@jbrowse/core 2.11.1 → 2.12.0

package/stories/examples/util.js

@@ -0,0 +1,235 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.sequence = exports.feature = void 0;
+exports.feature = {
+    strand: 1,
+    source: 'example',
+    type: 'mRNA',
+    start: 1049,
+    end: 9000,
+    phase: 0,
+    derived_features: [],
+    refName: 'ctgA',
+    id: 'EDEN.1',
+    parent: 'EDEN',
+    name: 'EDEN.1',
+    note: 'Eden splice form 1',
+    index: '1',
+    subfeatures: [
+        {
+            strand: 1,
+            source: 'example',
+            type: 'five_prime_UTR',
+            start: 1049,
+            end: 1200,
+            phase: 0,
+            derived_features: [],
+            refName: 'ctgA',
+            parent: 'EDEN.1',
+            uniqueId: '753811506-offset-791705-0-0',
+            parentId: '753811506-offset-791705-0',
+        },
+        {
+            strand: 1,
+            source: 'example',
+            type: 'CDS',
+            start: 1200,
+            end: 1500,
+            phase: 0,
+            derived_features: [],
+            refName: 'ctgA',
+            parent: 'EDEN.1',
+            uniqueId: '753811506-offset-791705-0-1',
+            parentId: '753811506-offset-791705-0',
+        },
+        {
+            strand: 1,
+            source: 'example',
+            type: 'CDS',
+            start: 2999,
+            end: 3902,
+            phase: 0,
+            derived_features: [],
+            refName: 'ctgA',
+            parent: 'EDEN.1',
+            uniqueId: '753811506-offset-791705-0-2',
+            parentId: '753811506-offset-791705-0',
+        },
+        {
+            strand: 1,
+            source: 'example',
+            type: 'CDS',
+            start: 4999,
+            end: 5500,
+            phase: 0,
+            derived_features: [],
+            refName: 'ctgA',
+            parent: 'EDEN.1',
+            uniqueId: '753811506-offset-791705-0-3',
+            parentId: '753811506-offset-791705-0',
+        },
+        {
+            strand: 1,
+            source: 'example',
+            type: 'CDS',
+            start: 6999,
+            end: 7608,
+            phase: 0,
+            derived_features: [],
+            refName: 'ctgA',
+            parent: 'EDEN.1',
+            uniqueId: '753811506-offset-791705-0-4',
+            parentId: '753811506-offset-791705-0',
+        },
+        {
+            strand: 1,
+            source: 'example',
+            type: 'three_prime_UTR',
+            start: 7608,
+            end: 9000,
+            phase: 0,
+            derived_features: [],
+            refName: 'ctgA',
+            parent: 'EDEN.1',
+            uniqueId: '753811506-offset-791705-0-5',
+            parentId: '753811506-offset-791705-0',
+        },
+    ],
