@jbrowse/core 1.4.1 → 1.5.2

package/util/layouts/GranularRectLayout.test.js

@@ -8,7 +8,10 @@ var _GranularRectLayout = _interopRequireDefault(require("./GranularRectLayout")
 
 describe('GranularRectLayout', function () {
   it('lays out non-overlapping features end to end', function () {
-    var l = new _GranularRectLayout.default();
+    var l = new _GranularRectLayout.default({
+      pitchX: 10,
+      pitchY: 4
+    });
     var testRects = [['1,0', 4133, 5923, 16], ['1,1', 11299, 12389, 16], ['1,2', 21050, 22778, 16], ['1,3', 41125, 47459, 16], ['1,4', 47926, 49272, 16], ['1,5', 50240, 52495, 16], ['1,6', 53329, 56283, 16], ['1,7', 59309, 79441, 16], ['1,8', 80359, 83196, 16], ['1,9', 92147, 94188, 16], ['1,10', 96241, 103626, 16], ['1,11', 104396, 108110, 16], ['1,12', 111878, 125251, 16], ['1,13', 125747, 128085, 16], ['1,14', 131492, 132641, 16], ['1,15', 133857, 134931, 16], ['1,16', 137023, 138220, 16], ['1,17', 140703, 145668, 16], ['1,18', 146045, 147059, 16], ['1,19', 162296, 165395, 16], ['1,20', 168531, 170795, 16], ['1,21', 174812, 180475, 16], ['1,22', 184302, 188826, 16], ['1,23', 189609, 191141, 16], ['1,24', 199799, 201389, 16], ['1,25', 203436, 211345, 16], ['1,26', 212100, 212379, 16], ['1,27', 213418, 214627, 16], ['1,28', 215115, 219344, 16], ['1,29', 220067, 222525, 16], ['1,30', 223308, 228141, 16], ['1,31', 234473, 236768, 16], ['1,32', 239691, 245015, 16]];
 
     for (var i = 0; i < testRects.length; i += 1) {
@@ -17,7 +20,10 @@ describe('GranularRectLayout', function () {
     }
   });
   it('stacks up overlapping features', function () {
-    var l = new _GranularRectLayout.default();
+    var l = new _GranularRectLayout.default({
+      pitchX: 10,
+      pitchY: 4
+    });
     var testRects = [];
 
     for (var i = 1; i <= 20; i += 1) {
@@ -26,35 +32,76 @@ describe('GranularRectLayout', function () {
 
     for (var _i = 0; _i < testRects.length; _i += 1) {
       var top = l.addRect.apply(l, (0, _toConsumableArray2.default)(testRects[_i]));
-      expect(top).toEqual(_i % 2 * 3);
+      expect(top).toEqual(_i % 2 * 4);
     }
   });
   it('discards regions', function () {
-    var l = new _GranularRectLayout.default();
+    var l = new _GranularRectLayout.default({
+      pitchX: 10,
+      pitchY: 4
+    });
 
     for (var i = 0; i < 20; i += 1) {
       var top = l.addRect("feature-".concat(i), 10000 * i + 4000, 10000 * i + 16000, 1);
-      expect(top).toEqual(i % 2 * 3);
+      expect(top).toEqual(i % 2 * 4);
     }
+
+    expect(l.bitmap[0].rowState.bits.length).toBe(34812);
+    expect(l.bitmap[1].rowState.bits.length).toBe(34812);
+    l.discardRange(190000, 220000);
+    expect(l.bitmap[0].rowState.bits.length).toBe(24802);
+    expect(l.bitmap[1].rowState.bits.length).toBe(23802);
+    l.discardRange(0, 100000);
+    expect(l.bitmap[0].rowState.bits.length).toBe(19001);
+    expect(l.bitmap[1].rowState.bits.length).toBe(23802);
+    l.discardRange(0, 220000);
+    expect(l.bitmap[0].rowState).toBeUndefined();
   }); // see issue #486
 
