@jbrowse/core 2.10.3 → 2.11.1

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Files changed (72) hide show
  1. package/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +1 -1
  2. package/BaseFeatureWidget/BaseFeatureDetail/index.js +10 -2
  3. package/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.d.ts +7 -2
  4. package/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.js +80 -86
  5. package/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.d.ts +8 -0
  6. package/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.js +67 -0
  7. package/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.d.ts +5 -3
  8. package/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.js +7 -7
  9. package/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.d.ts +7 -0
  10. package/BaseFeatureWidget/SequenceFeatureDetails/{SequenceFeatureSettingsDialog.js → dialogs/SettingsDialog.js} +20 -10
  11. package/BaseFeatureWidget/SequenceFeatureDetails/hooks.js +2 -8
  12. package/BaseFeatureWidget/SequenceFeatureDetails/index.d.ts +1 -3
  13. package/BaseFeatureWidget/SequenceFeatureDetails/index.js +3 -67
  14. package/BaseFeatureWidget/SequenceFeatureDetails/model.d.ts +14 -0
  15. package/BaseFeatureWidget/SequenceFeatureDetails/model.js +40 -0
  16. package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.d.ts +15 -0
  17. package/BaseFeatureWidget/SequenceFeatureDetails/{CDNASequence.js → seqtypes/CDNASequence.js} +17 -8
  18. package/BaseFeatureWidget/SequenceFeatureDetails/{CDSSequence.d.ts → seqtypes/CDSSequence.d.ts} +1 -1
  19. package/BaseFeatureWidget/SequenceFeatureDetails/{CDSSequence.js → seqtypes/CDSSequence.js} +2 -2
  20. package/BaseFeatureWidget/SequenceFeatureDetails/{GenomicSequence.js → seqtypes/GenomicSequence.js} +1 -1
  21. package/BaseFeatureWidget/SequenceFeatureDetails/{ProteinSequence.d.ts → seqtypes/ProteinSequence.d.ts} +1 -1
  22. package/BaseFeatureWidget/SequenceFeatureDetails/{ProteinSequence.js → seqtypes/ProteinSequence.js} +2 -2
  23. package/BaseFeatureWidget/stateModelFactory.d.ts +32 -0
  24. package/BaseFeatureWidget/stateModelFactory.js +5 -0
  25. package/BaseFeatureWidget/types.d.ts +2 -7
  26. package/BaseFeatureWidget/util.d.ts +4 -2
  27. package/PluginLoader.d.ts +1 -1
  28. package/PluginLoader.js +1 -0
  29. package/PluginManager.d.ts +14 -10
  30. package/PluginManager.js +8 -3
  31. package/ReExports/modules.d.ts +9 -3
  32. package/ReExports/modules.js +16 -5
  33. package/data_adapters/CytobandAdapter/index.d.ts +1 -2
  34. package/data_adapters/CytobandAdapter/index.js +3 -2
  35. package/package.json +3 -3
  36. package/pluggableElementTypes/models/BaseTrackModel.d.ts +1 -0
  37. package/pluggableElementTypes/models/BaseTrackModel.js +2 -1
  38. package/pluggableElementTypes/models/InternetAccountModel.d.ts +1 -0
  39. package/rpc/BaseRpcDriver.js +1 -0
  40. package/tsconfig.build.tsbuildinfo +1 -1
  41. package/ui/AssemblySelector.d.ts +5 -5
  42. package/ui/CascadingMenuButton.d.ts +6 -6
  43. package/ui/Dialog.js +1 -1
  44. package/ui/ErrorMessage.d.ts +2 -1
  45. package/ui/ErrorMessage.js +16 -3
  46. package/ui/ErrorMessageStackTraceDialog.d.ts +3 -2
  47. package/ui/ErrorMessageStackTraceDialog.js +50 -23
  48. package/ui/FileSelector/FileSelector.d.ts +5 -5
  49. package/ui/FileSelector/UrlChooser.d.ts +2 -2
  50. package/ui/MenuButton.d.ts +5 -5
  51. package/ui/SnackbarModel.d.ts +21 -30
  52. package/ui/SnackbarModel.js +87 -50
  53. package/ui/index.d.ts +0 -1
  54. package/ui/index.js +1 -3
  55. package/ui/theme.d.ts +38 -0
  56. package/ui/theme.js +121 -104
  57. package/util/Base1DViewModel.d.ts +1 -1
  58. package/util/index.d.ts +11 -1
  59. package/util/index.js +27 -6
  60. package/util/io/RemoteFileWithRangeCache.js +14 -31
  61. package/util/jexl.d.ts +1 -1
  62. package/util/jexl.js +3 -2
  63. package/util/offscreenCanvasUtils.js +2 -2
  64. package/util/simpleFeature.d.ts +4 -0
  65. package/util/types/index.d.ts +2 -1
  66. package/BaseFeatureWidget/SequenceFeatureDetails/CDNASequence.d.ts +0 -13
  67. package/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureSettingsDialog.d.ts +0 -9
  68. package/ui/Tooltip.d.ts +0 -11
  69. package/ui/Tooltip.js +0 -54
  70. /package/BaseFeatureWidget/SequenceFeatureDetails/{SequenceHelpDialog.d.ts → dialogs/HelpDialog.d.ts} +0 -0
  71. /package/BaseFeatureWidget/SequenceFeatureDetails/{SequenceHelpDialog.js → dialogs/HelpDialog.js} +0 -0
  72. /package/BaseFeatureWidget/SequenceFeatureDetails/{GenomicSequence.d.ts → seqtypes/GenomicSequence.d.ts} +0 -0
package/ui/Tooltip.d.ts DELETED
@@ -1,11 +0,0 @@
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- import React from 'react';
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- import { Feature } from '../util';
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- import { AnyConfigurationModel } from '../configuration';
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- declare const Tooltip: ({ offsetX, offsetY, configuration, feature, timeout, }: {
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- offsetX: number;
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- offsetY: number;
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- configuration: AnyConfigurationModel;
