@jbrowse/core 2.0.0 → 2.0.1

package/util/index.js

@@ -54,7 +54,6 @@ var _exportNames = {
   hashCode: true,
   objectHash: true,
   bytesForRegions: true,
-  viewBpToPx: true,
   supportedIndexingAdapters: true,
   getBpDisplayStr: true,
   toLocale: true,
@@ -123,7 +122,6 @@ exports.toLocale = toLocale;
 exports.updateStatus = updateStatus;
 exports.useDebounce = useDebounce;
 exports.useDebouncedCallback = useDebouncedCallback;
-exports.viewBpToPx = viewBpToPx;
 
 var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
 
@@ -1003,7 +1001,7 @@ function _renameRegionsIfNeeded() {
             _context3.t0 = Object;
             _context3.next = 7;
             return Promise.all(assemblyNames.map( /*#__PURE__*/function () {
-              var _ref6 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2(assemblyName) {
+              var _ref5 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2(assemblyName) {
                 return _regenerator.default.wrap(function _callee2$(_context2) {
                   while (1) {
                     switch (_context2.prev = _context2.next) {
@@ -1025,7 +1023,7 @@ function _renameRegionsIfNeeded() {
               }));
 
               return function (_x10) {
-                return _ref6.apply(this, arguments);
+                return _ref5.apply(this, arguments);
               };
             }()));
 
@@ -1058,7 +1056,7 @@ function stringify(_ref3) {
   var refName = _ref3.refName,
       coord = _ref3.coord,
       oob = _ref3.oob;
-  return "".concat(refName, ":").concat(coord.toLocaleString('en-US')).concat(oob ? ' (out of bounds)' : '');
+  return refName ? "".concat(refName, ":").concat(coord.toLocaleString('en-US')).concat(oob ? ' (out of bounds)' : '') : '';
 } // this is recommended in a later comment in https://github.com/electron/electron/issues/2288
 // for detecting electron in a renderer process, which is the one that has node enabled for us
 // const isElectron = process.versions.electron
@@ -1146,20 +1144,25 @@ window.requestIdleCallback : function (cb) {
   }, 1);
 } : function (cb) {
   return cb();
-}; // xref https://gist.github.com/tophtucker/62f93a4658387bb61e4510c37e2e97cf
+}; // prettier-ignore
 
 exports.rIC = rIC;
+var widths = [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.2796875, 0.2765625, 0.3546875, 0.5546875, 0.5546875, 0.8890625, 0.665625, 0.190625, 0.3328125, 0.3328125, 0.3890625, 0.5828125, 0.2765625, 0.3328125, 0.2765625, 0.3015625, 0.5546875, 0.5546875, 0.5546875, 0.5546875, 0.5546875, 0.5546875, 0.5546875, 0.5546875, 0.5546875, 0.5546875, 0.2765625, 0.2765625, 0.584375, 0.5828125, 0.584375, 0.5546875, 1.0140625, 0.665625, 0.665625, 0.721875, 0.721875, 0.665625, 0.609375, 0.7765625, 0.721875, 0.2765625, 0.5, 0.665625, 0.5546875, 0.8328125, 0.721875, 0.7765625, 0.665625, 0.7765625, 0.721875, 0.665625, 0.609375, 0.721875, 0.665625, 0.94375, 0.665625, 0.665625, 0.609375, 0.2765625, 0.3546875, 0.2765625, 0.4765625, 0.5546875, 0.3328125, 0.5546875, 0.5546875, 0.5, 0.5546875, 0.5546875, 0.2765625, 0.5546875, 0.5546875, 0.221875, 0.240625, 0.5, 0.221875, 0.8328125, 0.5546875, 0.5546875, 0.5546875, 0.5546875, 0.3328125, 0.5, 0.2765625, 0.5546875, 0.5, 0.721875, 0.5, 0.5, 0.5, 0.3546875, 0.259375, 0.353125, 0.5890625]; // xref https://gist.github.com/tophtucker/62f93a4658387bb61e4510c37e2e97cf
 
