +2 -3
  143. package/ui/SanitizedHTML.js +3 -3
  144. package/ui/Snackbar.d.ts +1 -2
  145. package/ui/Snackbar.js +41 -20
  146. package/ui/SnackbarContents.d.ts +5 -0
  147. package/ui/SnackbarContents.js +16 -0
  148. package/ui/SnackbarModel.js +20 -9
  149. package/ui/colors.js +1 -1
  150. package/ui/index.d.ts +0 -2
  151. package/ui/index.js +1 -5
  152. package/ui/react-colorful.js +17 -7
  153. package/ui/theme.js +7 -0
  154. package/util/index.d.ts +13 -11
  155. package/util/index.js +31 -11
  156. package/util/io/RemoteFileWithRangeCache.d.ts +3 -5
  157. package/util/io/RemoteFileWithRangeCache.js +8 -6
  158. package/util/io/index.d.ts +1 -1
  159. package/util/io/index.js +3 -3
  160. package/util/nanoid.d.ts +1 -1
  161. package/util/offscreenCanvasUtils.d.ts +2 -3
  162. package/util/offscreenCanvasUtils.js +21 -13
  163. package/util/tracks.d.ts +1 -1
  164. package/util/tracks.js +8 -3
  165. package/util/useMeasure.d.ts +1 -1
@@ -1,8 +1,7 @@
1
- import React from 'react';
2
1
  import type { MenuItem } from './Menu';
3
2
  declare const DropDownMenu: ({ menuTitle, session, menuItems, }: {
4
3
  menuTitle: string;
5
4
  session: any;
6
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  menuItems: MenuItem[];
7
- }) => React.JSX.Element;
6
+ }) => import("react/jsx-runtime").JSX.Element;
8
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  export default DropDownMenu;
@@ -1,32 +1,10 @@
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1
  "use strict";
2
- var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
- if (k2 === undefined) k2 = k;
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- var desc = Object.getOwnPropertyDescriptor(m, k);
5
- if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
- desc = { enumerable: true, get: function() { return m[k]; } };
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- }
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- Object.defineProperty(o, k2, desc);
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- }) : (function(o, m, k, k2) {
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- if (k2 === undefined) k2 = k;
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- o[k2] = m[k];
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- }));
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- var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
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- Object.defineProperty(o, "default", { enumerable: true, value: v });
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- }) : function(o, v) {
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- o["default"] = v;
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- });
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- var __importStar = (this && this.__importStar) || function (mod) {
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- if (mod && mod.__esModule) return mod;
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- var result = {};
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- if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
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- __setModuleDefault(result, mod);
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- return result;
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- };
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  var __importDefault = (this && this.__importDefault) || function (mod) {
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  return (mod && mod.__esModule) ? mod : { "default": mod };
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
29
- const react_1 = __importStar(require("react"));
6
+ const jsx_runtime_1 = require("react/jsx-runtime");
7
+ const react_1 = require("react");
30
8
  const ArrowDropDown_1 = __importDefault(require("@mui/icons-material/ArrowDropDown"));
31
9
  const material_1 = require("@mui/material");
32
10
  const mobx_react_1 = require("mobx-react");
@@ -49,15 +27,11 @@ const DropDownMenu = (0, mobx_react_1.observer)(function ({ menuTitle, session,
49
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  function handleClose() {
50
28
  setOpen(false);
51
29
  }
52
- return (react_1.default.createElement(react_1.default.Fragment, null,
53
- react_1.default.createElement(material_1.Button, { ref: anchorEl, onClick: () => {
