@jbrowse/cli 5.0.0-beta.2 → 5.0.0-beta.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (11) hide show
  1. package/README.md +17 -10
  2. package/dist/commands/add-track.js +3 -3
  3. package/dist/commands/admin-server/index.js +13 -5
  4. package/dist/commands/admin-server/utils.js +8 -6
  5. package/dist/commands/make-pif/index.js +1 -1
  6. package/dist/commands/text-index/adapter-utils.js +0 -4
  7. package/dist/commands/validate/configManifest.generated.js +158 -478
  8. package/dist/version.js +1 -1
  9. package/package.json +5 -9
  10. package/bin/run +0 -4
  11. package/bundle/index.js +0 -1577
package/dist/commands/validate/configManifest.generated.js CHANGED
@@ -1040,10 +1040,6 @@ export const configManifest = {
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  "name": "type",
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  "type": "\"BgzipMafAdapter\""
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  },
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- {
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- "name": "samples",
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- "type": "(JexlString | frozen)"
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- },
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  {
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  "name": "mafGzLocation",
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  "type": "(JexlString | (LocalPathLocation | UriLocation | BlobLocation | FileHandleLocation))"
@@ -1052,6 +1048,10 @@ export const configManifest = {
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  "name": "taiLocation",
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  "type": "(JexlString | (LocalPathLocation | UriLocation | BlobLocation | FileHandleLocation))"
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  },
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+ {
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+ "name": "samples",
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+ "type": "(JexlString | frozen)"
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+ },
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  {
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  "name": "nhLocation",
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  "type": "(JexlString | (LocalPathLocation | UriLocation | BlobLocation | FileHandleLocation))"
@@ -1067,7 +1067,8 @@ export const configManifest = {
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  ],
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  "shorthandKeys": [
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  "uri",
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- "baseUri"
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+ "baseUri",
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+ "nhUri"
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  ]
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  },
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  "BgzipTaffyAdapter": {
@@ -1076,10 +1077,6 @@ export const configManifest = {
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  "name": "type",
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  "type": "\"BgzipTaffyAdapter\""
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  },
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- {
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- "name": "samples",
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- "type": "(JexlString | frozen)"
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- },
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  {
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  "name": "tafGzLocation",
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  "type": "(JexlString | (LocalPathLocation | UriLocation | BlobLocation | FileHandleLocation))"
@@ -1088,6 +1085,10 @@ export const configManifest = {
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  "name": "taiLocation",
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  "type": "(JexlString | (LocalPathLocation | UriLocation | BlobLocation | FileHandleLocation))"
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  },
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+ {
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+ "name": "samples",
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+ "type": "(JexlString | frozen)"
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+ },
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  {
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  "name": "nhLocation",
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  "type": "(JexlString | (LocalPathLocation | UriLocation | BlobLocation | FileHandleLocation))"
@@ -1103,7 +1104,8 @@ export const configManifest = {
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  ],
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  "shorthandKeys": [
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  "uri",
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- "baseUri"
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+ "baseUri",
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+ "nhUri"
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  ]
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  },
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  "BigMafAdapter": {
@@ -1112,14 +1114,14 @@ export const configManifest = {
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  "name": "type",
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  "type": "\"BigMafAdapter\""
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  },
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- {
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- "name": "samples",
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- "type": "(JexlString | frozen)"
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- },
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  {
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  "name": "bigBedLocation",
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  "type": "(JexlString | (LocalPathLocation | UriLocation | BlobLocation | FileHandleLocation))"
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  },