   it('tests that adding +/- pitchX fixes resolution causing errors', function () {
-    var l = new _GranularRectLayout.default();
+    var l = new _GranularRectLayout.default({
+      pitchX: 91.21851599727707,
+      pitchY: 3
+    });
     l.addRect('test', 2581541, 2581542, 1);
     expect(l.serializeRegion({
       start: 2581491,
       end: 2818659
     }).rectangles.test).toBeTruthy();
   });
+  it('tests reinitializing layout due to throwing away old one', function () {
+    var spy = jest.spyOn(console, 'warn').mockImplementation(function () {});
+    var l = new _GranularRectLayout.default({
+      pitchX: 1,
+      pitchY: 1,
+      maxHeight: 600
+    });
+    l.addRect('test1', 0, 10000, 1);
+    l.addRect('test2', 1000000, 1000100, 1);
+    l.addRect('test3', 0, 10000, 1);
+    expect(l.rectangles.size).toBe(3);
+    expect(spy).toHaveBeenCalled();
+    spy.mockRestore();
+  });
   it('tests adding a gigantic feature that fills entire row with another smaller added on top', function () {
     var l = new _GranularRectLayout.default({
+      pitchX: 100,
+      pitchY: 1,
       maxHeight: 600
     });
     expect(l.getByCoord(50000, 0)).toEqual(undefined);
-    l.addRect('test1', 0, 10000000, 1);
-    expect(l.getByCoord(50000, 0)).toEqual('test1');
-    l.addRect('test2', 0, 1000, 1);
-    expect(l.getByCoord(500, 2)).toEqual('test2');
+    l.addRect('test1', 0, 100000000, 1, {
+      id: 'feat1'
+    });
+    expect(l.getByCoord(50000, 0)).toEqual({
+      id: 'feat1'
+    });
+    l.addRect('test2', 0, 1000, 1, {
+      id: 'feat2'
+    });
+    expect(l.getByCoord(500, 1)).toEqual({
+      id: 'feat2'
+    });
     expect(l.rectangles.size).toBe(2);
   });
 });

package/util/layouts/PrecomputedLayout.js

@@ -29,7 +29,8 @@ var PrecomputedLayout = /*#__PURE__*/function () {
     (0, _defineProperty2.default)(this, "totalHeight", void 0);
     (0, _defineProperty2.default)(this, "maxHeightReached", void 0);
     (0, _defineProperty2.default)(this, "rbush", void 0);
-    this.rectangles = new Map(Object.entries(rectangles));
+    this.rectangles = new Map(Object.entries(rectangles)); // rectangles is of the form "featureId": [leftPx, topPx, rightPx, bottomPx]
+
     this.totalHeight = totalHeight;
     this.maxHeightReached = maxHeightReached;
     this.rbush = new _rbush.default();

package/util/layouts/index.d.ts

@@ -0,0 +1,7 @@
+export * from './BaseLayout';
+export { default as GranularRectLayout } from './GranularRectLayout';
+export { default as MultiLayout } from './MultiLayout';
+export { default as PrecomputedLayout } from './PrecomputedLayout';
+export type { Layout } from './PrecomputedLayout';
+export { default as PrecomputedMultiLayout } from './PrecomputedMultiLayout';
+export { default as SceneGraph } from './SceneGraph';

package/util/layouts/index.js

@@ -0,0 +1,68 @@
+"use strict";
+
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
+
+Object.defineProperty(exports, "__esModule", {
+  value: true
+});
+var _exportNames = {
+  GranularRectLayout: true,
+  MultiLayout: true,
+  PrecomputedLayout: true,
+  PrecomputedMultiLayout: true,
+  SceneGraph: true
+};
+Object.defineProperty(exports, "GranularRectLayout", {
+  enumerable: true,
+  get: function get() {
+    return _GranularRectLayout.default;
+  }
+});
+Object.defineProperty(exports, "MultiLayout", {
+  enumerable: true,
+  get: function get() {
+    return _MultiLayout.default;
+  }
+});
+Object.defineProperty(exports, "PrecomputedLayout", {
+  enumerable: true,
+  get: function get() {
+    return _PrecomputedLayout.default;
+  }
+});
+Object.defineProperty(exports, "PrecomputedMultiLayout", {
+  enumerable: true,
+  get: function get() {
+    return _PrecomputedMultiLayout.default;
+  }
+});
+Object.defineProperty(exports, "SceneGraph", {
+  enumerable: true,
+  get: function get() {
+    return _SceneGraph.default;
+  }
+});
+
+var _BaseLayout = require("./BaseLayout");
+
+Object.keys(_BaseLayout).forEach(function (key) {
+  if (key === "default" || key === "__esModule") return;
+  if (Object.prototype.hasOwnProperty.call(_exportNames, key)) return;
+  if (key in exports && exports[key] === _BaseLayout[key]) return;
+  Object.defineProperty(exports, key, {
+    enumerable: true,
+    get: function get() {
+      return _BaseLayout[key];
+    }
+  });
+});
+
+var _GranularRectLayout = _interopRequireDefault(require("./GranularRectLayout"));
+
+var _MultiLayout = _interopRequireDefault(require("./MultiLayout"));
+
+var _PrecomputedLayout = _interopRequireDefault(require("./PrecomputedLayout"));
+
+var _PrecomputedMultiLayout = _interopRequireDefault(require("./PrecomputedMultiLayout"));
+
+var _SceneGraph = _interopRequireDefault(require("./SceneGraph"));