+    uniqueId: '753811506-offset-791705-0',
+    parentId: '753811506-offset-791705',
+};
+exports.sequence = {
+    seq: `tccatcggcaataggggttatcagtactaccaagaagattgtgaagatattaacagcatt
+gaaaaaagttcggactgggcatgaaacgtgtgtcagagttagagtccttgagggactgaa
+tgggtttgtcccaggcccaagcttgaggtggatgtcacctcgggtactgcctctattaca
+gaggtatcttaatggcgcatccagccttgtggctgggtctacgtacgcgtgggcaccata
+cgtatgttggcaggaaaggtcaatcatgcttgtttcctcgtcgcagaaacgttcacacta
+ttggctcgcgggatcgaacgggcctgattatttttccagctcctgcgttcctatcacgcc
+aactgtcgctaataaaatgttatatagagataacccattgctatgcaaggatggagaaac
+cgcttcacaacaccctagaattacttcagcactaacatctaagataccgggaaaaccgta
+ggtgccacttggttttgagggcaatgcctcttgcactggcgattcgtggagtaaccttgc
+taccgatttccaccttttctaggtatgattacatgcgatcgccattgtcagtcgtcgtac
+gaaatccaggaaggaattcgaatacatgaccgaaagctatggcatcataagcgtggctct
+ttactaaggacacgtgtagtcggctgatttcgcgcagaacttcgctcaccggacagtgac
+tgctgtccgaacttgggggcagcgtagattctagctagagaccgcagcgaaaatgccact
+cgctaggtggctatggacgtccagctataggcccccacattcgtatgtatactccggtaa
+ttgagtctacctttcgaaagatcaaagttcacaaaccttctctcacgttaacatagatgc
+tcgcacatagctagtccggtgataaagcggccgtgcatgcgagtatttagcgcacggaac
+agatattaggctgcgaaataccctcatatgctacagcgcaggtaacagacggttgatctc
+cccgtagaattccctcaaggccggatcgttctcatgagtagcctttgtctgacatttcct
+ctcaatagattgcagactcctgtgtcgtgggaaaacttcgcggaatcgctgtcgttacat
+aaatctaaacagtgcagtccaagctatttactaccacgtatcataatgaacatctctttg
+tgaaatacgccggtacgccgagagatcgcccacattgcgtgtcaccaagacccagtgtct
+attgggcgcgctggttatagtatgcggaggcacccgatgtgctgctaatcactacaaact
+cgacaccaagaggcgaccgcgtgcgggagggctagaacgcgagagccacgtcaacgtggt
+ggtaccgctcctgatgatacgagcactgtgctggcaccgctgccctatgtccagctaaca
+ggtgtcacataatatcgcatctatagttgagtatcttatcgctagcgttacttgtgagtt
+ctcgggtagaatcgtcgtagcattctagtccttagcgtaagcaacgatatcgccgatatt
+ataggggcaataggtctcacccaccacgggtgtatatttaacgccctaagtagttaacgg
+agactattaaacaattatgcacgtgaaagattagggtactgcacacgtgtcacgttgacg
+atgtaaacaccataaaggttgttctgtgatgcgatgcccatacctgcggtgcaacgtcct
+aaacttatgcggatcaccttctaattcagccgacgttgagaacgccagctatactctgtg
+agtacaaggtgaaagccccagatcaaaatattggagtcttgtccgtagctcttgggtgga
+gagtgtgaccacgtttatcccttaatactgagactcttctcgttccacgccccggacatt
+cgcgatacagcctagtttgataggtggctacaagggctctatccgaatagcacaaaactc
+agtcctagtgcgtataggtcgtgctctgcggttatacgctccacagaagaaagtacccac
+tgcagtttgtcggtgggacttagcaaaacctgtaaccaaaaccgcacatggactctgttt
+tggtggcgtggagtgtgcccgccgcctttatgctgggtcaaaatactatatgatttgttg
+tggtcgggcgcgacattggctcttatggtttataactattattcggtgcacagaaccgac
+ttatgccccgattttgcacctcccgagagaaatggtactagtcattgtctcggggtttta
+caactcaaggataatctgccagcggtaccccgaaaaatcccatcccgaacggctggtacc
+tatgctggagaccgaaatggagccagtgctatgcaaaccctcgctctttctatttggccc
+gaccagctgcgagagtcattcgacatacattgcgatggctggttcatctctctgcttcgg
+attccgatcctgctgcctatggccacaacacgaaagagatcttggatacgtcctcaccat
+agtccaacggacaaatatggaggtgtacgcgcacggatacgagtacgacgggccgcccaa