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+ {
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+ "name": "samples",
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+ "type": "(JexlString | frozen)"
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+ },
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  {
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  "name": "nhLocation",
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  "type": "(JexlString | (LocalPathLocation | UriLocation | BlobLocation | FileHandleLocation))"
@@ -1141,10 +1143,6 @@ export const configManifest = {
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  "name": "type",
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  "type": "\"MafTabixAdapter\""
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  },
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- {
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- "name": "samples",
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- "type": "(JexlString | frozen)"
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- },
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  {
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  "name": "bedGzLocation",
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  "type": "(JexlString | (LocalPathLocation | UriLocation | BlobLocation | FileHandleLocation))"
@@ -1167,6 +1165,10 @@ export const configManifest = {
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  }
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  ]
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  },
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+ {
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+ "name": "samples",
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+ "type": "(JexlString | frozen)"
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+ },
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  {
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  "name": "nhLocation",
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  "type": "(JexlString | (LocalPathLocation | UriLocation | BlobLocation | FileHandleLocation))"
@@ -1203,11 +1205,11 @@ export const configManifest = {
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  "baseUri"
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  ]
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  },
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- "AllVsAllPAFAdapter": {
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+ "MultiGenomePAFAdapter": {
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  "slots": [
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  {
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  "name": "type",
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- "type": "\"AllVsAllPAFAdapter\""
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+ "type": "\"MultiGenomePAFAdapter\""
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  },
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  {
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  "name": "assemblyNames",
@@ -1225,13 +1227,16 @@ export const configManifest = {
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  "shorthandKeys": [
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  "uri",
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  "baseUri"
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+ ],
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+ "aliases": [
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+ "AllVsAllPAFAdapter"
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  ]
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  },
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- "AllVsAllIndexedPAFAdapter": {
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+ "MultiGenomeIndexedPAFAdapter": {
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  "slots": [
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  {
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  "name": "type",
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- "type": "\"AllVsAllIndexedPAFAdapter\""
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+ "type": "\"MultiGenomeIndexedPAFAdapter\""
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  },
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  {
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  "name": "assemblyNames",
@@ -1268,6 +1273,9 @@ export const configManifest = {
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  "uri",
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  "baseUri",
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  "csi"
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+ ],
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+ "aliases": [
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+ "AllVsAllIndexedPAFAdapter"
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  ]
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  },
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  "PAFAdapter": {
@@ -1345,6 +1353,23 @@ export const configManifest = {
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  "csi"
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  ]
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  },
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+ "MultiPairwiseSyntenyAdapter": {
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+ "slots": [
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+ {
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+ "name": "type",
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+ "type": "\"MultiPairwiseSyntenyAdapter\""
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+ },
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+ {
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+ "name": "adapters",
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+ "type": "(JexlString | frozen)"
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+ },
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+ {
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+ "name": "coarseBpPerPxThreshold",
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+ "type": "(JexlString | number)"