package/util/mst-reflection.js

@@ -3,11 +3,11 @@
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports.getSubType = getSubType;
-exports.getUnionSubTypes = getUnionSubTypes;
-exports.getPropertyType = getPropertyType;
 exports.getDefaultValue = getDefaultValue;
 exports.getEnumerationValues = getEnumerationValues;
+exports.getPropertyType = getPropertyType;
+exports.getSubType = getSubType;
+exports.getUnionSubTypes = getUnionSubTypes;
 exports.resolveLateType = resolveLateType;
 
 var _mobxStateTree = require("mobx-state-tree");

package/util/offscreenCanvasPonyfill.js

@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports.PonyfillOffscreenCanvas = exports.PonyfillOffscreenContext = exports.ImageBitmapType = exports.createImageBitmap = exports.createCanvas = void 0;
+exports.createImageBitmap = exports.createCanvas = exports.PonyfillOffscreenContext = exports.PonyfillOffscreenCanvas = exports.ImageBitmapType = void 0;
 
 var _typeof2 = _interopRequireDefault(require("@babel/runtime/helpers/typeof"));
 

package/util/range.js

@@ -3,8 +3,8 @@
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports.intersection2 = intersection2;
 exports.doesIntersect2 = doesIntersect2;
+exports.intersection2 = intersection2;
 exports.isContainedWithin = isContainedWithin;
 
 /**

package/util/simpleFeature.js

@@ -5,8 +5,8 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports.isFeature = isFeature;
 exports.default = void 0;
+exports.isFeature = isFeature;
 
 var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
 

package/util/stats.js

@@ -5,11 +5,11 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
+exports.blankStats = blankStats;
+exports.calcPerBaseStats = calcPerBaseStats;
 exports.calcStdFromSums = calcStdFromSums;
 exports.rectifyStats = rectifyStats;
-exports.calcPerBaseStats = calcPerBaseStats;
 exports.scoresToStats = scoresToStats;
-exports.blankStats = blankStats;
 