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- feature?: Feature | undefined;
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- timeout?: number | undefined;
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- }) => React.JSX.Element | null;
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- export default Tooltip;
package/ui/Tooltip.js DELETED
@@ -1,54 +0,0 @@
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- "use strict";
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- var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
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- if (k2 === undefined) k2 = k;
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- var desc = Object.getOwnPropertyDescriptor(m, k);
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- if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
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- desc = { enumerable: true, get: function() { return m[k]; } };
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- }
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- Object.defineProperty(o, k2, desc);
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- }) : (function(o, m, k, k2) {
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- if (k2 === undefined) k2 = k;
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- o[k2] = m[k];
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- }));
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- var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
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- Object.defineProperty(o, "default", { enumerable: true, value: v });
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- }) : function(o, v) {
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- o["default"] = v;
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- });
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- var __importStar = (this && this.__importStar) || function (mod) {
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- if (mod && mod.__esModule) return mod;
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- var result = {};
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- if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
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- __setModuleDefault(result, mod);
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- return result;
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- };
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- Object.defineProperty(exports, "__esModule", { value: true });
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- const react_1 = __importStar(require("react"));
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- const mui_1 = require("tss-react/mui");
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- const mobx_react_1 = require("mobx-react");
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- const configuration_1 = require("../configuration");
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- const useStyles = (0, mui_1.makeStyles)()({
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- hoverLabel: {
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- border: '1px solid black',
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- position: 'absolute',
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- background: '#fffa',
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- pointerEvents: 'none',
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- zIndex: 10000,
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- },
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- });
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- const Tooltip = (0, mobx_react_1.observer)(function ({ offsetX, offsetY, configuration, feature, timeout = 300, }) {
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- const { classes } = useStyles();
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- const [shown, setShown] = (0, react_1.useState)(false);
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- (0, react_1.useEffect)(() => {
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- // only show the loading message after short timeout to prevent excessive
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- // flickering
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- const handle = setTimeout(() => setShown(true), timeout);
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- return () => clearTimeout(handle);
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- });
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- if (feature && shown) {
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- const text = (0, configuration_1.readConfObject)(configuration, 'mouseover', { feature });
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- return (react_1.default.createElement("div", { className: classes.hoverLabel, style: { left: offsetX, top: offsetY } }, text));
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- }
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- return null;
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- });
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- exports.default = Tooltip;