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+ }
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+ ],
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+ "shorthandKeys": []
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+ },
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  "DeltaAdapter": {
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  "slots": [
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  {
@@ -1651,7 +1676,7 @@ export const configManifest = {
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  },
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  {
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  "name": "adapter",
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- "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | AllVsAllPAFAdapterConfigurationSchema | AllVsAllIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
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+ "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | MultiGenomePAFAdapterConfigurationSchema | MultiGenomeIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | MultiPairwiseSyntenyAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
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  },
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  {
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  "name": "textSearching",
@@ -1677,7 +1702,7 @@ export const configManifest = {
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  },
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  {
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  "name": "displays",
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- "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
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+ "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
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  },
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  {
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  "name": "formatDetails",
@@ -1754,7 +1779,7 @@ export const configManifest = {
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  },
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  {
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  "name": "adapter",
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- "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | AllVsAllPAFAdapterConfigurationSchema | AllVsAllIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
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+ "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | MultiGenomePAFAdapterConfigurationSchema | MultiGenomeIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | MultiPairwiseSyntenyAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
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  },
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  {
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  "name": "textSearching",
@@ -1780,7 +1805,7 @@ export const configManifest = {
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  },
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  {
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  "name": "displays",
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- "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
1808
+ "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
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  },
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  {
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  "name": "formatDetails",
@@ -1855,7 +1880,7 @@ export const configManifest = {
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  },
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  {
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  "name": "adapter",
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- "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | AllVsAllPAFAdapterConfigurationSchema | AllVsAllIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
1883
+ "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | MultiGenomePAFAdapterConfigurationSchema | MultiGenomeIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | MultiPairwiseSyntenyAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
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  },
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  {
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  "name": "textSearching",
@@ -1881,7 +1906,7 @@ export const configManifest = {
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  },
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  {
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  "name": "displays",
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- "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
1909
+ "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
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  },
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  {
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  "name": "formatDetails",
@@ -1939,11 +1964,11 @@ export const configManifest = {
1939
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  },
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  {
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  "name": "adapter",
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- "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | AllVsAllPAFAdapterConfigurationSchema | AllVsAllIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
1967
+ "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | MultiGenomePAFAdapterConfigurationSchema | MultiGenomeIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | MultiPairwiseSyntenyAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
1943
1968
  },
1944
1969
  {
1945
1970
  "name": "displays",
1946
- "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
1971
+ "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
1947
1972
  },
1948
1973
  {
1949
1974
  "name": "name",
@@ -2013,7 +2038,7 @@ export const configManifest = {
2013
2038
  },
2014
2039
  {
2015
2040
  "name": "adapter",
2016
