@jbrowse/core 2.12.0 → 2.12.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +1 -1
- package/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +1 -1
- package/BaseFeatureWidget/BaseFeatureDetail/BasicValue.js +1 -1
- package/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.js +1 -1
- package/BaseFeatureWidget/BaseFeatureDetail/FieldName.js +1 -1
- package/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +1 -1
- package/BaseFeatureWidget/BaseFeatureDetail/UriField.js +1 -1
- package/BaseFeatureWidget/BaseFeatureDetail/index.js +3 -3
- package/BaseFeatureWidget/BaseFeatureDetail/util.js +4 -5
- package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.js +1 -1
- package/BaseFeatureWidget/SequenceFeatureDetails/hooks.js +1 -2
- package/BaseFeatureWidget/SequenceFeatureDetails/model.d.ts +1 -1
- package/BaseFeatureWidget/SequenceFeatureDetails/model.js +1 -2
- package/BaseFeatureWidget/SequenceFeatureDetails/util.js +2 -2
- package/BaseFeatureWidget/stateModelFactory.d.ts +2 -6
- package/BaseFeatureWidget/stateModelFactory.js +1 -2
- package/BaseFeatureWidget/util.d.ts +5 -5
- package/BaseFeatureWidget/util.js +6 -7
- package/PluginLoader.js +4 -5
- package/PluginManager.d.ts +6 -7
- package/ReExports/modules.d.ts +6 -6
- package/TextSearch/TextSearchManager.d.ts +6 -2
- package/assemblyManager/assembly.js +1 -1
- package/assemblyManager/assemblyManager.d.ts +9 -82
- package/configuration/configurationSchema.d.ts +7 -1
- package/configuration/configurationSchema.js +2 -3
- package/configuration/configurationSlot.js +1 -1
- package/configuration/util.d.ts +1 -1
- package/configuration/util.js +7 -8
- package/data_adapters/BaseAdapter/util.js +5 -6
- package/data_adapters/CytobandAdapter/CytobandAdapter.d.ts +0 -1
- package/data_adapters/CytobandAdapter/CytobandAdapter.js +1 -2
- package/data_adapters/CytobandAdapter/index.js +1 -1
- package/data_adapters/dataAdapterCache.js +4 -5
- package/package.json +3 -3
- package/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts +1 -3
- package/pluggableElementTypes/models/BaseDisplayModel.d.ts +3 -3
- package/pluggableElementTypes/models/BaseTrackModel.d.ts +6 -2
- package/pluggableElementTypes/models/BaseTrackModel.js +2 -3
- package/pluggableElementTypes/models/InternetAccountModel.d.ts +13 -13
- package/pluggableElementTypes/models/baseTrackConfig.js +1 -2
- package/rpc/BaseRpcDriver.js +1 -2
- package/rpc/methods/util.js +1 -2
- package/rpc/remoteAbortSignals.js +5 -6
- package/stories/examples/WithSequencePanel.js +5 -6
- package/tsconfig.build.tsbuildinfo +1 -1
- package/ui/ColorPicker.js +3 -3
- package/ui/ErrorMessageStackTraceDialog.js +1 -1
- package/ui/FactoryResetDialog.js +1 -1
- package/ui/FatalErrorDialog.js +1 -1
- package/ui/Icons.js +9 -10
- package/ui/LoadingEllipses.js +1 -1
- package/ui/Logo.js +2 -3
- package/ui/Menu.js +1 -2
- package/ui/RedErrorMessageBox.js +1 -1
- package/ui/SanitizedHTML.js +1 -1
- package/ui/SnackbarModel.js +1 -1
- package/ui/theme.js +3 -3
- package/util/Base1DUtils.js +4 -5
- package/util/Base1DViewModel.d.ts +2 -2
- package/util/aborting.js +5 -6
- package/util/analytics.js +3 -4
- package/util/blobToDataURL.js +1 -2
- package/util/calculateDynamicBlocks.js +1 -1
- package/util/calculateStaticBlocks.js +1 -1
- package/util/color/cssColorsLevel4.js +2 -3
- package/util/color/index.js +4 -4
- package/util/dedupe.js +1 -2
- package/util/formatFastaStrings.js +2 -3
- package/util/idMaker.js +1 -1
- package/util/index.d.ts +2 -2
- package/util/index.js +70 -71
- package/util/io/RemoteFileWithRangeCache.d.ts +0 -1
- package/util/io/RemoteFileWithRangeCache.js +3 -3
- package/util/io/index.js +4 -4
- package/util/jexl.js +1 -1
- package/util/jexlStrings.js +1 -2
- package/util/map-obj.js +1 -1
- package/util/mst-reflection.js +6 -7
- package/util/offscreenCanvasPonyfill.js +2 -2
- package/util/offscreenCanvasUtils.js +3 -4
- package/util/range.js +3 -4
- package/util/rxjs.js +1 -2
- package/util/simpleFeature.js +1 -2
- package/util/stats.js +5 -6
- package/util/tracks.js +17 -17
- package/util/types/index.js +23 -23
- package/util/types/mst.d.ts +0 -1
- package/util/useMeasure.d.ts +2 -3
- package/util/useMeasure.js +1 -1
- package/util/when.js +2 -3
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@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
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return (mod && mod.__esModule) ? mod : { "default": mod };
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.default = ArrayValue;
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const react_1 = __importDefault(require("react"));
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const is_object_1 = __importDefault(require("is-object"));
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const mui_1 = require("tss-react/mui");
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@@ -41,4 +42,3 @@ function ArrayValue({ name, value, description, prefix = [], }) {
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react_1.default.createElement(BasicValue_1.default, { value: val }))))));
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}
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}