 function measureText(str) {
   var fontSize = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : 10;
-  // prettier-ignore
-  var widths = [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.2796875, 0.2765625, 0.3546875, 0.5546875, 0.5546875, 0.8890625, 0.665625, 0.190625, 0.3328125, 0.3328125, 0.3890625, 0.5828125, 0.2765625, 0.3328125, 0.2765625, 0.3015625, 0.5546875, 0.5546875, 0.5546875, 0.5546875, 0.5546875, 0.5546875, 0.5546875, 0.5546875, 0.5546875, 0.5546875, 0.2765625, 0.2765625, 0.584375, 0.5828125, 0.584375, 0.5546875, 1.0140625, 0.665625, 0.665625, 0.721875, 0.721875, 0.665625, 0.609375, 0.7765625, 0.721875, 0.2765625, 0.5, 0.665625, 0.5546875, 0.8328125, 0.721875, 0.7765625, 0.665625, 0.7765625, 0.721875, 0.665625, 0.609375, 0.721875, 0.665625, 0.94375, 0.665625, 0.665625, 0.609375, 0.2765625, 0.3546875, 0.2765625, 0.4765625, 0.5546875, 0.3328125, 0.5546875, 0.5546875, 0.5, 0.5546875, 0.5546875, 0.2765625, 0.5546875, 0.5546875, 0.221875, 0.240625, 0.5, 0.221875, 0.8328125, 0.5546875, 0.5546875, 0.5546875, 0.5546875, 0.3328125, 0.5, 0.2765625, 0.5546875, 0.5, 0.721875, 0.5, 0.5, 0.5, 0.3546875, 0.259375, 0.353125, 0.5890625];
   var avg = 0.5279276315789471;
-  return String(str).split('').map(function (c) {
-    return c.charCodeAt(0) < widths.length ? widths[c.charCodeAt(0)] : avg;
-  }).reduce(function (cur, acc) {
-    return acc + cur;
-  }, 0) * fontSize;
+  var s = String(str);
+  var total = 0;
+
+  for (var i = 0; i < s.length; i++) {
+    var _widths$code;
+
+    var code = s.charCodeAt(i);
+    total += (_widths$code = widths[code]) !== null && _widths$code !== void 0 ? _widths$code : avg;
+  }
+
+  return total * fontSize;
 }
 
 var defaultStarts = ['ATG'];
@@ -1357,48 +1360,8 @@ function _bytesForRegions() {
   return _bytesForRegions.apply(this, arguments);
 }
 
-function viewBpToPx(_ref4) {
-  var refName = _ref4.refName,
-      coord = _ref4.coord,
-      regionNumber = _ref4.regionNumber,
-      self = _ref4.self;
-  var offsetBp = 0;
-  var interRegionPaddingBp = self.interRegionPaddingWidth * self.bpPerPx;
-  var minimumBlockBp = self.minimumBlockWidth * self.bpPerPx;
-  var index = self.displayedRegions.findIndex(function (region, idx) {
-    var len = region.end - region.start;
-
-    if (refName === region.refName && coord >= region.start && coord <= region.end) {
-      if (regionNumber ? regionNumber === idx : true) {
-        offsetBp += region.reversed ? region.end - coord : coord - region.start;
-        return true;
-      }
-    } // add the interRegionPaddingWidth if the boundary is in the screen
-    // e.g. offset>=0 && offset<width
-
-
-    if (len > minimumBlockBp && offsetBp / self.bpPerPx >= 0 && offsetBp / self.bpPerPx < self.width) {
-      offsetBp += len + interRegionPaddingBp;
-    } else {
-      offsetBp += len;
-    }
-
-    return false;
-  });
-  var found = self.displayedRegions[index];
-
-  if (found) {
-    return {
-      index: index,
-      offsetPx: Math.round(offsetBp / self.bpPerPx)
-    };
-  }
-
-  return undefined;
-} // supported adapter types by text indexer
+// supported adapter types by text indexer
 //  ensure that this matches the method found in @jbrowse/text-indexing/util
-
-
 function supportedIndexingAdapters(type) {
   return ['Gff3TabixAdapter', 'VcfTabixAdapter', 'Gff3Adapter', 'VcfAdapter'].includes(type);
 }
@@ -1451,8 +1414,8 @@ function getViewParams(model, exportSVG) {
   };
 }
 
-function getLayoutId(_ref5) {
-  var sessionId = _ref5.sessionId,
-      layoutId = _ref5.layoutId;
+function getLayoutId(_ref4) {
+  var sessionId = _ref4.sessionId,
+      layoutId = _ref4.layoutId;
   return sessionId + '-' + layoutId;
 }