- "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | AllVsAllPAFAdapterConfigurationSchema | AllVsAllIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
2041
+ "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | MultiGenomePAFAdapterConfigurationSchema | MultiGenomeIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | MultiPairwiseSyntenyAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
2017
2042
  },
2018
2043
  {
2019
2044
  "name": "textSearching",
@@ -2039,7 +2064,7 @@ export const configManifest = {
2039
2064
  },
2040
2065
  {
2041
2066
  "name": "displays",
2042
- "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
2067
+ "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
2043
2068
  },
2044
2069
  {
2045
2070
  "name": "formatDetails",
@@ -2083,7 +2108,6 @@ export const configManifest = {
2083
2108
  "LinearVariantDisplay",
2084
2109
  "LinearMultiSampleVariantDisplay",
2085
2110
  "LinearMultiSampleVariantMatrixDisplay",
2086
- "LDDisplay",
2087
2111
  "LinearPairedArcDisplay"
2088
2112
  ]
2089
2113
  },
@@ -2119,7 +2143,7 @@ export const configManifest = {
2119
2143
  },
2120
2144
  {
2121
2145
  "name": "adapter",
2122
- "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | AllVsAllPAFAdapterConfigurationSchema | AllVsAllIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
2146
+ "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | MultiGenomePAFAdapterConfigurationSchema | MultiGenomeIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | MultiPairwiseSyntenyAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
2123
2147
  },
2124
2148
  {
2125
2149
  "name": "textSearching",
@@ -2145,7 +2169,7 @@ export const configManifest = {
2145
2169
  },
2146
2170
  {
2147
2171
  "name": "displays",
2148
- "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
2172
+ "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
2149
2173
  },
2150
2174
  {
2151
2175
  "name": "formatDetails",
@@ -2220,7 +2244,7 @@ export const configManifest = {
2220
2244
  },
2221
2245
  {
2222
2246
  "name": "adapter",
2223
- "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | AllVsAllPAFAdapterConfigurationSchema | AllVsAllIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
2247
+ "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | MultiGenomePAFAdapterConfigurationSchema | MultiGenomeIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | MultiPairwiseSyntenyAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
2224
2248
  },
2225
2249
  {
2226
2250
  "name": "textSearching",
@@ -2246,7 +2270,7 @@ export const configManifest = {
2246
2270
  },
2247
2271
  {
2248
2272
  "name": "displays",
2249
- "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
2273
+ "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
2250
2274
  },
2251
2275
  {
2252
2276
  "name": "formatDetails",
@@ -2321,7 +2345,7 @@ export const configManifest = {
2321
2345
  },
2322
2346
  {
2323
2347
  "name": "adapter",
2324
- "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | AllVsAllPAFAdapterConfigurationSchema | AllVsAllIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
2348
+ "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | MultiGenomePAFAdapterConfigurationSchema | MultiGenomeIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | MultiPairwiseSyntenyAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
2325
2349
  },
2326
2350
  {
2327
2351
  "name": "textSearching",
@@ -2347,7 +2371,7 @@ export const configManifest = {
2347
2371
  },
2348
2372
  {
2349
2373
  "name": "displays",
2350
- "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
2374
+ "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
2351
2375
  },
2352
2376
  {
2353
2377
  "name": "formatDetails",
@@ -2422,7 +2446,7 @@ export const configManifest = {
2422
2446
  },
2423
2447
  {
2424
2448
  "name": "adapter",
2425
- "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | AllVsAllPAFAdapterConfigurationSchema | AllVsAllIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
2449
+ "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | MultiGenomePAFAdapterConfigurationSchema | MultiGenomeIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | MultiPairwiseSyntenyAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
2426
2450
  },
2427
2451
  {
2428
2452
  "name": "textSearching",
@@ -2448,7 +2472,7 @@ export const configManifest = {
2448
2472
  },
2449
2473
  {
2450
2474
  "name": "displays",
2451
- "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
2475
+ "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
2452
2476
  },
2453
2477
  {
2454
2478
  "name": "formatDetails",
@@ -2523,7 +2547,7 @@ export const configManifest = {
2523
2547
  },
2524
2548
  {
2525
2549
  "name": "adapter",
2526
- "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | AllVsAllPAFAdapterConfigurationSchema | AllVsAllIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
2550
+ "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | MultiGenomePAFAdapterConfigurationSchema | MultiGenomeIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | MultiPairwiseSyntenyAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
2527
2551
  },
2528
2552
  {
2529
2553
  "name": "textSearching",
@@ -2549,7 +2573,7 @@ export const configManifest = {
2549
2573
  },
2550
2574
  {
2551
2575
  "name": "displays",
2552
- "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
2576
+ "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
2553
2577
  },
2554
2578
  {
2555
2579
  "name": "formatDetails",
@@ -2624,7 +2648,7 @@ export const configManifest = {
2624
2648
  },
2625
2649
  {
2626
2650
  "name": "adapter",
2627
- "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | AllVsAllPAFAdapterConfigurationSchema | AllVsAllIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
2651
+ "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | MultiGenomePAFAdapterConfigurationSchema | MultiGenomeIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | MultiPairwiseSyntenyAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
2628
2652
  },
2629
2653
  {
2630
2654
  "name": "textSearching",
@@ -2650,7 +2674,7 @@ export const configManifest = {
2650
2674
  },
2651
2675
  {
2652
2676
  "name": "displays",
2653
- "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
2677