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exports.default = ArrayValue;
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return (mod && mod.__esModule) ? mod : { "default": mod };
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.default = Attributes;
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const react_1 = __importDefault(require("react"));
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const is_object_1 = __importDefault(require("is-object"));
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// locals
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}
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})));
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}
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exports.default = Attributes;
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.default = BasicValue;
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const react_1 = __importDefault(require("react"));
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const mui_1 = require("tss-react/mui");
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const is_object_1 = __importDefault(require("is-object"));
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const isLink = `${value}`.match(/^https?:\/\//);
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return (react_1.default.createElement("div", { className: classes.fieldValue }, react_1.default.isValidElement(value) ? (value) : isLink ? (react_1.default.createElement(material_1.Link, { href: `${value}` }, `${value}`)) : (react_1.default.createElement(ui_1.SanitizedHTML, { html: (0, is_object_1.default)(value) ? JSON.stringify(value) : String(value) }))));
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}
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exports.default = BasicValue;
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.default = DataGridDetails;
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const react_1 = __importStar(require("react"));
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const mui_1 = require("tss-react/mui");
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const x_data_grid_1 = require("@mui/x-data-grid");
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}
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return null;
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}
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exports.default = DataGridDetails;
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.default = FieldName;
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const react_1 = __importDefault(require("react"));
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const material_1 = require("@mui/material");
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const mui_1 = require("tss-react/mui");
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return description ? (react_1.default.createElement(material_1.Tooltip, { title: description, placement: "left" },
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react_1.default.createElement("div", { className: cx(classes.fieldDescription, classes.fieldName) }, val))) : (react_1.default.createElement("div", { className: classes.fieldName, style: { width: width } }, val));
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}
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exports.default = FieldName;
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.default = SimpleField;
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const react_1 = __importDefault(require("react"));
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const mui_1 = require("tss-react/mui");
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const FieldName_1 = __importDefault(require("./FieldName"));
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react_1.default.createElement(FieldName_1.default, { prefix: prefix, description: description, name: name, width: width }),
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react_1.default.createElement(BasicValue_1.default, { value: value }))) : null;
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}
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exports.default = SimpleField;
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};
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.default = UriField;
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const react_1 = __importDefault(require("react"));
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const FieldName_1 = __importDefault(require("./FieldName"));
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const mui_1 = require("tss-react/mui");
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react_1.default.createElement(FieldName_1.default, { prefix: prefix, name: name }),
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react_1.default.createElement(BasicValue_1.default, { value: href })));
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}
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exports.default = UriField;
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exports.Attributes = exports.