54
- setOpen(!open);
55
- }, color: "inherit", "data-testid": "dropDownMenuButton", classes: { root: classes.buttonRoot } },
56
- menuTitle,
57
- react_1.default.createElement(ArrowDropDown_1.default, null)),
58
- react_1.default.createElement(Menu_1.default, { anchorEl: anchorEl.current, anchorOrigin: { vertical: 'bottom', horizontal: 'left' }, onMenuItemClick: (_event, callback) => {
59
- callback(session);
60
- handleClose();
61
- }, open: open, onClose: handleClose, menuItems: menuItems })));
30
+ return ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsxs)(material_1.Button, { ref: anchorEl, onClick: () => {
31
+ setOpen(!open);
32
+ }, color: "inherit", "data-testid": "dropDownMenuButton", classes: { root: classes.buttonRoot }, children: [menuTitle, (0, jsx_runtime_1.jsx)(ArrowDropDown_1.default, {})] }), (0, jsx_runtime_1.jsx)(Menu_1.default, { anchorEl: anchorEl.current, anchorOrigin: { vertical: 'bottom', horizontal: 'left' }, onMenuItemClick: (_event, callback) => {
33
+ callback(session);
34
+ handleClose();
35
+ }, open: open, onClose: handleClose, menuItems: menuItems })] }));
62
36
  });
63
37
  exports.default = DropDownMenu;
@@ -1,4 +1,3 @@
1
- import React from 'react';
2
1
  import type { TypographyProps } from '@mui/material';
3
2
  type Variant = TypographyProps['variant'];
4
3
  type EditableTypographyClassKey = 'input' | 'inputBase' | 'inputRoot' | 'inputFocused';
@@ -8,5 +7,5 @@ interface Props {
8
7
  variant: Variant;
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8
  classes?: Partial<Record<EditableTypographyClassKey, string>>;
10
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  }
11
- declare const EditableTypography: React.ForwardRefExoticComponent<Props & React.RefAttributes<HTMLDivElement>>;
10
+ declare const EditableTypography: import("react").ForwardRefExoticComponent<Props & import("react").RefAttributes<HTMLDivElement>>;
12
11
  export default EditableTypography;
@@ -1,32 +1,10 @@
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  "use strict";
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- var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
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- if (k2 === undefined) k2 = k;
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- var desc = Object.getOwnPropertyDescriptor(m, k);
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- if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
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- desc = { enumerable: true, get: function() { return m[k]; } };
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- }
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- Object.defineProperty(o, k2, desc);
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- }) : (function(o, m, k, k2) {
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- if (k2 === undefined) k2 = k;
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- o[k2] = m[k];
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- }));
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- var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
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- Object.defineProperty(o, "default", { enumerable: true, value: v });
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- }) : function(o, v) {
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- o["default"] = v;
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- });
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- var __importStar = (this && this.__importStar) || function (mod) {
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- if (mod && mod.__esModule) return mod;
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- var result = {};
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- if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
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- __setModuleDefault(result, mod);
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- return result;
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- };
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  var __importDefault = (this && this.__importDefault) || function (mod) {
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  return (mod && mod.__esModule) ? mod : { "default": mod };
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