+ "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
2654
2678
  },
2655
2679
  {
2656
2680
  "name": "formatDetails",
@@ -2725,7 +2749,7 @@ export const configManifest = {
2725
2749
  },
2726
2750
  {
2727
2751
  "name": "adapter",
2728
- "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | AllVsAllPAFAdapterConfigurationSchema | AllVsAllIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
2752
+ "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | MultiGenomePAFAdapterConfigurationSchema | MultiGenomeIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | MultiPairwiseSyntenyAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
2729
2753
  },
2730
2754
  {
2731
2755
  "name": "textSearching",
@@ -2751,7 +2775,7 @@ export const configManifest = {
2751
2775
  },
2752
2776
  {
2753
2777
  "name": "displays",
2754
- "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
2778
+ "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
2755
2779
  },
2756
2780
  {
2757
2781
  "name": "formatDetails",
@@ -2806,10 +2830,6 @@ export const configManifest = {
2806
2830
  "name": "displayId",
2807
2831
  "type": "identifier"
2808
2832
  },
2809
- {
2810
- "name": "maxFeatureScreenDensity",
2811
- "type": "(JexlString | number)"
2812
- },
2813
2833
  {
2814
2834
  "name": "fetchSizeLimit",
2815
2835
  "type": "(JexlString | number)"
@@ -2818,14 +2838,6 @@ export const configManifest = {
2818
2838
  "name": "forceLoad",
2819
2839
  "type": "(JexlString | boolean)"
2820
2840
  },
2821
- {
2822
- "name": "densityTier",
2823
- "type": "(JexlString | Density tier)"
2824
- },
2825
- {
2826
- "name": "densityTierBpPerPx",
2827
- "type": "(JexlString | number)"
2828
- },
2829
2841
  {
2830
2842
  "name": "height",
2831
2843
  "type": "(JexlString | number)"
@@ -2846,6 +2858,18 @@ export const configManifest = {
2846
2858
  "name": "growMaxHeight",
2847
2859
  "type": "(JexlString | number)"
2848
2860
  },
2861
+ {
2862
+ "name": "densityTier",
2863
+ "type": "(JexlString | Density tier)"
2864
+ },
2865
+ {
2866
+ "name": "densityTierBpPerPx",
2867
+ "type": "(JexlString | number)"
2868
+ },
2869
+ {
2870
+ "name": "maxFeatureScreenDensity",
2871
+ "type": "(JexlString | number)"
2872
+ },
2849
2873
  {
2850
2874
  "name": "showLegend",
2851
2875
  "type": "(JexlString | (boolean | undefined))"
@@ -2984,10 +3008,6 @@ export const configManifest = {
2984
3008
  "name": "displayId",
2985
3009
  "type": "identifier"
2986
3010
  },
2987
- {
2988
- "name": "maxFeatureScreenDensity",
2989
- "type": "(JexlString | number)"
2990
- },
2991
3011
  {
2992
3012
  "name": "fetchSizeLimit",
2993
3013
  "type": "(JexlString | number)"
@@ -2996,14 +3016,6 @@ export const configManifest = {
2996
3016
  "name": "forceLoad",
2997
3017
  "type": "(JexlString | boolean)"
2998
3018
  },
2999
- {
3000
- "name": "densityTier",
3001
- "type": "(JexlString | Density tier)"
3002
- },
3003
- {
3004
- "name": "densityTierBpPerPx",
3005
- "type": "(JexlString | number)"
3006
- },
3007
3019
  {
3008
3020
  "name": "height",
3009
3021
  "type": "(JexlString | number)"
@@ -3048,6 +3060,14 @@ export const configManifest = {
3048
3060
  "name": "showRowSeparators",
3049
3061
  "type": "(JexlString | boolean)"
3050
3062
  },
3063
+ {
3064
+ "name": "densityTier",
3065
+ "type": "(JexlString | Density tier)"
3066
+ },
3067
+ {
3068
+ "name": "densityTierBpPerPx",
3069
+ "type": "(JexlString | number)"
3070
+ },
3051
3071
  {
3052
3072
  "name": "colorRowLabels",
3053
3073
  "type": "(JexlString | boolean)"
@@ -3102,10 +3122,6 @@ export const configManifest = {
3102
3122
  "name": "displayId",
3103
3123
  "type": "identifier"
3104
3124
  },
3105
- {
3106
- "name": "maxFeatureScreenDensity",
3107
- "type": "(JexlString | number)"
3108
- },
3109
3125
  {
3110
3126
  "name": "fetchSizeLimit",
3111
3127
  "type": "(JexlString | number)"
@@ -3114,14 +3130,6 @@ export const configManifest = {
3114
3130
  "name": "forceLoad",
3115
3131
  "type": "(JexlString | boolean)"
3116
3132
  },
3117
- {
3118
- "name": "densityTier",
3119
- "type": "(JexlString | Density tier)"
3120
- },
3121
- {
3122
- "name": "densityTierBpPerPx",
3123
- "type": "(JexlString | number)"
3124
- },
3125
3133
  {
3126
3134
  "name": "height",
3127
3135
  "type": "(JexlString | number)"
@@ -3146,6 +3154,14 @@ export const configManifest = {
3146
3154
  "name": "growMaxHeight",
3147
3155
  "type": "(JexlString | number)"
3148
3156
  },
3157
+ {
3158
+ "name": "densityTier",
3159
+ "type": "(JexlString | Density tier)"
3160
+ },
3161
+ {
3162
+ "name": "densityTierBpPerPx",
3163
+ "type": "(JexlString | number)"
3164
+ },
3149
3165
  {
3150
3166
  "name": "readConnectionsLineWidth",
3151
3167
  "type": "(JexlString | number)"
@@ -3424,10 +3440,6 @@ export const configManifest = {
3424
3440
  "name": "displayId",
3425
3441
  "type": "identifier"
3426
3442
  },
3427
- {
3428
- "name": "maxFeatureScreenDensity",
3429
- "type": "(JexlString | number)"
3430
- },
3431
3443
  {
3432
3444
  "name": "fetchSizeLimit",
3433
3445
  "type": "(JexlString | number)"
@@ -3436,14 +3448,6 @@ export const configManifest = {
3436
3448
  "name": "forceLoad",
3437
3449
  "type": "(JexlString | boolean)"
3438
3450
  },
3439
- {
3440
- "name": "densityTier",
3441
- "type": "(JexlString | Density tier)"
3442
- },
3443
- {
3444
- "name": "densityTierBpPerPx",
3445
- "type": "(JexlString | number)"
3446
- },
3447
3451
  {
3448
3452
  "name": "height",
3449
3453
  "type": "(JexlString | number)"
@@ -3468,6 +3472,14 @@ export const configManifest = {
3468
3472
  "name": "growMaxHeight",
3469
3473
  "type": "(JexlString | number)"
3470
3474
  },
3475
+ {
3476
+ "name": "densityTier",
3477
+ "type": "(JexlString | Density tier)"
3478
+ },
3479
+ {
3480
+ "name": "densityTierBpPerPx",
3481
+ "type": "(JexlString | number)"
3482
+ },
3471
3483
  {
3472
3484
  "name": "readConnectionsLineWidth",
3473
3485
  "type": "(JexlString | number)"
@@ -3666,10 +3678,6 @@ export const configManifest = {
3666
3678
  "name": "displayId",
3667
3679
  "type": "identifier"
3668
3680
  },
3669
- {
3670
- "name": "maxFeatureScreenDensity",
3671
- "type": "(JexlString | number)"
3672
- },
3673
3681
  {
3674
3682
  "name": "fetchSizeLimit",
3675
3683
  "type": "(JexlString | number)"
@@ -3678,14 +3686,6 @@ export const configManifest = {