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exports.Attributes = exports.BaseAttributes = exports.BaseCoreDetails = void 0;
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exports.BaseCard = BaseCard;
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exports.FeatureDetails = FeatureDetails;
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/* eslint-disable @typescript-eslint/no-explicit-any */
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const react_1 = __importStar(require("react"));
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const react_error_boundary_1 = require("react-error-boundary");
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react_1.default.createElement(material_1.Typography, { variant: "button" }, title)),
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react_1.default.createElement(material_1.AccordionDetails, { className: classes.expansionPanelDetails }, children)));
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}
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exports.BaseCard = BaseCard;
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function Position(props) {
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const { feature } = props;
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const strand = feature.strand;
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react_1.default.createElement(ExtraPanel.Component, { ...props })))) : null,
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depth < maxDepth && (subfeatures === null || subfeatures === void 0 ? void 0 : subfeatures.length) ? (react_1.default.createElement(BaseCard, { title: "Subfeatures", defaultExpanded: depth < 1 }, subfeatures.map((sub, idx) => (react_1.default.createElement(FeatureDetails, { key: JSON.stringify(sub), feature: { ...sub, uniqueId: `${uniqueId}_${idx}` }, model: model, depth: depth + 1 }))))) : null));
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}
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exports.FeatureDetails = FeatureDetails;
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const BaseFeatureDetail = (0, mobx_react_1.observer)(function ({ model }) {
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const { error, featureData } = model;
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if (error) {
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exports.
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exports.isEmpty = isEmpty;
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exports.generateTitle = generateTitle;
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exports.generateMaxWidth = generateMaxWidth;
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exports.accessNested = accessNested;
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const util_2 = require("../util");
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function isEmpty(obj) {
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exports.isEmpty = isEmpty;
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function generateTitle(name, id, type) {
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.filter(f => !!f)
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function generateMaxWidth(array, prefix) {
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// pick using a path from an object, similar to _.get from lodash with special
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// logic for Descriptions from e.g. VCF headers
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//
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exports.genomeColor = exports.updownstreamColor = exports.cdsColor = exports.proteinColor = exports.utrColor = exports.intronColor = void 0;
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exports.splitString = splitString;
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setUpDownBp(f: number): void;
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|
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|
-
setIntronBp(f: number): void;
|
|
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|
-
* #property
|
|
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|
-
*/
|
|
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|
+
setIntronBp(f: number): void;
|
|
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66
|
setUpperCaseCDS(f: boolean): void;
|
|
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|
setShowCoordinates(f: "none" | "relative" | "genomic"): void;
|
|
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|
setMode(mode: string): void;
|
|
@@ -157,9 +155,7 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
|
|
|
157
155
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} & {
|
|
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|
setFeature(f: import("../util").SimpleFeatureSerialized): void;
|
|
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|
setUpDownBp(f: number): void;
|
|
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|
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setIntronBp(f: number): void;
|
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|
|
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|
-
*/
|
|
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|
+
setIntronBp(f: number): void;
|
|
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|
setUpperCaseCDS(f: boolean): void;
|
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setShowCoordinates(f: "none" | "relative" | "genomic"): void;
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|
setMode(mode: string): void;
|
|
@@ -3,7 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
|
3
3
|
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
4
4
|
};
|
|
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5
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
|
-
exports.stateModelFactory =
|
|
6
|
+
exports.stateModelFactory = stateModelFactory;
|
|
7
7
|
const mobx_state_tree_1 = require("mobx-state-tree");
|
|
8
8
|
const mobx_1 = require("mobx");
|
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9
9
|
const clone_1 = __importDefault(require("clone"));
|
|
@@ -170,4 +170,3 @@ function stateModelFactory(pluginManager) {
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|
};
|
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|
});
|
|
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|
}
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|
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|
-
exports.stateModelFactory = stateModelFactory;
|
|
@@ -25,16 +25,16 @@ export declare function dedupe(list: Feat[]): Feat[];
|
|
|
25
25
|
export declare function revlist(list: Feat[], seqlen: number): {
|
|
26
26
|
start: number;
|
|
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27
|
end: number;
|
|
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|
-
type?: string
|
|
29
|
-
name?: string
|
|
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|
-
id?: string
|
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|
+
type?: string;
|
|
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|
+
name?: string;
|
|
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|
+
id?: string;
|
|
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|
}[];
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|
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|
export declare function calculateUTRs(cds: Feat[], exons: Feat[]): {
|
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|
type: string;
|
|
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|
start: number;
|
|
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|
end: number;
|
|
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|
-
name?: string
|
|
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|
-
id?: string
|
|
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|
+
name?: string;
|
|
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|
+
id?: string;
|
|
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38
|
}[];
|
|
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39
|
export declare function calculateUTRs2(cds: Feat[], parentFeat: Feat): {
|
|
40
40
|
type: string;
|
|
@@ -1,10 +1,14 @@
|
|
|
1
1
|
"use strict";
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
-
exports.