29
- const react_1 = __importStar(require("react"));
6
+ const jsx_runtime_1 = require("react/jsx-runtime");
7
+ const react_1 = require("react");
30
8
  const useMeasure_1 = __importDefault(require("@jbrowse/core/util/useMeasure"));
31
9
  const material_1 = require("@mui/material");
32
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  const mui_1 = require("tss-react/mui");
@@ -48,7 +26,7 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
48
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  borderWidth: 2,
49
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  },
50
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  }));
51
- const EditableTypography = react_1.default.forwardRef(function EditableTypography2(props, ref) {
29
+ const EditableTypography = (0, react_1.forwardRef)(function EditableTypography2(props, ref) {
52
30
  const { value, setValue, variant, ...other } = props;
53
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  const [ref2, { width }] = (0, useMeasure_1.default)();
54
32
  const [editedValue, setEditedValue] = (0, react_1.useState)();
@@ -63,35 +41,32 @@ const EditableTypography = react_1.default.forwardRef(function EditableTypograph
63
41
  const { classes } = useStyles(props, { props });
64
42
  const theme = (0, material_1.useTheme)();
65
43
  const val = editedValue === undefined ? value : editedValue;
66
- return (react_1.default.createElement("div", { ...other, ref: ref },
67
- react_1.default.createElement("div", { style: { position: 'relative' } },
68
- react_1.default.createElement(material_1.Typography, { ref: ref2, component: "span", variant: variant, className: classes.typography }, val)),
69
- react_1.default.createElement(material_1.InputBase, { inputRef: node => {
70
- setInputNode(node);
71
- }, className: classes.inputBase, inputProps: {
72
- style: {
73
- width,
74
- ...(variant && variant !== 'inherit'
75
- ? theme.typography[variant]
76
- : {}),
77
- },
78
- }, classes: {
79
- input: classes.input,
80
- root: classes.inputRoot,
81
- focused: classes.inputFocused,
82
- }, value: val, onChange: event => {
83
- setEditedValue(event.target.value);
84
- }, onKeyDown: event => {
85
- if (event.key === 'Enter') {
86
- inputNode === null || inputNode === void 0 ? void 0 : inputNode.blur();
87
- }
88
- else if (event.key === 'Escape') {
44
+ return ((0, jsx_runtime_1.jsxs)("div", { ...other, ref: ref, children: [(0, jsx_runtime_1.jsx)("div", { style: { position: 'relative' }, children: (0, jsx_runtime_1.jsx)(material_1.Typography, { ref: ref2, component: "span", variant: variant, className: classes.typography, children: val }) }), (0, jsx_runtime_1.jsx)(material_1.InputBase, { inputRef: node => {
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+ setInputNode(node);
46
+ }, className: classes.inputBase, inputProps: {
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+ style: {
48
+ width,
49
+ ...(variant && variant !== 'inherit'
50
+ ? theme.typography[variant]
51
+ : {}),
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+ },
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+ }, classes: {
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+ input: classes.input,
55
+ root: classes.inputRoot,
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+ focused: classes.inputFocused,
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+ }, value: val, onChange: event => {
58
+ setEditedValue(event.target.value);
59
+ }, onKeyDown: event => {
60
+ if (event.key === 'Enter') {
61
+ inputNode === null || inputNode === void 0 ? void 0 : inputNode.blur();
62
+ }
63
+ else if (event.key === 'Escape') {
64
+ setEditedValue(undefined);
65
+ setBlur(true);
66
+ }
67
+ }, onBlur: () => {
68
+ setValue(editedValue || value || '');
89
69
  setEditedValue(undefined);
90
- setBlur(true);
91
- }
92
- }, onBlur: () => {
93
- setValue(editedValue || value || '');
94
- setEditedValue(undefined);
95
- } })));
70
+ } })] }));
96
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  });
97
72
  exports.default = EditableTypography;
@@ -1,5 +1,5 @@
1
1
  import type { ErrorInfo } from 'react';
2
- import React, { Component } from 'react';
2
+ import { Component } from 'react';
3
3
  interface Props {
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  children: React.ReactNode;
5