3678
3686
  "name": "forceLoad",
3679
3687
  "type": "(JexlString | boolean)"
3680
3688
  },
3681
- {
3682
- "name": "densityTier",
3683
- "type": "(JexlString | Density tier)"
3684
- },
3685
- {
3686
- "name": "densityTierBpPerPx",
3687
- "type": "(JexlString | number)"
3688
- },
3689
3689
  {
3690
3690
  "name": "height",
3691
3691
  "type": "(JexlString | number)"
@@ -3712,7 +3712,7 @@ export const configManifest = {
3712
3712
  },
3713
3713
  {
3714
3714
  "name": "ribbonColorBy",
3715
- "type": "(JexlString | ribbonColorBy)"
3715
+ "type": "(JexlString | string)"
3716
3716
  },
3717
3717
  {
3718
3718
  "name": "drawCurves",
@@ -3722,17 +3722,27 @@ export const configManifest = {
3722
3722
  "name": "bridgeSkippedLanes",
3723
3723
  "type": "(JexlString | boolean)"
3724
3724
  },
3725
+ {
3726
+ "name": "showLegend",
3727
+ "type": "(JexlString | (boolean | undefined))"
3728
+ },
3725
3729
  {
3726
3730
  "name": "showLaneTicks",
3727
3731
  "type": "(JexlString | boolean)"
3732
+ },
3733
+ {
3734
+ "name": "lanes",
3735
+ "type": "(JexlString | string[])"
3728
3736
  }
3729
3737
  ],
3730
3738
  "stateModelProps": [
3731
3739
  "id",
3732
3740
  "type",
3733
3741
  "configuration",
3742
+ "lodMode",
3734
3743
  "rowOrder",
3735
- "hiddenLanes"
3744
+ "hiddenLanes",
3745
+ "selectedLanes"
3736
3746
  ]
3737
3747
  },
3738
3748
  "LinearReferenceSequenceDisplay": {
@@ -3786,10 +3796,6 @@ export const configManifest = {
3786
3796
  "name": "displayId",
3787
3797
  "type": "identifier"
3788
3798
  },
3789
- {
3790
- "name": "maxFeatureScreenDensity",
3791
- "type": "(JexlString | number)"
3792
- },
3793
3799
  {
3794
3800
  "name": "fetchSizeLimit",
3795
3801
  "type": "(JexlString | number)"
@@ -3798,14 +3804,6 @@ export const configManifest = {
3798
3804
  "name": "forceLoad",
3799
3805
  "type": "(JexlString | boolean)"
3800
3806
  },
3801
- {
3802
- "name": "densityTier",
3803
- "type": "(JexlString | Density tier)"
3804
- },
3805
- {
3806
- "name": "densityTierBpPerPx",
3807
- "type": "(JexlString | number)"
3808
- },
3809
3807
  {
3810
3808
  "name": "height",
3811
3809
  "type": "(JexlString | number)"
@@ -3826,6 +3824,18 @@ export const configManifest = {
3826
3824
  "name": "growMaxHeight",
3827
3825
  "type": "(JexlString | number)"
3828
3826
  },
3827
+ {
3828
+ "name": "densityTier",
3829
+ "type": "(JexlString | Density tier)"
3830
+ },
3831
+ {
3832
+ "name": "densityTierBpPerPx",
3833
+ "type": "(JexlString | number)"
3834
+ },
3835
+ {
3836
+ "name": "maxFeatureScreenDensity",
3837
+ "type": "(JexlString | number)"
3838
+ },
3829
3839
  {
3830
3840
  "name": "showLegend",
3831
3841
  "type": "(JexlString | (boolean | undefined))"
@@ -3953,10 +3963,6 @@ export const configManifest = {
3953
3963
  "name": "displayId",
3954
3964
  "type": "identifier"
3955
3965
  },
3956
- {
3957
- "name": "maxFeatureScreenDensity",
3958
- "type": "(JexlString | number)"
3959
- },
3960
3966
  {
3961
3967
  "name": "fetchSizeLimit",
3962
3968
  "type": "(JexlString | number)"
@@ -3965,14 +3971,6 @@ export const configManifest = {
3965
3971
  "name": "forceLoad",
3966
3972
  "type": "(JexlString | boolean)"
3967
3973
  },
3968
- {
3969
- "name": "densityTier",
3970
- "type": "(JexlString | Density tier)"
3971
- },
3972
- {
3973
- "name": "densityTierBpPerPx",
3974
- "type": "(JexlString | number)"
3975
- },
3976
3974
  {
3977
3975
  "name": "height",
3978
3976
  "type": "(JexlString | number)"
@@ -3985,10 +3983,6 @@ export const configManifest = {
3985
3983
  "name": "jexlFilters",
3986
3984
  "type": "(JexlString | string[])"
3987
3985
  },
3988
- {
3989
- "name": "showReferenceAlleles",
3990
- "type": "(JexlString | boolean)"
3991
- },
3992
3986
  {
3993
3987
  "name": "lineZoneHeight",
3994
3988
  "type": "(JexlString | number)"
@@ -4094,10 +4088,6 @@ export const configManifest = {
4094
4088
  "name": "displayId",
4095
4089
  "type": "identifier"
4096
4090
  },
4097
- {
4098
- "name": "maxFeatureScreenDensity",
4099
- "type": "(JexlString | number)"
4100
- },
4101
4091
  {
4102
4092
  "name": "fetchSizeLimit",
4103
4093
  "type": "(JexlString | number)"
@@ -4106,14 +4096,6 @@ export const configManifest = {
4106
4096
  "name": "forceLoad",
4107
4097
  "type": "(JexlString | boolean)"
4108
4098
  },
4109
- {
4110
- "name": "densityTier",
4111
- "type": "(JexlString | Density tier)"
4112
- },
4113
- {
4114
- "name": "densityTierBpPerPx",
4115
- "type": "(JexlString | number)"
4116
- },
4117
4099
  {
4118
4100
  "name": "height",
4119
4101
  "type": "(JexlString | number)"
@@ -4126,10 +4108,6 @@ export const configManifest = {
4126
4108
  "name": "jexlFilters",
4127
4109
  "type": "(JexlString | string[])"
4128
4110
  },
4129
- {
4130
- "name": "showReferenceAlleles",
4131
- "type": "(JexlString | boolean)"
4132
- },
4133
4111
  {
4134
4112
  "name": "lineZoneHeight",
4135
4113
  "type": "(JexlString | number)"
@@ -4209,20 +4187,16 @@ export const configManifest = {
4209
4187
  "jexlFiltersSetting"
4210
4188
  ]
4211
4189
  },
4212
- "LDDisplay": {
4190
+ "LDTrackDisplay": {
4213
4191
  "slots": [
4214
4192
  {
4215
4193
  "name": "type",
4216
- "type": "\"LDDisplay\""
4194
+ "type": "\"LDTrackDisplay\""
4217
4195
  },
4218
4196
  {
4219
4197
  "name": "displayId",
4220
4198
  "type": "identifier"
4221
4199
  },
4222
- {
4223
- "name": "maxFeatureScreenDensity",
4224
- "type": "(JexlString | number)"
4225
- },
4226
4200
  {
4227
4201
  "name": "fetchSizeLimit",
4228
4202
  "type": "(JexlString | number)"
@@ -4231,14 +4205,6 @@ export const configManifest = {
4231
4205
  "name": "forceLoad",
4232
4206
  "type": "(JexlString | boolean)"
4233
4207
  },
4234
- {
4235
- "name": "densityTier",
4236
- "type": "(JexlString | Density tier)"
4237
- },
4238
- {
4239
- "name": "densityTierBpPerPx",
4240
- "type": "(JexlString | number)"
4241
- },
4242
4208
  {
4243
4209
  "name": "height",
4244
4210
  "type": "(JexlString | number)"
@@ -4251,14 +4217,6 @@ export const configManifest = {
4251
4217
  "name": "jexlFilters",
4252
4218
  "type": "(JexlString | string[])"
4253
4219
  },
4254
- {
4255
- "name": "minorAlleleFrequencyFilter",
4256
- "type": "(JexlString | number)"
4257
- },
4258
- {
4259
- "name": "lengthCutoffFilter",
4260
- "type": "(JexlString | number)"
4261
- },