 var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
 

package/util/tracks.d.ts

@@ -25,371 +25,40 @@ export declare function setBlobMap(map: {
 export declare function storeBlobLocation(location: PreFileLocation): import("./types").PreUriLocation | import("./types").PreLocalPathLocation | {
     name: string;
     blobId: string;
+    locationType: string;
 };
-export declare function guessAdapter(file: FileLocation, index: FileLocation | undefined, getFileName: (f: FileLocation) => string, adapterHint?: string): {
-    type: string;
-    bamLocation: FileLocation;
-    index: {
-        location: import("./types").LocalPathLocation | import("./types").UriLocation | import("./types").BlobLocation | {
-            uri: string;
-            localPath?: undefined;
-        };
-        indexType: string;
-    };
-    cramLocation?: undefined;
-    craiLocation?: undefined;
-    gffGzLocation?: undefined;
-    vcfLocation?: undefined;
-    vcfGzLocation?: undefined;
-    bedGzLocation?: undefined;
-    bigBedLocation?: undefined;
-    bigWigLocation?: undefined;
-    fastaLocation?: undefined;
-    faiLocation?: undefined;
-    gziLocation?: undefined;
-    twoBitLocation?: undefined;
-    rootUrlTemplate?: undefined;
-    endpoint?: undefined;
-    hicLocation?: undefined;
-    pafLocation?: undefined;
-} | {
-    type: string;
-    cramLocation: FileLocation;
-    craiLocation: import("./types").LocalPathLocation | import("./types").UriLocation | import("./types").BlobLocation | {
-        uri: string;
-        localPath?: undefined;
-    };
-    bamLocation?: undefined;
-    index?: undefined;
-    gffGzLocation?: undefined;
-    vcfLocation?: undefined;
-    vcfGzLocation?: undefined;
-    bedGzLocation?: undefined;
-    bigBedLocation?: undefined;
-    bigWigLocation?: undefined;
-    fastaLocation?: undefined;
-    faiLocation?: undefined;
-    gziLocation?: undefined;
-    twoBitLocation?: undefined;
-    rootUrlTemplate?: undefined;
-    endpoint?: undefined;
-    hicLocation?: undefined;
-    pafLocation?: undefined;
-} | {
-    type: string;
-    bamLocation?: undefined;
-    index?: undefined;
-    cramLocation?: undefined;
-    craiLocation?: undefined;
-    gffGzLocation?: undefined;
-    vcfLocation?: undefined;
-    vcfGzLocation?: undefined;
-    bedGzLocation?: undefined;
-    bigBedLocation?: undefined;
-    bigWigLocation?: undefined;
-    fastaLocation?: undefined;
-    faiLocation?: undefined;
-    gziLocation?: undefined;
-    twoBitLocation?: undefined;
-    rootUrlTemplate?: undefined;
-    endpoint?: undefined;
-    hicLocation?: undefined;
-    pafLocation?: undefined;
-} | {
-    type: string;
-    gffGzLocation: FileLocation;
-    index: {
-        location: import("./types").LocalPathLocation | import("./types").UriLocation | import("./types").BlobLocation | {
-            uri: string;
-            localPath?: undefined;
-        };
-        indexType: string;
-    };
-    bamLocation?: undefined;
-    cramLocation?: undefined;
-    craiLocation?: undefined;
-    vcfLocation?: undefined;
-    vcfGzLocation?: undefined;
-    bedGzLocation?: undefined;
-    bigBedLocation?: undefined;
-    bigWigLocation?: undefined;
-    fastaLocation?: undefined;
-    faiLocation?: undefined;
-    gziLocation?: undefined;
-    twoBitLocation?: undefined;
-    rootUrlTemplate?: undefined;
-    endpoint?: undefined;
-    hicLocation?: undefined;
-    pafLocation?: undefined;
-} | {
-    type: string;
-    vcfLocation: FileLocation;
-    bamLocation?: undefined;
-    index?: undefined;
-    cramLocation?: undefined;
-    craiLocation?: undefined;
-    gffGzLocation?: undefined;
-    vcfGzLocation?: undefined;
-    bedGzLocation?: undefined;
-    bigBedLocation?: undefined;
-    bigWigLocation?: undefined;
-    fastaLocation?: undefined;
-    faiLocation?: undefined;
-    gziLocation?: undefined;
-    twoBitLocation?: undefined;
-    rootUrlTemplate?: undefined;
-    endpoint?: undefined;
-    hicLocation?: undefined;
-    pafLocation?: undefined;
-} | {
-    type: string;
-    vcfGzLocation: FileLocation;
-    index: {
-        location: import("./types").LocalPathLocation | import("./types").UriLocation | import("./types").BlobLocation | {
-            uri: string;
-            localPath?: undefined;
-        };
-        indexType: string;
-    };
-    bamLocation?: undefined;
-    cramLocation?: undefined;