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  FallbackComponent: React.FC<{
@@ -12,6 +12,6 @@ interface State {
12
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  declare class ErrorBoundary extends Component<Props, State> {
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  constructor(props: Props);
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  componentDidCatch(error: Error, errorInfo: ErrorInfo): void;
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- render(): string | number | boolean | Iterable<React.ReactNode> | React.JSX.Element | null | undefined;
15
+ render(): string | number | bigint | boolean | Iterable<import("react").ReactNode> | Promise<string | number | bigint | boolean | import("react").ReactPortal | import("react").ReactElement<unknown, string | import("react").JSXElementConstructor<any>> | Iterable<import("react").ReactNode> | null | undefined> | import("react/jsx-runtime").JSX.Element | null | undefined;
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  }
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  export { ErrorBoundary };
@@ -1,30 +1,8 @@
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  "use strict";
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- var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
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- if (k2 === undefined) k2 = k;
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- var desc = Object.getOwnPropertyDescriptor(m, k);
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- if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
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- desc = { enumerable: true, get: function() { return m[k]; } };
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- }
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- Object.defineProperty(o, k2, desc);
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- }) : (function(o, m, k, k2) {
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- if (k2 === undefined) k2 = k;
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- o[k2] = m[k];
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- }));
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- var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
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- Object.defineProperty(o, "default", { enumerable: true, value: v });
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- }) : function(o, v) {
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- o["default"] = v;
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- });
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- var __importStar = (this && this.__importStar) || function (mod) {
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- if (mod && mod.__esModule) return mod;
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- var result = {};
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- if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
22
- __setModuleDefault(result, mod);
23
- return result;
24
- };
25
2
  Object.defineProperty(exports, "__esModule", { value: true });
26
3
  exports.ErrorBoundary = void 0;
27
- const react_1 = __importStar(require("react"));
4
+ const jsx_runtime_1 = require("react/jsx-runtime");
5
+ const react_1 = require("react");
28
6
  class ErrorBoundary extends react_1.Component {
29
7
  constructor(props) {
30
8
  super(props);
@@ -35,7 +13,7 @@ class ErrorBoundary extends react_1.Component {
35
13
  this.setState({ error });
36
14
  }
37
15
  render() {
38
- return this.state.error ? (react_1.default.createElement(this.props.FallbackComponent, { error: this.state.error })) : (this.props.children);
16
+ return this.state.error ? ((0, jsx_runtime_1.jsx)(this.props.FallbackComponent, { error: this.state.error })) : (this.props.children);
39
17
  }
40
18
  }
41
19
  exports.ErrorBoundary = ErrorBoundary;
@@ -1,6 +1,5 @@
1
- import React from 'react';
2
1
  declare function ErrorMessage({ error, onReset, }: {
3
2
  error: unknown;
4
3
  onReset?: () => void;
5
- }): React.JSX.Element;
4
+ }): import("react/jsx-runtime").JSX.Element;
6
5
  export default ErrorMessage;
@@ -15,18 +15,29 @@ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (
15
15
  }) : function(o, v) {
16
16
  o["default"] = v;
17
17
  });
18