+tgctggtccttcgtgttatactgtttacttgcctccggtaagagtgtacagcttgtaccc
+acgcggtggaggaccttacgcgtcgtccgcaggtgtggagatttcgctacctgttgcatt
+ggggcctcgccttacgtttttttcgacggaggcccgacccgccaggccagaccctcatca
+ttgggatttttactgccttggacggcagattctgatgctggtaacgcgcttggcacacac
+cctggtcgtaattacgtactatcacctctattttaccaggggcgggccccgcctcaacga
+tcggtagtctcgttagaacagttgcttatactccgttagcactcacaactcggagaatga
+gcttacacagtccgtaatagtctccacagcttcccctggaaggttcgtacaggggccctg
+gggtctaatgtgctaccgcctaacttcgttagtgtaaggtctcgtgtgcacctccaataa
+cgctgcatttttgtatagaactcctttataggcctgactcttcggaacagcccactaatt
+gacgtgcacgatgctgcatatacccttctcaatgacgcataccggtgactaaatcctgtg
+gctggttgacactttgcataacccaccacgaaaacgcggtttgcacgtggttggaagcga
+gtaccggttaagggaagttacgtaaacccaacatagtgagcgatgcttaaaacactgcat
+gcgaacaacgaccggaacgagagcctaatagaaccaaatggataggtggttacgaaatcc
+gcgcacaagtgtcgtgccactctcgtaaagaatgattgcttgcttatctatgagaaacct
+aataggcacgcacgtgtcgccagggaaaaaccaccatccgacaagacgctgaaaatcgag
+atagatgcagcccgcgcgtactttaagcacgatagccatcttgagcgcgacgattcagct
+tacggagattacttctcaaagcggacacctcgacgctgaagctctctatcgatgcacttg
+catgtccatctacggcttgagcgaaccatgcttaacgcttggatgacgttgttagtcgga
+ttcgatcgtaccatactgtcctatccatcataacttcccgaattaaaactcattttctac
+cctcatttgtttcattggcgcatatgagcgccccatgggcgctgatcgacacaggcttgt
+agcgcacggctcgtcttgcagtagataaccatagtctttacgtcgcatatattaatatat
+cctcagacttccactgcggtattttggatcgtggcgtctgggacagtcacactctttaac
+gggagcgcgttcaatgtctgagtccatccgtgcagttcggtgcgattttattcttccctg
+catcttccggattccttcttcttgtcggagaattcgccgctcgatcaaactcatcattgg
+tacttattgaccgtttcatgctattacaccggtacactgatgataacgctgcggttttat
+cccccccaatacgcgcacacacgcttctttcggtgcgtcctgtcgtacccctattgcgca
+tcatggcactccagccgagcaatgctttggacaggtgtaaccaagctggatctagcgtgg
+gttcgacacagctcggttcgtataaccacacgcatgaactgcgagtgcctcgccccagcg
+ccgctgtctacttgctgtttagaggaagaagcaacagcttgcacccaatccgcatatctg
+catataggtggccgttcctccgtggcgcgccgctacgttgtagcgcacggatcaaaagcg
+ctgtgttactatacactggttcggagacggttcatgacgagcgcgctatatgtcggcatc
+tgcgccccatgagcggccgctgtccggcggcacgaataatatagtgcaagaaaaaccgaa
+gactacggttatatatgatggaacggccctcacagcattctaacaggtttgacaaactta
+ataaatgatgggccgcgcctgctgtgaatcccggacggtttggccggaaatacctaggca
+gtctttggaaaagcttttcctagatcaccatatcgttgtcagtggccaaggtttcgttaa
+ctctcggcgtacccagtatcggcgcaataggcctttgatcaacccttggaagattagtcg
+atcgtaacttcctacatcccggtgaaaggctttaattctaagtcttcgccacaaacgctt
+caggagcgtcgagttctatcactttcgaggtactgccacttactatacaccggtacactt
+gttaagcaagtgtttgcggatgtggttaaattttgatggcagatttctgggtgttttagc
+tatagctgtatcctcgaggtcgtcgtttaaccgctcctgttgctagatcatatgtatcgt
+tgttcgagacgctagtagtcgctcctaccgaatcttacaggttcgatctctgctcggctt
+ttgccgcgggccggtgcttgtgctataattataatgataagggcagtggccgcacaactg
+cagattactgacacttgagtgagaactaagccttgaagcatagtgttgaatgttgtagaa
+aagtatactgtgacaaaaacagggcctggtgtcaagtgtcctcagtgatctggatatcat
+cacgccttgttagcaggatttacccgcatagtaatggccggactttatattgccctgctg
