@jbrowse/core 2.14.0 → 2.15.0

package/BaseFeatureWidget/BaseFeatureDetail/index.js

@@ -1,27 +1,4 @@
 "use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
@@ -29,7 +6,7 @@ Object.defineProperty(exports, "__esModule", { value: true });
 exports.Attributes = exports.BaseAttributes = exports.BaseCoreDetails = void 0;
 exports.BaseCard = BaseCard;
 exports.FeatureDetails = FeatureDetails;
-const react_1 = __importStar(require("react"));
+const react_1 = __importDefault(require("react"));
 const react_error_boundary_1 = require("react-error-boundary");
 const material_1 = require("@mui/material");
 const mui_1 = require("tss-react/mui");
@@ -58,22 +35,14 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
         display: 'block',
         padding: theme.spacing(1),
     },
-    expandIcon: {
+    icon: {
         color: theme.palette.tertiary.contrastText || '#fff',
     },
 }));
 function BaseCard({ children, title, defaultExpanded = true, }) {
     const { classes } = useStyles();
-    const [expanded, setExpanded] = (0, react_1.useState)(defaultExpanded);
-    return (react_1.default.createElement(material_1.Accordion, { expanded: expanded, onChange: () => {
-            setExpanded(s => !s);
-        }, slotProps: {
-            transition: {
-                unmountOnExit: true,
-                timeout: 150,
-            },
-        } },
-        react_1.default.createElement(material_1.AccordionSummary, { expandIcon: react_1.default.createElement(ExpandMore_1.default, { className: classes.expandIcon }) },
+    return (react_1.default.createElement(material_1.Accordion, { defaultExpanded: defaultExpanded },
+        react_1.default.createElement(material_1.AccordionSummary, { expandIcon: react_1.default.createElement(ExpandMore_1.default, { className: classes.icon }) },
             react_1.default.createElement(material_1.Typography, { variant: "button" }, title)),
         react_1.default.createElement(material_1.AccordionDetails, { className: classes.expansionPanelDetails }, children)));
 }

package/data_adapters/BaseAdapter/BaseAdapter.d.ts

@@ -11,7 +11,8 @@ export declare abstract class BaseAdapter {
     constructor(config?: AnyConfigurationModel, getSubAdapter?: getSubAdapterType | undefined, pluginManager?: PluginManager | undefined);
     /**
      * Same as `readConfObject(this.config, arg)`.
-     * @deprecated Does not offer the same TS type checking as `readConfObject`, consider using that instead.
+     * Note: Does not offer the same TS type checking as `readConfObject`,
+     * consider using that instead.
      */
     getConf(arg: string | string[]): any;
     /**

package/data_adapters/BaseAdapter/BaseAdapter.js

@@ -27,7 +27,8 @@ class BaseAdapter {
     }
     /**
      * Same as `readConfObject(this.config, arg)`.
-     * @deprecated Does not offer the same TS type checking as `readConfObject`, consider using that instead.
+     * Note: Does not offer the same TS type checking as `readConfObject`,
+     * consider using that instead.
      */
     getConf(arg) {
         return (0, configuration_1.readConfObject)(this.config, arg);

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/core",
-  "version": "2.14.0",
+  "version": "2.15.0",
   "description": "JBrowse 2 core libraries used by plugins",
   "keywords": [
     "jbrowse",
@@ -34,7 +34,7 @@
     "@gmod/abortable-promise-cache": "^2.0.0",
     "@gmod/bgzf-filehandle": "^1.4.3",
     "@gmod/http-range-fetcher": "^3.0.4",
-    "@mui/icons-material": "^5.0.1",
+    "@mui/icons-material": "^6.0.0",
     "@mui/x-data-grid": "^7.0.0",
     "@types/clone": "^2.0.0",
     "canvas-sequencer": "^3.1.0",
@@ -60,7 +60,7 @@
     "svg-path-generator": "^1.1.0"
   },
   "peerDependencies": {
-    "@mui/material": "^5.0.0",
+    "@mui/material": "^6.0.0",
     "mobx": "^6.0.0",
     "mobx-react": "^9.0.0",
     "mobx-state-tree": "^5.0.0",
@@ -73,5 +73,5 @@
     "access": "public",
     "directory": "dist"
   },
-  "gitHead": "9fb8231d932db40adf0a283081765431756c66ff"
+  "gitHead": "87eeb1fbf8311dbf88d5e75b5a265f03beffdda8"
 }

package/pluggableElementTypes/renderers/RpcRenderedSvgGroup.js

@@ -72,6 +72,7 @@ const OldHydrate = (0, mobx_react_1.observer)(function OldHydrate(props) {
         function doHydrate() {
             if (domNode && html) {
                 if (domNode.innerHTML) {
+                    // eslint-disable-next-line @typescript-eslint/no-deprecated
                     (0, react_dom_1.unmountComponentAtNode)(domNode);
                 }
                 // setting outline:none fixes react "focusable" element issue. see
@@ -82,6 +83,7 @@ const OldHydrate = (0, mobx_react_1.observer)(function OldHydrate(props) {
                 // hydration for when we have some free time. helps keep the
                 // framerate up.
                 (0, util_1.rIC)(() => {
+                    // eslint-disable-next-line @typescript-eslint/no-deprecated
                     (0, react_dom_1.hydrate)(react_1.default.createElement(RenderingComponent, { ...props }), domNode);
                 });
             }
@@ -89,6 +91,7 @@ const OldHydrate = (0, mobx_react_1.observer)(function OldHydrate(props) {
         doHydrate();
         return () => {
             if (domNode) {
+                // eslint-disable-next-line @typescript-eslint/no-deprecated
                 (0, react_dom_1.unmountComponentAtNode)(domNode);
             }
         };

package/pluggableElementTypes/renderers/ServerSideRenderedContent.js

@@ -75,9 +75,11 @@ const OldHydrate = (0, mobx_react_1.observer)(function ({ theme, html, Rendering
         const domNode = ref.current;
         function doHydrate() {
             if (domNode) {
+                // eslint-disable-next-line @typescript-eslint/no-deprecated
                 (0, react_dom_1.unmountComponentAtNode)(domNode);
                 domNode.innerHTML = html;
                 (0, util_1.rIC)(() => {
+                    // eslint-disable-next-line @typescript-eslint/no-deprecated
                     (0, react_dom_1.hydrate)(react_1.default.createElement(styles_1.ThemeProvider, { theme: jbrowseTheme },
                         react_1.default.createElement(RenderingComponent, { ...rest })), domNode);
                 });
@@ -86,6 +88,7 @@ const OldHydrate = (0, mobx_react_1.observer)(function ({ theme, html, Rendering
         doHydrate();
         return () => {
             if (domNode) {
+                // eslint-disable-next-line @typescript-eslint/no-deprecated
                 (0, react_dom_1.unmountComponentAtNode)(domNode);
             }
         };