- var __importStar = (this && this.__importStar) || function (mod) {
19
- if (mod && mod.__esModule) return mod;
20
- var result = {};
21
- if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
22
- __setModuleDefault(result, mod);
23
- return result;
24
- };
18
+ var __importStar = (this && this.__importStar) || (function () {
19
+ var ownKeys = function(o) {
20
+ ownKeys = Object.getOwnPropertyNames || function (o) {
21
+ var ar = [];
22
+ for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
23
+ return ar;
24
+ };
25
+ return ownKeys(o);
26
+ };
27
+ return function (mod) {
28
+ if (mod && mod.__esModule) return mod;
29
+ var result = {};
30
+ if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
31
+ __setModuleDefault(result, mod);
32
+ return result;
33
+ };
34
+ })();
25
35
  var __importDefault = (this && this.__importDefault) || function (mod) {
26
36
  return (mod && mod.__esModule) ? mod : { "default": mod };
27
37
  };
28
38
  Object.defineProperty(exports, "__esModule", { value: true });
29
- const react_1 = __importStar(require("react"));
39
+ const jsx_runtime_1 = require("react/jsx-runtime");
40
+ const react_1 = require("react");
30
41
  const Refresh_1 = __importDefault(require("@mui/icons-material/Refresh"));
31
42
  const Report_1 = __importDefault(require("@mui/icons-material/Report"));
32
43
  const material_1 = require("@mui/material");
@@ -66,19 +77,11 @@ function parseError(str) {
66
77
  function ErrorButtons({ error, onReset, }) {
67
78
  const { classes } = useStyles();
68
79
  const [showStack, setShowStack] = (0, react_1.useState)(false);
69
- return (react_1.default.createElement("div", { className: classes.iconFloat },
70
- typeof error === 'object' && error && 'stack' in error ? (react_1.default.createElement(material_1.Tooltip, { title: "Get stack trace" },
71
- react_1.default.createElement(material_1.IconButton, { onClick: () => {
72
- setShowStack(true);
73
- }, color: "primary" },
74
- react_1.default.createElement(Report_1.default, null)))) : null,
75
- onReset ? (react_1.default.createElement(material_1.Tooltip, { title: "Retry" },
76
- react_1.default.createElement(material_1.IconButton, { onClick: onReset, color: "primary" },
77
- react_1.default.createElement(Refresh_1.default, null)))) : null,
78
- showStack ? (react_1.default.createElement(react_1.Suspense, { fallback: null },
79
- react_1.default.createElement(ErrorMessageStackTraceDialog, { error: error, onClose: () => {
80
- setShowStack(false);
81
- } }))) : null));
80
+ return ((0, jsx_runtime_1.jsxs)("div", { className: classes.iconFloat, children: [typeof error === 'object' && error && 'stack' in error ? ((0, jsx_runtime_1.jsx)(material_1.Tooltip, { title: "Get stack trace", children: (0, jsx_runtime_1.jsx)(material_1.IconButton, { onClick: () => {
81
+ setShowStack(true);
82
+ }, color: "primary", children: (0, jsx_runtime_1.jsx)(Report_1.default, {}) }) })) : null, onReset ? ((0, jsx_runtime_1.jsx)(material_1.Tooltip, { title: "Retry", children: (0, jsx_runtime_1.jsx)(material_1.IconButton, { onClick: onReset, color: "primary", children: (0, jsx_runtime_1.jsx)(Refresh_1.default, {}) }) })) : null, showStack ? ((0, jsx_runtime_1.jsx)(react_1.Suspense, { fallback: null, children: (0, jsx_runtime_1.jsx)(ErrorMessageStackTraceDialog, { error: error, onClose: () => {
83
+ setShowStack(false);
84
+ } }) })) : null] }));
82
85
  }
83
86
  function ErrorMessage({ error, onReset, }) {
84
87
  const { classes } = useStyles();
@@ -86,9 +89,6 @@ function ErrorMessage({ error, onReset, }) {
86
89
  const str2 = str.indexOf('expected an instance of');
87
90
  const str3 = str2 !== -1 ? str.slice(0, str2) : str;
88
91
  const snapshotError = parseError(str);
89
- return (react_1.default.createElement(RedErrorMessageBox_1.default, null,
90
- str3.slice(0, 10000),
91
- react_1.default.createElement(ErrorButtons, { error: error, onReset: onReset }),
92
- snapshotError ? (react_1.default.createElement("pre", { className: classes.bg }, JSON.stringify(JSON.parse(snapshotError), null, 2))) : null));
92
+ return ((0, jsx_runtime_1.jsxs)(RedErrorMessageBox_1.default, { children: [str3.slice(0, 10000), (0, jsx_runtime_1.jsx)(ErrorButtons, { error: error, onReset: onReset }), snapshotError ? ((0, jsx_runtime_1.jsx)("pre", { className: classes.bg, children: JSON.stringify(JSON.parse(snapshotError), null, 2) })) : null] }));