-    craiLocation?: undefined;
-    gffGzLocation?: undefined;
-    vcfLocation?: undefined;
-    bedGzLocation?: undefined;
-    bigBedLocation?: undefined;
-    bigWigLocation?: undefined;
-    fastaLocation?: undefined;
-    faiLocation?: undefined;
-    gziLocation?: undefined;
-    twoBitLocation?: undefined;
-    rootUrlTemplate?: undefined;
-    endpoint?: undefined;
-    hicLocation?: undefined;
-    pafLocation?: undefined;
-} | {
-    type: string;
-    bedGzLocation: FileLocation;
-    index: {
-        location: import("./types").LocalPathLocation | import("./types").UriLocation | import("./types").BlobLocation | {
-            uri: string;
-            localPath?: undefined;
-        };
-        indexType: string;
-    };
-    bamLocation?: undefined;
-    cramLocation?: undefined;
-    craiLocation?: undefined;
-    gffGzLocation?: undefined;
-    vcfLocation?: undefined;
-    vcfGzLocation?: undefined;
-    bigBedLocation?: undefined;
-    bigWigLocation?: undefined;
-    fastaLocation?: undefined;
-    faiLocation?: undefined;
-    gziLocation?: undefined;
-    twoBitLocation?: undefined;
-    rootUrlTemplate?: undefined;
-    endpoint?: undefined;
-    hicLocation?: undefined;
-    pafLocation?: undefined;
-} | {
-    type: string;
-    bigBedLocation: FileLocation;
-    bamLocation?: undefined;
-    index?: undefined;
-    cramLocation?: undefined;
-    craiLocation?: undefined;
-    gffGzLocation?: undefined;
-    vcfLocation?: undefined;
-    vcfGzLocation?: undefined;
-    bedGzLocation?: undefined;
-    bigWigLocation?: undefined;
-    fastaLocation?: undefined;
-    faiLocation?: undefined;
-    gziLocation?: undefined;
-    twoBitLocation?: undefined;
-    rootUrlTemplate?: undefined;
-    endpoint?: undefined;
-    hicLocation?: undefined;
-    pafLocation?: undefined;
-} | {
-    type: string;
-    bigWigLocation: FileLocation;
-    bamLocation?: undefined;
-    index?: undefined;
-    cramLocation?: undefined;
-    craiLocation?: undefined;
-    gffGzLocation?: undefined;
-    vcfLocation?: undefined;
-    vcfGzLocation?: undefined;
-    bedGzLocation?: undefined;
-    bigBedLocation?: undefined;
-    fastaLocation?: undefined;
-    faiLocation?: undefined;
-    gziLocation?: undefined;
-    twoBitLocation?: undefined;
-    rootUrlTemplate?: undefined;
-    endpoint?: undefined;
-    hicLocation?: undefined;
-    pafLocation?: undefined;
-} | {
-    type: string;
-    fastaLocation: FileLocation;
-    faiLocation: import("./types").LocalPathLocation | import("./types").UriLocation | import("./types").BlobLocation | {
-        uri: string;
-        localPath?: undefined;
-    };
-    bamLocation?: undefined;
-    index?: undefined;
-    cramLocation?: undefined;
-    craiLocation?: undefined;
-    gffGzLocation?: undefined;
-    vcfLocation?: undefined;
-    vcfGzLocation?: undefined;
-    bedGzLocation?: undefined;
-    bigBedLocation?: undefined;
-    bigWigLocation?: undefined;
-    gziLocation?: undefined;
-    twoBitLocation?: undefined;
-    rootUrlTemplate?: undefined;
-    endpoint?: undefined;
-    hicLocation?: undefined;
-    pafLocation?: undefined;
-} | {
-    type: string;
-    fastaLocation: FileLocation;
-    faiLocation: import("./types").BlobLocation | {
-        uri: string;
-        localPath?: undefined;
-    } | {
-        localPath: string;
-        uri?: undefined;
-    };
-    gziLocation: import("./types").BlobLocation | {
-        uri: string;
-        localPath?: undefined;
-    } | {
-        localPath: string;
-        uri?: undefined;
-    };
-    bamLocation?: undefined;
-    index?: undefined;
-    cramLocation?: undefined;
-    craiLocation?: undefined;
-    gffGzLocation?: undefined;
-    vcfLocation?: undefined;
-    vcfGzLocation?: undefined;
-    bedGzLocation?: undefined;
-    bigBedLocation?: undefined;
-    bigWigLocation?: undefined;
-    twoBitLocation?: undefined;
-    rootUrlTemplate?: undefined;
-    endpoint?: undefined;
-    hicLocation?: undefined;
-    pafLocation?: undefined;
-} | {
-    type: string;
-    twoBitLocation: FileLocation;
-    bamLocation?: undefined;
-    index?: undefined;
-    cramLocation?: undefined;
-    craiLocation?: undefined;
-    gffGzLocation?: undefined;
-    vcfLocation?: undefined;
-    vcfGzLocation?: undefined;
-    bedGzLocation?: undefined;
-    bigBedLocation?: undefined;
-    bigWigLocation?: undefined;
