@jbrowse/core 2.12.0 → 2.12.1

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Files changed (91) hide show
  1. package/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +1 -1
  2. package/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +1 -1
  3. package/BaseFeatureWidget/BaseFeatureDetail/BasicValue.js +1 -1
  4. package/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.js +1 -1
  5. package/BaseFeatureWidget/BaseFeatureDetail/FieldName.js +1 -1
  6. package/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +1 -1
  7. package/BaseFeatureWidget/BaseFeatureDetail/UriField.js +1 -1
  8. package/BaseFeatureWidget/BaseFeatureDetail/index.js +3 -3
  9. package/BaseFeatureWidget/BaseFeatureDetail/util.js +4 -5
  10. package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.js +1 -1
  11. package/BaseFeatureWidget/SequenceFeatureDetails/hooks.js +1 -2
  12. package/BaseFeatureWidget/SequenceFeatureDetails/model.d.ts +1 -1
  13. package/BaseFeatureWidget/SequenceFeatureDetails/model.js +1 -2
  14. package/BaseFeatureWidget/SequenceFeatureDetails/util.js +2 -2
  15. package/BaseFeatureWidget/stateModelFactory.d.ts +2 -6
  16. package/BaseFeatureWidget/stateModelFactory.js +1 -2
  17. package/BaseFeatureWidget/util.d.ts +5 -5
  18. package/BaseFeatureWidget/util.js +6 -7
  19. package/PluginLoader.js +4 -5
  20. package/PluginManager.d.ts +6 -7
  21. package/ReExports/modules.d.ts +6 -6
  22. package/TextSearch/TextSearchManager.d.ts +6 -2
  23. package/assemblyManager/assembly.js +1 -1
  24. package/assemblyManager/assemblyManager.d.ts +9 -82
  25. package/configuration/configurationSchema.d.ts +7 -1
  26. package/configuration/configurationSchema.js +2 -3
  27. package/configuration/configurationSlot.js +1 -1
  28. package/configuration/util.d.ts +1 -1
  29. package/configuration/util.js +7 -8
  30. package/data_adapters/BaseAdapter/util.js +5 -6
  31. package/data_adapters/CytobandAdapter/CytobandAdapter.d.ts +0 -1
  32. package/data_adapters/CytobandAdapter/CytobandAdapter.js +1 -2
  33. package/data_adapters/CytobandAdapter/index.js +1 -1
  34. package/data_adapters/dataAdapterCache.js +4 -5
  35. package/package.json +2 -2
  36. package/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts +1 -3
  37. package/pluggableElementTypes/models/BaseDisplayModel.d.ts +3 -3
  38. package/pluggableElementTypes/models/BaseTrackModel.d.ts +6 -2
  39. package/pluggableElementTypes/models/BaseTrackModel.js +2 -3
  40. package/pluggableElementTypes/models/InternetAccountModel.d.ts +13 -13
  41. package/pluggableElementTypes/models/baseTrackConfig.js +1 -2
  42. package/rpc/BaseRpcDriver.js +1 -2
  43. package/rpc/methods/util.js +1 -2
  44. package/rpc/remoteAbortSignals.js +5 -6
  45. package/stories/examples/WithSequencePanel.js +5 -6
  46. package/tsconfig.build.tsbuildinfo +1 -1
  47. package/ui/ColorPicker.js +3 -3
  48. package/ui/ErrorMessageStackTraceDialog.js +1 -1
  49. package/ui/FactoryResetDialog.js +1 -1
  50. package/ui/FatalErrorDialog.js +1 -1
  51. package/ui/Icons.js +9 -10
  52. package/ui/LoadingEllipses.js +1 -1
  53. package/ui/Logo.js +2 -3
  54. package/ui/Menu.js +1 -2
  55. package/ui/RedErrorMessageBox.js +1 -1
  56. package/ui/SanitizedHTML.js +1 -1
  57. package/ui/SnackbarModel.js +1 -1
  58. package/ui/theme.js +3 -3
  59. package/util/Base1DUtils.js +4 -5
  60. package/util/Base1DViewModel.d.ts +2 -2
  61. package/util/aborting.js +5 -6
  62. package/util/analytics.js +3 -4
  63. package/util/blobToDataURL.js +1 -2
  64. package/util/calculateDynamicBlocks.js +1 -1
  65. package/util/calculateStaticBlocks.js +1 -1
  66. package/util/color/cssColorsLevel4.js +2 -3
  67. package/util/color/index.js +4 -4
  68. package/util/dedupe.js +1 -2
  69. package/util/formatFastaStrings.js +2 -3
  70. package/util/idMaker.js +1 -1
  71. package/util/index.d.ts +2 -2
  72. package/util/index.js +70 -71
  73. package/util/io/RemoteFileWithRangeCache.d.ts +0 -1
  74. package/util/io/RemoteFileWithRangeCache.js +2 -2
  75. package/util/io/index.js +4 -4
  76. package/util/jexl.js +1 -1
  77. package/util/jexlStrings.js +1 -2
  78. package/util/map-obj.js +1 -1
  79. package/util/mst-reflection.js +6 -7
  80. package/util/offscreenCanvasPonyfill.js +2 -2
  81. package/util/offscreenCanvasUtils.js +3 -4
  82. package/util/range.js +3 -4
  83. package/util/rxjs.js +1 -2
  84. package/util/simpleFeature.js +1 -2
  85. package/util/stats.js +5 -6
  86. package/util/tracks.js +17 -17
  87. package/util/types/index.js +23 -23
  88. package/util/types/mst.d.ts +0 -1
  89. package/util/useMeasure.d.ts +2 -3
  90. package/util/useMeasure.js +1 -1
  91. package/util/when.js +2 -3