93
93
  }
94
94
  exports.default = ErrorMessage;
@@ -1,6 +1,5 @@
1
- import React from 'react';
2
1
  export default function ErrorMessageStackTraceDialog({ error, onClose, extra, }: {
3
2
  onClose: () => void;
4
3
  error: unknown;
5
4
  extra?: unknown;
6
- }): React.JSX.Element;
5
+ }): import("react/jsx-runtime").JSX.Element;
@@ -1,33 +1,11 @@
1
1
  "use strict";
2
- var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
- if (k2 === undefined) k2 = k;
4
- var desc = Object.getOwnPropertyDescriptor(m, k);
5
- if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
- desc = { enumerable: true, get: function() { return m[k]; } };
7
- }
8
- Object.defineProperty(o, k2, desc);
9
- }) : (function(o, m, k, k2) {
10
- if (k2 === undefined) k2 = k;
11
- o[k2] = m[k];
12
- }));
13
- var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
14
- Object.defineProperty(o, "default", { enumerable: true, value: v });
15
- }) : function(o, v) {
16
- o["default"] = v;
17
- });
18
- var __importStar = (this && this.__importStar) || function (mod) {
19
- if (mod && mod.__esModule) return mod;
20
- var result = {};
21
- if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
22
- __setModuleDefault(result, mod);
23
- return result;
24
- };
25
2
  var __importDefault = (this && this.__importDefault) || function (mod) {
26
3
  return (mod && mod.__esModule) ? mod : { "default": mod };
27
4
  };
28
5
  Object.defineProperty(exports, "__esModule", { value: true });
29
6
  exports.default = ErrorMessageStackTraceDialog;
30
- const react_1 = __importStar(require("react"));
7
+ const jsx_runtime_1 = require("react/jsx-runtime");
8
+ const react_1 = require("react");
31
9
  const material_1 = require("@mui/material");
32
10
  const copy_to_clipboard_1 = __importDefault(require("copy-to-clipboard"));
33
11
  const source_map_js_1 = require("source-map-js");
@@ -35,7 +13,7 @@ const mui_1 = require("tss-react/mui");
35
13
  const Dialog_1 = __importDefault(require("./Dialog"));
36
14
  const LoadingEllipses_1 = __importDefault(require("./LoadingEllipses"));
37
15
  function Link2({ href, children, }) {
38
- return (react_1.default.createElement(material_1.Link, { target: "_blank", href: href }, children));
16
+ return ((0, jsx_runtime_1.jsx)(material_1.Link, { target: "_blank", href: href, children: children }));
39
17
  }
40
18
  async function myfetch(uri) {
41
19
  const res = await fetch(uri);
@@ -128,14 +106,7 @@ function Contents({ text, extra }) {
128
106
  const email = 'jbrowse2@berkeley.edu';
129
107
  const githubLink = `https://github.com/GMOD/jbrowse-components/issues/new?labels=bug&title=JBrowse+issue&body=${err}`;
130
108
  const emailLink = `mailto:${email}?subject=JBrowse%202%20error&body=${err}`;
131
- return (react_1.default.createElement(react_1.default.Fragment, null,
132
- react_1.default.createElement(material_1.Typography, null,
133
- "Post a new issue at ",
134
- react_1.default.createElement(Link2, { href: githubLink }, "GitHub"),
135
- " or send an email to ",
136
- react_1.default.createElement(Link2, { href: emailLink }, email),
137
- ' '),
138
- react_1.default.createElement("pre", { className: classes.pre }, err2)));
109
+ return ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsxs)(material_1.Typography, { children: ["Post a new issue at ", (0, jsx_runtime_1.jsx)(Link2, { href: githubLink, children: "GitHub" }), " or send an email to ", (0, jsx_runtime_1.jsx)(Link2, { href: emailLink, children: email }), ' '] }), (0, jsx_runtime_1.jsx)("pre", { className: classes.pre, children: err2 })] }));
139
110
  }
140
111
  function ErrorMessageStackTraceDialog({ error, onClose, extra, }) {
141
112
  const [mappedStackTrace, setMappedStackTrace] = (0, react_1.useState)();
@@ -170,15 +141,11 @@ function ErrorMessageStackTraceDialog({ error, onClose, extra, }) {
170
141
  ]
171
142
  .filter(f => !!f)
172
143
  .join('\n');
173
- return (react_1.default.createElement(Dialog_1.default, { open: true, onClose: onClose, title: "Stack trace", maxWidth: "xl" },
174
- react_1.default.createElement(material_1.DialogContent, null, mappedStackTrace === undefined ? (react_1.default.createElement(LoadingEllipses_1.default, { variant: "h6" })) : (react_1.default.createElement(Contents, { text: errorBoxText, extra: extra }))),
175
- react_1.default.createElement(material_1.DialogActions, null,