-    fastaLocation?: undefined;
-    faiLocation?: undefined;
-    gziLocation?: undefined;
-    rootUrlTemplate?: undefined;
-    endpoint?: undefined;
-    hicLocation?: undefined;
-    pafLocation?: undefined;
-} | {
-    type: string;
-    rootUrlTemplate: FileLocation;
-    bamLocation?: undefined;
-    index?: undefined;
-    cramLocation?: undefined;
-    craiLocation?: undefined;
-    gffGzLocation?: undefined;
-    vcfLocation?: undefined;
-    vcfGzLocation?: undefined;
-    bedGzLocation?: undefined;
-    bigBedLocation?: undefined;
-    bigWigLocation?: undefined;
-    fastaLocation?: undefined;
-    faiLocation?: undefined;
-    gziLocation?: undefined;
-    twoBitLocation?: undefined;
-    endpoint?: undefined;
-    hicLocation?: undefined;
-    pafLocation?: undefined;
-} | {
-    type: string;
-    endpoint: FileLocation;
-    bamLocation?: undefined;
-    index?: undefined;
-    cramLocation?: undefined;
-    craiLocation?: undefined;
-    gffGzLocation?: undefined;
-    vcfLocation?: undefined;
-    vcfGzLocation?: undefined;
-    bedGzLocation?: undefined;
-    bigBedLocation?: undefined;
-    bigWigLocation?: undefined;
-    fastaLocation?: undefined;
-    faiLocation?: undefined;
-    gziLocation?: undefined;
-    twoBitLocation?: undefined;
-    rootUrlTemplate?: undefined;
-    hicLocation?: undefined;
-    pafLocation?: undefined;
-} | {
-    type: string;
-    hicLocation: FileLocation;
-    bamLocation?: undefined;
-    index?: undefined;
-    cramLocation?: undefined;
-    craiLocation?: undefined;
-    gffGzLocation?: undefined;
-    vcfLocation?: undefined;
-    vcfGzLocation?: undefined;
-    bedGzLocation?: undefined;
-    bigBedLocation?: undefined;
-    bigWigLocation?: undefined;
-    fastaLocation?: undefined;
-    faiLocation?: undefined;
-    gziLocation?: undefined;
-    twoBitLocation?: undefined;
-    rootUrlTemplate?: undefined;
-    endpoint?: undefined;
-    pafLocation?: undefined;
+/**
+ * creates a new location from the provided location including the appropriate suffix and location type
+ * @param location - the FileLocation
+ * @param suffix - the file suffix (e.g. .bam)
+ * @returns the constructed location object from the provided prameters
+ */
+export declare function makeIndex(location: FileLocation, suffix: string): import("./types").BlobLocation | {
+    uri: string;
+    locationType: string;
+    localPath?: undefined;
 } | {
-    type: string;
-    pafLocation: FileLocation;
-    bamLocation?: undefined;
-    index?: undefined;
-    cramLocation?: undefined;
-    craiLocation?: undefined;
-    gffGzLocation?: undefined;
-    vcfLocation?: undefined;
-    vcfGzLocation?: undefined;
-    bedGzLocation?: undefined;
-    bigBedLocation?: undefined;
-    bigWigLocation?: undefined;
-    fastaLocation?: undefined;
-    faiLocation?: undefined;
-    gziLocation?: undefined;
-    twoBitLocation?: undefined;
-    rootUrlTemplate?: undefined;
-    endpoint?: undefined;
-    hicLocation?: undefined;
+    localPath: string;
+    locationType: string;
+    uri?: undefined;
 };
-export declare function guessTrackType(adapterType: string): string;
+/**
+ * constructs a potential index file (with suffix) from the provided file name
+ * @param name - the name of the index file
+ * @param typeA - one option of a potential two file suffix (e.g. CSI, BAI)
+ * @param typeB - the second option of a potential two file suffix (e.g. CSI, BAI)
+ * @returns a likely name of the index file for a given filename
+ */
+export declare function makeIndexType(name: string | undefined, typeA: string, typeB: string): string;
+export interface AdapterConfig {
+    type: string;
+    [key: string]: unknown;
+}
+export declare type AdapterGuesser = (file: FileLocation, index?: FileLocation, adapterHint?: string) => AdapterConfig | undefined;
+export declare type TrackTypeGuesser = (adapterName: string) => string | undefined;
+export declare function getFileName(track: FileLocation): string;
+export declare function guessAdapter(file: FileLocation, index: FileLocation | undefined, adapterHint?: string, model?: IAnyStateTreeNode): AdapterConfig;
+export declare function guessTrackType(adapterType: string, model?: IAnyStateTreeNode): string;
 export declare function generateUnsupportedTrackConf(trackName: string, trackUrl: string, categories: string[] | undefined): {
     type: string;
     name: string;