|
|
3
|
+
exports.stitch = stitch;
|
|
4
|
+
exports.dedupe = dedupe;
|
|
5
|
+
exports.revlist = revlist;
|
|
6
|
+
exports.calculateUTRs = calculateUTRs;
|
|
7
|
+
exports.calculateUTRs2 = calculateUTRs2;
|
|
8
|
+
exports.ellipses = ellipses;
|
|
4
9
|
function stitch(subfeats, sequence) {
|
|
5
10
|
return subfeats.map(sub => sequence.slice(sub.start, sub.end)).join('');
|
|
6
11
|
}
|
|
7
|
-
exports.stitch = stitch;
|
|
8
12
|
// filter items if they have the same "ID" or location
|
|
9
13
|
function getItemId(feat) {
|
|
10
14
|
return `${feat.start}-${feat.end}`;
|
|
@@ -13,7 +17,6 @@ function getItemId(feat) {
|
|
|
13
17
|
function dedupe(list) {
|
|
14
18
|
return list.filter((item, pos, ary) => !pos || getItemId(item) !== getItemId(ary[pos - 1]));
|
|
15
19
|
}
|
|
16
|
-
exports.dedupe = dedupe;
|
|
17
20
|
function revlist(list, seqlen) {
|
|
18
21
|
return list
|
|
19
22
|
.map(sub => ({
|
|
@@ -23,7 +26,6 @@ function revlist(list, seqlen) {
|
|
|
23
26
|
}))
|
|
24
27
|
.sort((a, b) => a.start - b.start);
|
|
25
28
|
}
|
|
26
|
-
exports.revlist = revlist;
|
|
27
29
|
function calculateUTRs(cds, exons) {
|
|
28
30
|
// checking length ensures the .at below are valid
|
|
29
31
|
if (!cds.length) {
|
|
@@ -45,7 +47,6 @@ function calculateUTRs(cds, exons) {
|
|
|
45
47
|
].map(elt => ({ ...elt, type: 'three_prime_UTR' }));
|
|
46
48
|
return [...fiveUTRs, ...threeUTRs];
|
|
47
49
|
}
|
|
48
|
-
exports.calculateUTRs = calculateUTRs;
|
|
49
50
|
// calculates UTRs using impliedUTRs logic, but there are no exon subfeatures
|
|
50
51
|
function calculateUTRs2(cds, parentFeat) {
|
|
51
52
|
if (!cds.length) {
|
|
@@ -60,8 +61,6 @@ function calculateUTRs2(cds, parentFeat) {
|
|
|
60
61
|
}));
|
|
61
62
|
return [...fiveUTRs, ...threeUTRs];
|
|
62
63
|
}
|
|
63
|
-
exports.calculateUTRs2 = calculateUTRs2;
|
|
64
64
|
function ellipses(slug) {
|
|
65
65
|
return slug.length > 20 ? `${slug.slice(0, 20)}...` : slug;
|
|
66
66
|
}
|
|
67
|
-
exports.ellipses = ellipses;
|
package/PluginLoader.js
CHANGED
|
@@ -3,7 +3,10 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
|
3
3
|
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
4
4
|
};
|
|
5
5
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
|
-
exports.