176
- react_1.default.createElement(material_1.Button, { variant: "contained", color: "secondary", onClick: () => {
177
- (0, copy_to_clipboard_1.default)(errorBoxText);
178
- setClicked(true);
179
- setTimeout(() => {
180
- setClicked(false);
181
- }, 1000);
182
- } }, clicked ? 'Copied!' : 'Copy stack trace to clipboard'),
183
- react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", onClick: onClose }, "Close"))));
144
+ return ((0, jsx_runtime_1.jsxs)(Dialog_1.default, { open: true, onClose: onClose, title: "Stack trace", maxWidth: "xl", children: [(0, jsx_runtime_1.jsx)(material_1.DialogContent, { children: mappedStackTrace === undefined ? ((0, jsx_runtime_1.jsx)(LoadingEllipses_1.default, { variant: "h6" })) : ((0, jsx_runtime_1.jsx)(Contents, { text: errorBoxText, extra: extra })) }), (0, jsx_runtime_1.jsxs)(material_1.DialogActions, { children: [(0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "secondary", onClick: () => {
145
+ (0, copy_to_clipboard_1.default)(errorBoxText);
146
+ setClicked(true);
147
+ setTimeout(() => {
148
+ setClicked(false);
149
+ }, 1000);
150
+ }, children: clicked ? 'Copied!' : 'Copy stack trace to clipboard' }), (0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "primary", onClick: onClose, children: "Close" })] })] }));
184
151
  }
@@ -1,6 +1,5 @@
1
- import React from 'react';
2
1
  export default function FactoryResetDialog({ onClose, open, onFactoryReset, }: {
3
2
  onClose: () => void;
4
3
  open: boolean;
5
4
  onFactoryReset: () => void;
6
- }): React.JSX.Element;
5
+ }): import("react/jsx-runtime").JSX.Element;
@@ -4,7 +4,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
4
4
  };
5
5
  Object.defineProperty(exports, "__esModule", { value: true });
6
6
  exports.default = FactoryResetDialog;
7
- const react_1 = __importDefault(require("react"));
7
+ const jsx_runtime_1 = require("react/jsx-runtime");
8
8
  const Dialog_1 = __importDefault(require("@jbrowse/core/ui/Dialog"));
9
9
  const material_1 = require("@mui/material");
10
10
  function FactoryResetDialog({ onClose, open, onFactoryReset, }) {
@@ -14,16 +14,11 @@ function FactoryResetDialog({ onClose, open, onFactoryReset, }) {
14
14
  }
15
15
  onClose();
16
16
  }
17
- return (react_1.default.createElement(Dialog_1.default, { title: "Reset", onClose: () => {
17
+ return ((0, jsx_runtime_1.jsxs)(Dialog_1.default, { title: "Reset", onClose: () => {
18
18
  handleDialogClose();
19
- }, open: open },
20
- react_1.default.createElement(material_1.DialogContent, null,
21
- react_1.default.createElement(material_1.DialogContentText, null, "Are you sure you want to reset? This will restore the default configuration.")),
22
- react_1.default.createElement(material_1.DialogActions, null,
23
- react_1.default.createElement(material_1.Button, { onClick: () => {
24
- handleDialogClose();
25
- }, color: "primary" }, "Cancel"),
26
- react_1.default.createElement(material_1.Button, { onClick: () => {
27
- handleDialogClose('reset');
28
- }, color: "primary", variant: "contained" }, "OK"))));
19
+ }, open: open, children: [(0, jsx_runtime_1.jsx)(material_1.DialogContent, { children: (0, jsx_runtime_1.jsx)(material_1.DialogContentText, { children: "Are you sure you want to reset? This will restore the default configuration." }) }), (0, jsx_runtime_1.jsxs)(material_1.DialogActions, { children: [(0, jsx_runtime_1.jsx)(material_1.Button, { onClick: () => {
20
+ handleDialogClose();
21
+ }, color: "primary", children: "Cancel" }), (0, jsx_runtime_1.jsx)(material_1.Button, { onClick: () => {
22
+ handleDialogClose('reset');
23
+ }, color: "primary", variant: "contained", children: "OK" })] })] }));
29
24
  }
@@ -1,7 +1,6 @@
1
- import React from 'react';
2
1
  export default function FatalErrorDialog({ componentStack, error, onFactoryReset, resetButtonText, }: {
3
2
  componentStack?: string;
4
3
  error?: unknown;
5
4
  onFactoryReset: () => void;
6
5
  resetButtonText?: string;
7
- }): React.JSX.Element;
6
+ }): import("react/jsx-runtime").JSX.Element;
@@ -1,55 +1,24 @@
1
1
  "use strict";
2
- var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
- if (k2 === undefined) k2 = k;
4
- var desc = Object.getOwnPropertyDescriptor(m, k);
5
- if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
- desc = { enumerable: true, get: function() { return m[k]; } };
7
- }
