@jbrowse/core 1.7.9 → 1.7.10

package/assemblyManager/assemblyManager.js

@@ -148,33 +148,30 @@ function assemblyManagerFactory(assemblyConfigType, pluginManager) {
         }))();
       },
       getRefNameMapForAdapter: function getRefNameMapForAdapter(adapterConf, assemblyName, opts) {
-        return (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
-          var _self$get;
+        var _this = this;
 
+        return (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
+          var asm;
           return _regenerator.default.wrap(function _callee2$(_context2) {
             while (1) {
               switch (_context2.prev = _context2.next) {
                 case 0:
                   if (!assemblyName) {
-                    _context2.next = 4;
+                    _context2.next = 5;
                     break;
                   }
 
                   _context2.next = 3;
-                  return (0, _util.when)(function () {
-                    return Boolean(self.get(assemblyName));
-                  }, {
-                    signal: opts.signal,
-                    name: 'when assembly ready'
-                  });
+                  return _this.waitForAssembly(assemblyName);
 
                 case 3:
-                  return _context2.abrupt("return", (_self$get = self.get(assemblyName)) === null || _self$get === void 0 ? void 0 : _self$get.getRefNameMapForAdapter(adapterConf, opts));
+                  asm = _context2.sent;
+                  return _context2.abrupt("return", asm === null || asm === void 0 ? void 0 : asm.getRefNameMapForAdapter(adapterConf, opts));
 
-                case 4:
+                case 5:
                   return _context2.abrupt("return", {});
 
-                case 5:
+                case 6:
                 case "end":
                   return _context2.stop();
               }
@@ -183,33 +180,30 @@ function assemblyManagerFactory(assemblyConfigType, pluginManager) {
         }))();
       },
       getReverseRefNameMapForAdapter: function getReverseRefNameMapForAdapter(adapterConf, assemblyName, opts) {
-        return (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3() {
-          var _self$get2;
+        var _this2 = this;
 
+        return (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3() {
+          var asm;
           return _regenerator.default.wrap(function _callee3$(_context3) {
             while (1) {
               switch (_context3.prev = _context3.next) {
                 case 0:
                   if (!assemblyName) {
-                    _context3.next = 4;
+                    _context3.next = 5;
                     break;
                   }
 
                   _context3.next = 3;
-                  return (0, _util.when)(function () {
-                    return Boolean(self.get(assemblyName));
-                  }, {
-                    signal: opts.signal,
-                    name: 'when assembly ready'
-                  });
+                  return _this2.waitForAssembly(assemblyName);
 
                 case 3:
-                  return _context3.abrupt("return", (_self$get2 = self.get(assemblyName)) === null || _self$get2 === void 0 ? void 0 : _self$get2.getReverseRefNameMapForAdapter(adapterConf, opts));
+                  asm = _context3.sent;
+                  return _context3.abrupt("return", asm === null || asm === void 0 ? void 0 : asm.getReverseRefNameMapForAdapter(adapterConf, opts));
 
-                case 4:
+                case 5:
                   return _context3.abrupt("return", {});
 
-                case 5:
+                case 6:
                 case "end":
                   return _context3.stop();
               }
@@ -241,7 +235,7 @@ function assemblyManagerFactory(assemblyConfigType, pluginManager) {
         self.assemblies.remove(asm);
       },
       afterAttach: function afterAttach() {
-        var _this = this;
+        var _this3 = this;
 
         (0, _mobxStateTree.addDisposer)(self, (0, _mobx.reaction)( // have to slice it to be properly reacted to
         function () {
@@ -249,7 +243,7 @@ function assemblyManagerFactory(assemblyConfigType, pluginManager) {
         }, function (assemblyConfigs) {
           self.assemblies.forEach(function (asm) {
             if (!asm.configuration) {
-              _this.removeAssembly(asm);
+              _this3.removeAssembly(asm);
             }
           });
           assemblyConfigs.forEach(function (assemblyConfig) {
@@ -258,7 +252,7 @@ function assemblyManagerFactory(assemblyConfigType, pluginManager) {
             });
 
             if (existingAssemblyIdx === -1) {
-              _this.addAssembly(assemblyConfig);
+              _this3.addAssembly(assemblyConfig);
             }
           });
         }, {

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/core",
-  "version": "1.7.9",
+  "version": "1.7.10",
   "description": "JBrowse 2 core libraries used by plugins",
   "keywords": [
     "jbrowse",
@@ -35,6 +35,7 @@
     "canvas": "^2.8.0",
     "canvas-sequencer": "^3.1.0",
     "canvas2svg": "^1.0.16",
+    "clone": "^2.1.2",
     "clsx": "^1.0.4",
     "color": "^3.1.3",
     "copy-to-clipboard": "^3.3.1",
@@ -50,6 +51,7 @@
     "json-stable-stringify": "^1.0.1",
     "librpc-web-mod": "^1.1.5",
     "load-script2": "^2.0.5",
+    "material-ui-popup-state": "^1.9.3",
     "object.fromentries": "^2.0.0",
     "rbush": "^3.0.1",
     "react-error-boundary": "^3.0.0",
@@ -74,5 +76,5 @@
     "access": "public",
     "directory": "dist"
   },
-  "gitHead": "a6504c385d703ce6e755d05652ef659ffe28c864"
+  "gitHead": "02d8c1e88e5603ea5855faed4ccb814e28071b32"
 }

package/pluggableElementTypes/models/baseTrackConfig.js

@@ -58,19 +58,26 @@ function createBaseTrackConfig(pluginManager) {
       },
       textSearchAdapter: pluginManager.pluggableConfigSchemaType('text search adapter')
     }),
-    displays: _mobxStateTree.types.array(pluginManager.pluggableConfigSchemaType('display')) // see corresponding entry in circular-view ChordTrack
-    // no config slot editor exists for this at the time being
-    // configRelationships: {
-    //   type: 'configRelationships',
-    //   model: types.array(
-    //     types.model('Relationship', {
-    //       type: types.string,
-    //       target: types.maybe(types.reference(base)),
-    //     }),
-    //   ),
-    //   defaultValue: [],
-    // },
-
+    displays: _mobxStateTree.types.array(pluginManager.pluggableConfigSchemaType('display')),
+    formatDetails: (0, _configuration.ConfigurationSchema)('FormatDetails', {
+      feature: {
+        type: 'frozen',
+        description: 'adds extra fields to the feature details',
+        defaultValue: {},
+        contextVariable: ['feature']
+      },
+      subfeatures: {
+        type: 'frozen',
+        description: 'adds extra fields to the subfeatures of a feature',
+        defaultValue: {},
+        contextVariable: ['feature']
+      },
+      depth: {
+        type: 'number',
+        defaultValue: 2,
+        description: 'depth to iterate on subfeatures'
+      }
+    })
   }, {
     preProcessSnapshot: function preProcessSnapshot(s) {
       var snap = JSON.parse(JSON.stringify(s));