+cgctagctagtactgcgggggctctcttccccctattgatattccgggcagaatgcgcgg
+gtagtcagcattcatgtcaggcttctatcaacgtctcattcacccttggagtgtgaccta
+cgtgttagaggcaatgtagcccgagagcccgttcaaagacaaactcccgaattaaacaga
+caccggttatgggagtgtgagtagtgacttccgaccagtgtttggtttcagcctgtcggt
+taacctcgcagggctaggagaatgagctgctagtaggtgattaccgaagtctccccagaa
+agggaacagtcttatagagtagagaatgtcaaatagcgttattgagttctgtctactgca
+ctaccaagagcatgcccaccagagatgcgtcgcagtcgtagcgtagacgtcgtaatgacc
+caggtggcgttcggcctattcgcgtcggacgcgcgcgctactacaacgaagggttctgaa
+agtgcatgttcacactgaaattctaagtgttagtaaacaaacgcgtgtattccagggtcg
+tgtgtgacattatggctgtctgcgcccctcaatgatcatcaagacgttcaattgtatgtt
+aacgtagatatcaggtttagttatccgtatactttttacgccgcgcgcttggaacagatt
+ctcctaacagccctcgcggtttcaaaaagaaccaaagtctataccatccttgttcccaat
+tctgcctggttgcggagaaaagaccgcctccatacgtacccgactcggtattggtaagtg
+gggaagcagtcgaacgcatatttcttggttatatcacaggccacgttctatatcggaagt
+ggccggattacgatttgacgttctatccccgagagcgcattcttgtttgttactactacc
+acgcgggcgcttcttattcccagaccagagggaatgtgcggaagctttttccacagattg
+gcggaactccagcgtgcttagtgcaggcggagaacgtccgttcagtggtgcgtgctttat
+ttttcaatctgacccgacctgcgctcaagggttgcaagttgttgtgcgcccgagtaatag
+gcgactcgtcgcaatgggtctggtacattgcattttcatcggtacggcgcttcataaagt
+gcggcaaatttctcaccccagtactcatgtttatagggtatcaggacccgaagcttctct
+gttccaaagaaatgtactgtttggctcccctgtccatattggaggtagatcacttgtgga
+ttatgcaatgaatgaatgaaagtttggtgctccccaccggggcgctctcaaagagagtga
+gctaaatttgaacatttaaattgctattccaacccggagtcctgaccggaacagtaatga
+aacttcaaccatgccggacagactagaagaagggaaagttgcttgtatatgggagtaaaa
+atgatgttggtgccgtaatggtgccggaagtgactatagagcatgtcgtgacgcaccggt
+aggcagtgctataatcgtatgtccttcaggcgccgccggacctacgaagctgaaattaga
+caccggcacactagccccgtcagcgacggtgcgcggccgctgccctgcagcgaatggggc
+taacacgcataaaacgcccgcataaccactcgagctacgggaattcactcaggctgttgc
+ttcgacgtgtagtctcattacataatcataatacctccaagaccaacggctgctcatgac
+tctcttaccttgttagggacatttcggcactagggaagagctgaggactttgaaaacgtc
+gataaaaccatcgcgggaactagctgcgttagaactccatattttacgggtcgcaagctt
+gaggtcctgtcccggcagctgcaagtgctacggcaggaggggatctacctaacgtgcagt
+aacgagcccctgcccgtaatgaggcgtactcgtctctaatcgtcagtaagttactatgtc
+cgaggacgcctctacgagttgaactctggctaggcccacctgtccgcgccctgctcgggt
+accccatctgcttatccaacttcacctcgccttacggaatctctggttgccagtcatccg
+atggtcattaagcagcgtggtacatcgtagccaatacttcagggcgccagccatattccc
+agccaagcggctgcataattacagcgcctggcacgactaatcgatcccacaagcctggta
+gatgacccttagccctaaagcgccctctgacctatctgcacgtgatacttgattatttgt
+aatgagcggacagggtagatgactaatatacagggtcgtctaggtttgcacaatgcagac
+atcatccgcgcaaggcccggacggctgtactcacacagctagctccatctccctcagcag
+cactaagattcccacgtgaccagggcgacgggcctcagccaaacgtatccttgatatcta
+cttaagtcaaggttgactccgaaccctatgggtcggtgccgttaacagggagtctatatc
+tcggcgttccattgcttgtttcaaactcctgctataaggtgaaagcgctggagggcatag
+tttatgcccaaagttgcgcgtagatccgtcgggatatgtgctataataaggactgctcga
+ggtaggcggtaacggctcccgccttcagtag`.replaceAll('\n', ''),
+};