|
|
6
|
+
exports.isUMDPluginDefinition = isUMDPluginDefinition;
|
|
7
|
+
exports.isESMPluginDefinition = isESMPluginDefinition;
|
|
8
|
+
exports.isCJSPluginDefinition = isCJSPluginDefinition;
|
|
9
|
+
exports.pluginDescriptionString = pluginDescriptionString;
|
|
7
10
|
const load_script_1 = __importDefault(require("load-script"));
|
|
8
11
|
// locals
|
|
9
12
|
const Plugin_1 = __importDefault(require("./Plugin"));
|
|
@@ -15,12 +18,10 @@ function isUMDPluginDefinition(def) {
|
|
|
15
18
|
def.umdLoc !== undefined) &&
|
|
16
19
|
def.name !== undefined);
|
|
17
20
|
}
|
|
18
|
-
exports.isUMDPluginDefinition = isUMDPluginDefinition;
|
|
19
21
|
function isESMPluginDefinition(def) {
|
|
20
22
|
return (def.esmUrl !== undefined ||
|
|
21
23
|
def.esmLoc !== undefined);
|
|
22
24
|
}
|
|
23
|
-
exports.isESMPluginDefinition = isESMPluginDefinition;
|
|
24
25
|
function promisifiedLoadScript(src) {
|
|
25
26
|
return new Promise((resolve, reject) => {
|
|
26
27
|
(0, load_script_1.default)(src, (err, script) => {
|
|
@@ -48,7 +49,6 @@ async function loadScript(scriptUrl) {
|
|
|
48
49
|
function isCJSPluginDefinition(def) {
|
|
49
50
|
return def.cjsUrl !== undefined;
|
|
50
51
|
}
|
|
51
|
-
exports.isCJSPluginDefinition = isCJSPluginDefinition;
|
|
52
52
|
function pluginDescriptionString(pluginDefinition) {
|
|
53
53
|
var _a;
|
|
54
54
|
if (isUMDPluginDefinition(pluginDefinition)) {
|
|
@@ -63,7 +63,6 @@ function pluginDescriptionString(pluginDefinition) {
|
|
|
63
63
|
}
|
|
64
64
|
return 'unknown plugin';
|
|
65
65
|
}
|
|
66
|
-
exports.pluginDescriptionString = pluginDescriptionString;
|
|
67
66
|
function isInWebWorker() {
|
|
68
67
|
return Boolean('WorkerGlobalScope' in globalThis);
|
|
69
68
|
}
|
package/PluginManager.d.ts
CHANGED
|
@@ -1,4 +1,3 @@
|
|
|
1
|
-
/// <reference types="react" />
|
|
2
1
|
import { IAnyType, IAnyModelType } from 'mobx-state-tree';
|
|
3
2
|
import PluggableElementBase from './pluggableElementTypes/PluggableElementBase';
|
|
4
3
|
import RendererType from './pluggableElementTypes/renderers/RendererType';
|
|
@@ -71,8 +70,8 @@ export default class PluginManager {
|
|
|
71
70
|
[key: string]: (value: any, ...args: any[]) => any;
|
|
72
71
|
}) => void;
|
|
73
72
|
getFunction: (name: string) => (value: any, ...args: any[]) => any;
|
|
74
|
-
eval: (expression: string, context?: import("jexl/Expression").Context
|
|
75
|
-
evalSync: (expression: string, context?: import("jexl/Expression").Context
|
|
73
|
+
eval: (expression: string, context?: import("jexl/Expression").Context) => Promise<any>;
|
|
74
|
+
evalSync: (expression: string, context?: import("jexl/Expression").Context) => any;
|
|
76
75
|
compile: (expression: string) => import("jexl/Expression").default;
|
|
77
76
|
createExpression: (expression: string) => import("jexl/Expression").default;
|
|
78
77
|
removeOp: (operator: string) => void;
|
|
@@ -157,7 +156,7 @@ export default class PluginManager {
|
|
|
157
156
|
interRegionPaddingWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
|
|
158
157
|
minimumBlockWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
|
|
159
158
|
}, {
|
|
160
|
-