4262
4220
  {
4263
4221
  "name": "lineZoneHeight",
4264
4222
  "type": "(JexlString | number)"
@@ -4279,14 +4237,6 @@ export const configManifest = {
4279
4237
  "name": "squashToHeight",
4280
4238
  "type": "(JexlString | boolean)"
4281
4239
  },
4282
- {
4283
- "name": "hweFilterThreshold",
4284
- "type": "(JexlString | number)"
4285
- },
4286
- {
4287
- "name": "callRateFilter",
4288
- "type": "(JexlString | number)"
4289
- },
4290
4240
  {
4291
4241
  "name": "maxVariantSeparation",
4292
4242
  "type": "(JexlString | number)"
@@ -4306,142 +4256,19 @@ export const configManifest = {
4306
4256
  {
4307
4257
  "name": "useGenomicPositions",
4308
4258
  "type": "(JexlString | boolean)"
4309
- },
4310
- {
4311
- "name": "signedLD",
4312
- "type": "(JexlString | boolean)"
4313
- },
4314
- {
4315
- "name": "ldMethod",
4316
- "type": "(JexlString | LDMethod)"
4317
4259
  }
4318
4260
  ],
4319
4261
  "stateModelProps": [
4320
4262
  "id",
4321
4263
  "type",
4322
- "configuration",
4323
- "jexlFiltersSetting"
4264
+ "configuration"
4324
4265
  ]
4325
4266
  },
4326
- "LDTrackDisplay": {
4267
+ "LinearWiggleDisplay": {
4327
4268
  "slots": [
4328
4269
  {
4329
4270
  "name": "type",
4330
- "type": "\"LDTrackDisplay\""
4331
- },
4332
- {
4333
- "name": "displayId",
4334
- "type": "identifier"
4335
- },
4336
- {
4337
- "name": "maxFeatureScreenDensity",
4338
- "type": "(JexlString | number)"
4339
- },
4340
- {
4341
- "name": "fetchSizeLimit",
4342
- "type": "(JexlString | number)"
4343
- },
4344
- {
4345
- "name": "forceLoad",
4346
- "type": "(JexlString | boolean)"
4347
- },
4348
- {
4349
- "name": "densityTier",
4350
- "type": "(JexlString | Density tier)"
4351
- },
4352
- {
4353
- "name": "densityTierBpPerPx",
4354
- "type": "(JexlString | number)"
4355
- },
4356
- {
4357
- "name": "height",
4358
- "type": "(JexlString | number)"
4359
- },
4360
- {
4361
- "name": "mouseover",
4362
- "type": "(JexlString | string)"
4363
- },
4364
- {
4365
- "name": "jexlFilters",
4366
- "type": "(JexlString | string[])"
4367
- },
4368
- {
4369
- "name": "minorAlleleFrequencyFilter",
4370
- "type": "(JexlString | number)"
4371
- },
4372
- {
4373
- "name": "lengthCutoffFilter",
4374
- "type": "(JexlString | number)"
4375
- },
4376
- {
4377
- "name": "lineZoneHeight",
4378
- "type": "(JexlString | number)"
4379
- },
4380
- {
4381
- "name": "ldMetric",
4382
- "type": "(JexlString | LDMetric)"
4383
- },
4384
- {
4385
- "name": "showLegend",
4386
- "type": "(JexlString | (boolean | undefined))"
4387
- },
4388
- {
4389
- "name": "showLDTriangle",
4390
- "type": "(JexlString | boolean)"
4391
- },
4392
- {
4393
- "name": "squashToHeight",
4394
- "type": "(JexlString | boolean)"
4395
- },
4396
- {
4397
- "name": "hweFilterThreshold",
4398
- "type": "(JexlString | number)"
4399
- },
4400
- {
4401
- "name": "callRateFilter",
4402
- "type": "(JexlString | number)"
4403
- },
4404
- {
4405
- "name": "maxVariantSeparation",
4406
- "type": "(JexlString | number)"
4407
- },
4408
- {
4409
- "name": "showVerticalGuides",
4410
- "type": "(JexlString | boolean)"
4411
- },
4412
- {
4413
- "name": "showLabels",
4414
- "type": "(JexlString | boolean)"
4415
- },
4416
- {
4417
- "name": "tickHeight",
4418
- "type": "(JexlString | number)"
4419
- },
4420
- {
4421
- "name": "useGenomicPositions",
4422
- "type": "(JexlString | boolean)"
4423
- },
4424
- {
4425
- "name": "signedLD",
4426
- "type": "(JexlString | boolean)"
4427
- },
4428
- {
4429
- "name": "ldMethod",
4430
- "type": "(JexlString | LDMethod)"
4431
- }
4432
- ],
4433
- "stateModelProps": [
4434
- "id",
4435
- "type",
4436
- "configuration",
4437
- "jexlFiltersSetting"
4438
- ]
4439
- },
4440
- "LinearWiggleDisplay": {
4441
- "slots": [
4442
- {
4443
- "name": "type",
4444
- "type": "\"LinearWiggleDisplay\""
4271
+ "type": "\"LinearWiggleDisplay\""
4445
4272
  },
4446
4273
  {
4447
4274
  "name": "displayId",
@@ -4534,14 +4361,6 @@ export const configManifest = {
4534
4361
  {
4535
4362
  "name": "summaryScoreMode",
4536
4363
  "type": "(JexlString | Score type)"
4537
- },
4538
- {
4539
- "name": "fetchSizeLimit",
4540
- "type": "(JexlString | number)"
4541
- },
4542
- {
4543
- "name": "forceLoad",
4544
- "type": "(JexlString | boolean)"
4545
4364
  }
4546
4365
  ],
4547
4366
  "stateModelProps": [
@@ -4656,14 +4475,6 @@ export const configManifest = {
4656
4475
  {
4657
4476
  "name": "showLegend",
4658
4477
  "type": "(JexlString | (boolean | undefined))"
4659
- },
4660
- {
4661
- "name": "fetchSizeLimit",
4662
- "type": "(JexlString | number)"
4663
- },
4664
- {
4665
- "name": "forceLoad",
4666
- "type": "(JexlString | boolean)"
4667
4478
  }
4668
4479
  ],
4669
4480
  "stateModelProps": [
@@ -4779,14 +4590,6 @@ export const configManifest = {
4779
4590
  "name": "summaryScoreMode",
4780
4591
  "type": "(JexlString | Score type)"
4781
4592
  },
4782
- {
4783
- "name": "fetchSizeLimit",
4784
- "type": "(JexlString | number)"
4785
- },
4786
- {
4787
- "name": "forceLoad",
4788
- "type": "(JexlString | boolean)"
4789
- },
4790
4593
  {
4791
4594
  "name": "windowSize",
4792
4595
  "type": "(JexlString | number)"
@@ -4905,14 +4708,6 @@ export const configManifest = {
4905
4708
  "name": "summaryScoreMode",
4906
4709
  "type": "(JexlString | Score type)"
4907
4710
  },
4908
- {
4909
- "name": "fetchSizeLimit",
4910
- "type": "(JexlString | number)"
4911
- },
4912
- {
4913
- "name": "forceLoad",
4914
- "type": "(JexlString | boolean)"
4915
- },
4916
4711
  {
4917
4712
  "name": "windowSize",
4918
4713
  "type": "(JexlString | number)"
@@ -4943,10 +4738,6 @@ export const configManifest = {
4943
4738
  "name": "displayId",
4944
4739
  "type": "identifier"
4945
4740
  },
4946
- {
4947
- "name": "maxFeatureScreenDensity",
4948
- "type": "(JexlString | number)"
4949
- },
4950
4741
  {
4951
4742
  "name": "fetchSizeLimit",
4952
4743
  "type": "(JexlString | number)"
@@ -4955,14 +4746,6 @@ export const configManifest = {
4955
4746
  "name": "forceLoad",
4956
4747
  "type": "(JexlString | boolean)"
4957
4748
  },
4958
- {
4959
- "name": "densityTier",
4960
- "type": "(JexlString | Density tier)"
4961
- },
4962
- {
4963
- "name": "densityTierBpPerPx",
4964
- "type": "(JexlString | number)"
4965
- },
4966
4749
  {
4967
4750
  "name": "height",
4968
4751