package/stories/examples/WithSequencePanel.js CHANGED
@@ -3,7 +3,11 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
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  return (mod && mod.__esModule) ? mod : { "default": mod };
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
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- exports.GeneCollapsedIntronNoCoords = exports.GeneCollapsedIntronCoords = exports.GeneCoordsGenomic = exports.CDSCoords = exports.CDSNoCoords = void 0;
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+ exports.CDSNoCoords = CDSNoCoords;
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+ exports.CDSCoords = CDSCoords;
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+ exports.GeneCoordsGenomic = GeneCoordsGenomic;
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+ exports.GeneCollapsedIntronCoords = GeneCollapsedIntronCoords;
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+ exports.GeneCollapsedIntronNoCoords = GeneCollapsedIntronNoCoords;
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  const react_1 = __importDefault(require("react"));
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  const SequencePanel_1 = __importDefault(require(".././../BaseFeatureWidget/SequenceFeatureDetails/SequencePanel"));
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  const model_1 = require(".././../BaseFeatureWidget/SequenceFeatureDetails/model");
@@ -14,30 +18,25 @@ function GeneCollapsedIntronCoords() {
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  model.setMode('gene_collapsed_intron');
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  return react_1.default.createElement(SequencePanel_1.default, { model: model, sequence: util_1.sequence, feature: util_1.feature });
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  }
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- exports.GeneCollapsedIntronCoords = GeneCollapsedIntronCoords;
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  function GeneCollapsedIntronNoCoords() {
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  const model = (0, model_1.SequenceFeatureDetailsF)().create();
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  model.setMode('gene_collapsed_intron');
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  return react_1.default.createElement(SequencePanel_1.default, { model: model, sequence: util_1.sequence, feature: util_1.feature });
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  }
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- exports.GeneCollapsedIntronNoCoords = GeneCollapsedIntronNoCoords;
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  function CDSCoords() {
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  const model = (0, model_1.SequenceFeatureDetailsF)().create();
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  model.setShowCoordinates('relative');
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  model.setMode('cds');
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  return react_1.default.createElement(SequencePanel_1.default, { model: model, sequence: util_1.sequence, feature: util_1.feature });
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  }
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- exports.CDSCoords = CDSCoords;
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  function GeneCoordsGenomic() {
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  const model = (0, model_1.SequenceFeatureDetailsF)().create();
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  model.setShowCoordinates('genomic');
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  model.setMode('gene');
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  return react_1.default.createElement(SequencePanel_1.default, { model: model, sequence: util_1.sequence, feature: util_1.feature });
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  }
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- exports.GeneCoordsGenomic = GeneCoordsGenomic;
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  function CDSNoCoords() {
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  const model = (0, model_1.SequenceFeatureDetailsF)().create();
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  model.setMode('cds');
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  return react_1.default.createElement(SequencePanel_1.default, { model: model, sequence: util_1.sequence, feature: util_1.feature });
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  }
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- exports.CDSNoCoords = CDSNoCoords;