8
- Object.defineProperty(o, k2, desc);
9
- }) : (function(o, m, k, k2) {
10
- if (k2 === undefined) k2 = k;
11
- o[k2] = m[k];
12
- }));
13
- var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
14
- Object.defineProperty(o, "default", { enumerable: true, value: v });
15
- }) : function(o, v) {
16
- o["default"] = v;
17
- });
18
- var __importStar = (this && this.__importStar) || function (mod) {
19
- if (mod && mod.__esModule) return mod;
20
- var result = {};
21
- if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
22
- __setModuleDefault(result, mod);
23
- return result;
24
- };
25
2
  var __importDefault = (this && this.__importDefault) || function (mod) {
26
3
  return (mod && mod.__esModule) ? mod : { "default": mod };
27
4
  };
28
5
  Object.defineProperty(exports, "__esModule", { value: true });
29
6
  exports.default = FatalErrorDialog;
30
- const react_1 = __importStar(require("react"));
7
+ const jsx_runtime_1 = require("react/jsx-runtime");
8
+ const react_1 = require("react");
31
9
  const material_1 = require("@mui/material");
32
10
  const ErrorMessage_1 = __importDefault(require("./ErrorMessage"));
33
11
  const FactoryResetDialog_1 = __importDefault(require("./FactoryResetDialog"));
34
12
  const ResetComponent = ({ onFactoryReset, resetButtonText, }) => {
35
13
  const [dialogOpen, setDialogOpen] = (0, react_1.useState)(false);
36
- return (react_1.default.createElement(react_1.default.Fragment, null,
37
- react_1.default.createElement(material_1.Button, { "data-testid": "fatal-error", color: "primary", variant: "contained", onClick: () => {
38
- setDialogOpen(true);
39
- } }, resetButtonText),
40
- react_1.default.createElement(FactoryResetDialog_1.default, { onClose: () => {
41
- setDialogOpen(false);
42
- }, open: dialogOpen, onFactoryReset: onFactoryReset })));
14
+ return ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(material_1.Button, { "data-testid": "fatal-error", color: "primary", variant: "contained", onClick: () => {
15
+ setDialogOpen(true);
16
+ }, children: resetButtonText }), (0, jsx_runtime_1.jsx)(FactoryResetDialog_1.default, { onClose: () => {
17
+ setDialogOpen(false);
18
+ }, open: dialogOpen, onFactoryReset: onFactoryReset })] }));
43
19
  };
44
20
  function FatalErrorDialog({ componentStack, error = 'No error message provided', onFactoryReset, resetButtonText = 'Factory Reset', }) {
45
- return (react_1.default.createElement(material_1.Dialog, { maxWidth: "xl", open: true },
46
- react_1.default.createElement(material_1.DialogTitle, null, "Fatal error"),
47
- react_1.default.createElement(material_1.DialogContent, null,
48
- react_1.default.createElement(ErrorMessage_1.default, { error: error }),
49
- react_1.default.createElement("pre", null, componentStack)),
50
- react_1.default.createElement(material_1.DialogActions, null,
51
- react_1.default.createElement(material_1.Button, { color: "secondary", variant: "contained", onClick: () => {
52
- window.location.reload();
53
- } }, "Refresh"),
54
- react_1.default.createElement(ResetComponent, { onFactoryReset: onFactoryReset, resetButtonText: resetButtonText }))));
21
+ return ((0, jsx_runtime_1.jsxs)(material_1.Dialog, { maxWidth: "xl", open: true, children: [(0, jsx_runtime_1.jsx)(material_1.DialogTitle, { children: "Fatal error" }), (0, jsx_runtime_1.jsxs)(material_1.DialogContent, { children: [(0, jsx_runtime_1.jsx)(ErrorMessage_1.default, { error: error }), (0, jsx_runtime_1.jsx)("pre", { children: componentStack })] }), (0, jsx_runtime_1.jsxs)(material_1.DialogActions, { children: [(0, jsx_runtime_1.jsx)(material_1.Button, { color: "secondary", variant: "contained", onClick: () => {
22
+ window.location.reload();
23
+ }, children: "Refresh" }), (0, jsx_runtime_1.jsx)(ResetComponent, { onFactoryReset: onFactoryReset, resetButtonText: resetButtonText })] })] }));
55
24
  }
@@ -1,4 +1,3 @@
1
- import React from 'react';
2
1
  import type { AbstractRootModel, FileLocation } from '../../util/types';
3
2
  declare const FileSelector: (props: {
4
3
  location?: FileLocation;
@@ -8,5 +7,5 @@ declare const FileSelector: (props: {
8
7
  rootModel?: AbstractRootModel;
9
8
  setLocation: (param: FileLocation) => void;
10
9
  setName?: (str: string) => void;
11
- }) => React.JSX.Element;
10
+ }) => import("react/jsx-runtime").JSX.Element;
12
11
  export default FileSelector;