  "type": "(JexlString | (number | undefined))"
@@ -5055,6 +4838,10 @@ export const configManifest = {
5055
4838
  "name": "colorByChromosome",
5056
4839
  "type": "(JexlString | boolean)"
5057
4840
  },
4841
+ {
4842
+ "name": "showReferenceRow",
4843
+ "type": "(JexlString | boolean)"
4844
+ },
5058
4845
  {
5059
4846
  "name": "showInversions",
5060
4847
  "type": "(JexlString | boolean)"
@@ -5084,38 +4871,10 @@ export const configManifest = {
5084
4871
  "name": "displayId",
5085
4872
  "type": "identifier"
5086
4873
  },
5087
- {
5088
- "name": "maxFeatureScreenDensity",
5089
- "type": "(JexlString | number)"
5090
- },
5091
- {
5092
- "name": "fetchSizeLimit",
5093
- "type": "(JexlString | number)"
5094
- },
5095
- {
5096
- "name": "forceLoad",
5097
- "type": "(JexlString | boolean)"
5098
- },
5099
- {
5100
- "name": "densityTier",
5101
- "type": "(JexlString | Density tier)"
5102
- },
5103
- {
5104
- "name": "densityTierBpPerPx",
5105
- "type": "(JexlString | number)"
5106
- },
5107
4874
  {
5108
4875
  "name": "height",
5109
4876
  "type": "(JexlString | number)"
5110
4877
  },
5111
- {
5112
- "name": "mouseover",
5113
- "type": "(JexlString | string)"
5114
- },
5115
- {
5116
- "name": "jexlFilters",
5117
- "type": "(JexlString | string[])"
5118
- },
5119
4878
  {
5120
4879
  "name": "colorScheme",
5121
4880
  "type": "(JexlString | HicColorScheme)"
@@ -5165,38 +4924,10 @@ export const configManifest = {
5165
4924
  "name": "displayId",
5166
4925
  "type": "identifier"
5167
4926
  },
5168
- {
5169
- "name": "maxFeatureScreenDensity",
5170
- "type": "(JexlString | number)"
5171
- },
5172
- {
5173
- "name": "fetchSizeLimit",
5174
- "type": "(JexlString | number)"
5175
- },
5176
- {
5177
- "name": "forceLoad",
5178
- "type": "(JexlString | boolean)"
5179
- },
5180
- {
5181
- "name": "densityTier",
5182
- "type": "(JexlString | Density tier)"
5183
- },
5184
- {
5185
- "name": "densityTierBpPerPx",
5186
- "type": "(JexlString | number)"
5187
- },
5188
4927
  {
5189
4928
  "name": "height",
5190
4929
  "type": "(JexlString | number)"
5191
4930
  },
5192
- {
5193
- "name": "mouseover",
5194
- "type": "(JexlString | string)"
5195
- },
5196
- {
5197
- "name": "jexlFilters",
5198
- "type": "(JexlString | string[])"
5199
- },
5200
4931
  {
5201
4932
  "name": "color",
5202
4933
  "type": "(JexlString | string)"
@@ -5224,6 +4955,14 @@ export const configManifest = {
5224
4955
  {
5225
4956
  "name": "minScore",
5226
4957
  "type": "(JexlString | number)"
4958
+ },
4959
+ {
4960
+ "name": "fetchSizeLimit",
4961
+ "type": "(JexlString | number)"
4962
+ },
4963
+ {
4964
+ "name": "forceLoad",
4965
+ "type": "(JexlString | boolean)"
5227
4966
  }
5228
4967
  ],
5229
4968
  "legacyKeys": [
@@ -5245,38 +4984,10 @@ export const configManifest = {
5245
4984
  "name": "displayId",
5246
4985
  "type": "identifier"
5247
4986
  },
5248
- {
5249
- "name": "maxFeatureScreenDensity",
5250
- "type": "(JexlString | number)"
5251
- },
5252
- {
5253
- "name": "fetchSizeLimit",
5254
- "type": "(JexlString | number)"
5255
- },
5256
- {
5257
- "name": "forceLoad",
5258
- "type": "(JexlString | boolean)"
5259
- },
5260
- {
5261
- "name": "densityTier",
5262
- "type": "(JexlString | Density tier)"
5263
- },
5264
- {
5265
- "name": "densityTierBpPerPx",
5266
- "type": "(JexlString | number)"
5267
- },
5268
4987
  {
5269
4988
  "name": "height",
5270
4989
  "type": "(JexlString | number)"
5271
4990
  },
5272
- {
5273
- "name": "mouseover",
5274
- "type": "(JexlString | string)"
5275
- },
5276
- {
5277
- "name": "jexlFilters",
5278
- "type": "(JexlString | string[])"
5279
- },
5280
4991
  {
5281
4992
  "name": "color",
5282
4993
  "type": "(JexlString | string)"
@@ -5288,6 +4999,14 @@ export const configManifest = {
5288
4999
  {
5289
5000
  "name": "minScore",
5290
5001
  "type": "(JexlString | number)"
5002
+ },
5003
+ {
5004
+ "name": "fetchSizeLimit",
5005
+ "type": "(JexlString | number)"
5006
+ },
5007
+ {
5008
+ "name": "forceLoad",
5009
+ "type": "(JexlString | boolean)"
5291
5010
  }
5292
5011
  ],
5293
5012
  "stateModelProps": [
@@ -5306,38 +5025,10 @@ export const configManifest = {
5306
5025
  "name": "displayId",
5307
5026
  "type": "identifier"
5308
5027
  },
5309
- {
5310
- "name": "maxFeatureScreenDensity",
5311
- "type": "(JexlString | number)"
5312
- },
5313
- {
5314
- "name": "fetchSizeLimit",
5315
- "type": "(JexlString | number)"
5316
- },
5317
- {
5318
- "name": "forceLoad",
5319
- "type": "(JexlString | boolean)"
5320
- },
5321
- {
5322
- "name": "densityTier",
5323
- "type": "(JexlString | Density tier)"
5324
- },
5325
- {
5326
- "name": "densityTierBpPerPx",
5327
- "type": "(JexlString | number)"
5328
- },
5329
5028
  {
5330
5029
  "name": "height",
5331
5030
  "type": "(JexlString | number)"
5332
5031
  },
5333
- {
5334
- "name": "mouseover",
5335
- "type": "(JexlString | string)"
5336
- },
5337
- {
5338
- "name": "jexlFilters",
5339
- "type": "(JexlString | string[])"
5340
- },
5341
5032
  {
5342
5033
  "name": "color",
5343
5034
  "type": "(JexlString | string)"
@@ -5440,14 +5131,6 @@ export const configManifest = {
5440
5131
  "name": "ixxFilePath",
5441
5132
  "type": "(JexlString | (LocalPathLocation | UriLocation | BlobLocation | FileHandleLocation))"
5442
5133
  },
5443
- {
5444
- "name": "metaFilePath",
5445
- "type": "(JexlString | (LocalPathLocation | UriLocation | BlobLocation | FileHandleLocation))"
5446
- },
5447
- {
5448
- "name": "tracks",
5449
- "type": "(JexlString | string[])"
5450
- },
5451
5134
  {
5452
5135
  "name": "assemblyNames",
5453
5136
  "type": "(JexlString | string[])"
@@ -5613,9 +5296,8 @@ export const configManifest = {
5613
5296
  "highlight",
5614
5297
  "showHighlightChips",
5615
5298
  "colorBy",
5616
- "trackColorBy",
5617
5299
  "trackColors",
5618
- "showColorLegend",
5300
+ "hideUnlabelled",
5619
5301
  "type",
5620
5302
  "height",
5621
5303
  "trackSelectorType",
@@ -5655,12 +5337,10 @@ export const configManifest = {
5655
5337
  "levels",
5656
5338
  "views",
5657
5339
  "colorBy",
5658
- "trackColorBy",
5659
5340
  "trackColors",
5660
- "showColorLegend",
5341
+ "hideUnlabelled",
5661
5342
  "cigarMode",
5662
5343
  "showOffscreenMates",
5663
- "bidirectionalFetch",
5664
5344
  "overdrawPx",
5665
5345
  "alpha",
5666
5346
  "minAlignmentLength",