features: import("./util").Feature[]
|
|
159
|
+
features: undefined | import("./util").Feature[];
|
|
161
160
|
volatileWidth: number;
|
|
162
161
|
} & {
|
|
163
162
|
setDisplayedRegions(regions: import("./util").Region[]): void;
|
|
@@ -184,12 +183,12 @@ export default class PluginManager {
|
|
|
184
183
|
offset: number;
|
|
185
184
|
start: number;
|
|
186
185
|
end: number;
|
|
187
|
-
reversed?: boolean
|
|
186
|
+
reversed?: boolean;
|
|
188
187
|
};
|
|
189
188
|
bpToPx({ refName, coord, regionNumber, }: {
|
|
190
189
|
refName: string;
|
|
191
190
|
coord: number;
|
|
192
|
-
regionNumber?: number
|
|
191
|
+
regionNumber?: number;
|
|
193
192
|
}): number | undefined;
|
|
194
193
|
} & {
|
|
195
194
|
setFeatures(features: import("./util").Feature[]): void;
|
|
@@ -201,7 +200,7 @@ export default class PluginManager {
|
|
|
201
200
|
centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
|
|
202
201
|
scroll(distance: number): number;
|
|
203
202
|
} & {
|
|
204
|
-
moveTo(start?: import("./util/Base1DUtils").BpOffset
|
|
203
|
+
moveTo(start?: import("./util/Base1DUtils").BpOffset, end?: import("./util/Base1DUtils").BpOffset): void;
|
|
205
204
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
|
|
206
205
|
'@jbrowse/core/util/io': typeof import("./util/io");
|
|
207
206
|
'@jbrowse/core/util/mst-reflection': typeof import("./util/mst-reflection");
|
package/ReExports/modules.d.ts
CHANGED
|
@@ -65,7 +65,7 @@ declare const libs: {
|
|
|
65
65
|
interRegionPaddingWidth: mst.IOptionalIType<mst.ISimpleType<number>, [undefined]>;
|
|
66
66
|
minimumBlockWidth: mst.IOptionalIType<mst.ISimpleType<number>, [undefined]>;
|
|
67
67
|
}, {
|
|
68
|
-
features: coreUtil.Feature[]
|
|
68
|
+
features: undefined | coreUtil.Feature[];
|
|
69
69
|
volatileWidth: number;
|
|
70
70
|
} & {
|
|
71
71
|
setDisplayedRegions(regions: coreUtil.Region[]): void;
|
|
@@ -92,12 +92,12 @@ declare const libs: {
|
|
|
92
92
|
offset: number;
|
|
93
93
|
start: number;
|
|
94
94
|
end: number;
|
|
95
|
-
reversed?: boolean
|
|
95
|
+
reversed?: boolean;
|
|
96
96
|
};
|
|
97
97
|
bpToPx({ refName, coord, regionNumber, }: {
|
|
98
98
|
refName: string;
|
|
99
99
|
coord: number;
|
|
100
|
-
regionNumber?: number
|
|
100
|
+
regionNumber?: number;
|
|
101
101
|
}): number | undefined;
|
|
102
102
|
} & {
|
|
103
103
|
setFeatures(features: coreUtil.Feature[]): void;
|
|
@@ -109,7 +109,7 @@ declare const libs: {
|
|
|
109
109
|
centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
|
|
110
110
|
scroll(distance: number): number;
|
|
111
111
|
} & {
|
|
112
|
-
moveTo(start?: import("../util/Base1DUtils").BpOffset
|
|
112
|
+
moveTo(start?: import("../util/Base1DUtils").BpOffset, end?: import("../util/Base1DUtils").BpOffset): void;
|
|
113
113
|
}, mst._NotCustomized, mst._NotCustomized>;
|
|
114
114
|
'@jbrowse/core/util/io': typeof coreIo;
|
|
115
115
|
'@jbrowse/core/util/mst-reflection': typeof coreMstReflection;
|
|
@@ -137,12 +137,12 @@ declare const libs: {
|
|
|
137
137
|
makeStyles: <Params = void, RuleNameSubsetReferencableInNestedSelectors extends string = never>(params?: {
|
|
138
138
|
name?: string | Record<string, unknown> | undefined;
