@jbrowse/core 2.1.0 → 2.1.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
package/ui/SanitizedHTML.js
CHANGED
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@@ -58,7 +58,7 @@ function SanitizedHTML({ html }) {
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// see https://github.com/cure53/DOMPurify/issues/317
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// only have to add this once, and can't do it globally because dompurify
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// not yet initialized at global scope
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61
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-
dompurify_1.default.addHook('afterSanitizeAttributes', node => {
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61
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+
dompurify_1.default.addHook('afterSanitizeAttributes', (node) => {
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if (node.tagName === 'A') {
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node.setAttribute('rel', 'noopener noreferrer');
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node.setAttribute('target', '_blank');
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package/ui/theme.d.ts
CHANGED
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@@ -1,4 +1,26 @@
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1
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-
import { PaletteOptions } from '@mui/material/styles/createPalette';
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1
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import type { PaletteOptions } from '@mui/material/styles/createPalette';
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2
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declare module '@mui/material/styles/createPalette' {
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interface Palette {
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tertiary: Palette['primary'];
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quaternary: Palette['primary'];
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bases: {
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7
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A: Palette['primary'];
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8
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C: Palette['primary'];
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9
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G: Palette['primary'];
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10
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T: Palette['primary'];
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};
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}
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interface PaletteOptions {
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tertiary?: PaletteOptions['primary'];
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quaternary?: PaletteOptions['primary'];
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bases?: {
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A?: PaletteOptions['primary'];
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C?: PaletteOptions['primary'];
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G?: PaletteOptions['primary'];
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T?: PaletteOptions['primary'];
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};
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}
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}
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export declare const jbrowseDefaultPalette: {
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primary: {
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main: string;
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package/util/index.d.ts
CHANGED
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@@ -202,6 +202,7 @@ export declare function stringify({ refName, coord, oob, }: {
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}): string;
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export declare const isElectron: boolean;
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export declare function revcom(seqString: string): string;
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export declare function reverse(seqString: string): string;
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export declare const complement: (seqString: string) => string;
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export declare function blobToDataURL(blob: Blob): Promise<string>;
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export declare const rIC: (((callback: IdleRequestCallback, options?: IdleRequestOptions | undefined) => number) & typeof requestIdleCallback) | ((cb: Function) => any);
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package/util/index.js
CHANGED
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@@ -29,8 +29,8 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
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return (mod && mod.__esModule) ? mod : { "default": mod };
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};
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Object.defineProperty(exports, "__esModule", { value: true });
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-
exports.
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-
exports.measureGridWidth = exports.getStr = exports.getUriLink = exports.useLocalStorage = exports.getLayoutId = exports.getViewParams = exports.getTickDisplayStr = void 0;
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exports.getBpDisplayStr = exports.supportedIndexingAdapters = exports.bytesForRegions = exports.objectHash = exports.hashCode = exports.updateStatus = exports.generateCodonTable = exports.defaultCodonTable = exports.defaultStops = exports.defaultStarts = exports.measureText = exports.rIC = exports.blobToDataURL = exports.complement = exports.reverse = exports.revcom = exports.isElectron = exports.stringify = exports.minmax = exports.renameRegionsIfNeeded = exports.renameRegionIfNeeded = exports.makeAbortableReaction = exports.findLastIndex = exports.iterMap = exports.bpSpanPx = exports.featureSpanPx = exports.cartesianToPolar = exports.polarToCartesian = exports.degToRad = exports.radToDeg = exports.bpToPx = exports.clamp = exports.compareLocStrings = exports.compareLocs = exports.parseLocString = exports.parseLocStringOneBased = exports.assembleLocString = exports.getContainingDisplay = exports.getContainingTrack = exports.getContainingView = exports.getSession = exports.findParentThatIs = exports.springAnimate = exports.findParentThat = exports.useDebouncedCallback = exports.useDebounce = exports.inProduction = exports.inDevelopment = exports.isFeature = exports.SimpleFeature = void 0;
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exports.measureGridWidth = exports.getStr = exports.getUriLink = exports.useLocalStorage = exports.getLayoutId = exports.getViewParams = exports.getTickDisplayStr = exports.toLocale = void 0;
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/* eslint-disable @typescript-eslint/no-explicit-any */
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const react_1 = require("react");
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const is_object_1 = __importDefault(require("is-object"));
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@@ -659,9 +659,13 @@ exports.stringify = stringify;
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// const i2 = process.versions.hasOwnProperty('electron')
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exports.isElectron = /electron/i.test(typeof navigator !== 'undefined' ? navigator.userAgent : '');
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function revcom(seqString) {
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662
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return (0, exports.complement)(seqString)
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662
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return reverse((0, exports.complement)(seqString));
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}
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exports.revcom = revcom;
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function reverse(seqString) {
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666
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return seqString.split('').reverse().join('');
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667
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}
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exports.reverse = reverse;
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exports.complement = (() => {
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const complementRegex = /[ACGT]/gi;
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// from bioperl: tr/acgtrymkswhbvdnxACGTRYMKSWHBVDNX/tgcayrkmswdvbhnxTGCAYRKMSWDVBHNX/
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