|
|
139
139
|
uniqId?: string | undefined;
|
|
140
|
-
} | undefined) => <RuleName extends string>(cssObjectByRuleNameOrGetCssObjectByRuleName: Record<RuleName, import("tss-react").CSSObject> | ((theme:
|
|
140
|
+
} | undefined) => <RuleName extends string>(cssObjectByRuleNameOrGetCssObjectByRuleName: Record<RuleName, import("tss-react").CSSObject> | ((theme: import("@mui/material/styles").Theme, params: Params, classes: Record<RuleNameSubsetReferencableInNestedSelectors, string>) => Record<RuleNameSubsetReferencableInNestedSelectors | RuleName, import("tss-react").CSSObject>)) => (params: Params, muiStyleOverridesParams?: {
|
|
141
141
|
props: Record<string, unknown>;
|
|
142
142
|
ownerState?: Record<string, unknown> | undefined;
|
|
143
143
|
} | undefined) => {
|
|
144
144
|
classes: Record<RuleName, string>;
|
|
145
|
-
theme:
|
|
145
|
+
theme: import("@mui/material/styles").Theme;
|
|
146
146
|
css: import("tss-react").Css;
|
|
147
147
|
cx: import("tss-react").Cx;
|
|
148
148
|
};
|
|
@@ -16,13 +16,17 @@ export default class TextSearchManager {
|
|
|
16
16
|
relevantAdapters(searchScope: SearchScope): ({
|
|
17
17
|
[x: string]: any;
|
|
18
18
|
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
19
|
-
setSubschema(slotName: string, data: unknown):
|
|
19
|
+
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
20
|
+
[x: string]: any;
|
|
21
|
+
} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("../configuration").AnyConfigurationSchemaType>);
|
|
20
22
|
} & import("mobx-state-tree").IStateTreeNode<import("../configuration").AnyConfigurationSchemaType>)[];
|
|
21
23
|
getAdaptersWithAssembly(assemblyName: string, confs: AnyConfigurationModel[]): AnyConfigurationModel[];
|
|
22
24
|
getTrackAdaptersWithAssembly(assemblyName: string, confs: AnyConfigurationModel[]): ({
|
|
23
25
|
[x: string]: any;
|
|
24
26
|
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
25
|
-
setSubschema(slotName: string, data: unknown):
|
|
27
|
+
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
28
|
+
[x: string]: any;
|
|
29
|
+
} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("../configuration").AnyConfigurationSchemaType>);
|
|
26
30
|
} & import("mobx-state-tree").IStateTreeNode<import("../configuration").AnyConfigurationSchemaType>)[];
|
|
27
31
|
/**
|
|
28
32
|
* Returns list of relevant results given a search query and options
|
|
@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
|
3
3
|
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
4
4
|
};
|
|
5
5
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
|
+
exports.default = assemblyFactory;
|
|
6
7
|
const mobx_state_tree_1 = require("mobx-state-tree");
|
|
7
8
|
const abortable_promise_cache_1 = __importDefault(require("abortable-promise-cache"));
|
|
8
9
|
// locals
|
|
@@ -375,7 +376,6 @@ function assemblyFactory(assemblyConfigType, pm) {
|
|
|
375
376
|
},
|
|
376
377
|
}));
|
|
377
378
|
}
|
|
378
|
-
exports.default = assemblyFactory;
|
|
379
379
|
async function getRefNameAliases(config, pm, signal) {
|
|
380
380
|
const type = pm.getAdapterType(config.type);
|
|
381
381
|
const CLASS = await type.getAdapterClass();
|