@jbrowse/cli 5.0.0-beta.1 → 5.0.0-beta.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (20) hide show
  1. package/README.md +115 -26
  2. package/dist/commands/add-track-utils/adapter-utils.js +49 -0
  3. package/dist/commands/add-track.js +29 -6
  4. package/dist/commands/admin-server/index.js +13 -5
  5. package/dist/commands/admin-server/utils.js +8 -6
  6. package/dist/commands/make-density/density-generator.js +180 -0
  7. package/dist/commands/make-density/index.js +139 -0
  8. package/dist/commands/make-pif/index.js +55 -25
  9. package/dist/commands/make-pif/pif-generator.js +105 -133
  10. package/dist/commands/shared/density.js +12 -0
  11. package/dist/commands/text-index/adapter-utils.js +0 -4
  12. package/dist/commands/validate/configManifest.generated.js +408 -357
  13. package/dist/commands/validate/index.js +5 -5
  14. package/dist/commands/validate/validateConfig.js +97 -32
  15. package/dist/index.js +5 -0
  16. package/dist/version.js +1 -1
  17. package/package.json +5 -9
  18. package/bin/run +0 -4
  19. package/bundle/index.js +0 -1569
  20. package/dist/commands/make-pif/cigar-utils.js +0 -67
package/dist/commands/validate/configManifest.generated.js CHANGED
@@ -26,6 +26,10 @@ export const configManifest = {
26
26
  "name": "fetchSizeLimit",
27
27
  "type": "(JexlString | number)"
28
28
  },
29
+ {
30
+ "name": "densityAdapter",
31
+ "type": "(JexlString | frozen)"
32
+ },
29
33
  {
30
34
  "name": "useSliceWorkerPool",
31
35
  "type": "(JexlString | boolean)"
@@ -71,6 +75,10 @@ export const configManifest = {
71
75
  {
72
76
  "name": "fetchSizeLimit",
73
77
  "type": "(JexlString | number)"
78
+ },
79
+ {
80
+ "name": "densityAdapter",
81
+ "type": "(JexlString | frozen)"
74
82
  }
75
83
  ],
76
84
  "shorthandKeys": [
@@ -112,6 +120,10 @@ export const configManifest = {
112
120
  {
113
121
  "name": "htsgetTrackId",
114
122
  "type": "(JexlString | string)"
123
+ },
124
+ {
125
+ "name": "densityAdapter",
126
+ "type": "(JexlString | frozen)"
115
127
  }
116
128
  ],
117
129
  "shorthandKeys": []
@@ -137,6 +149,10 @@ export const configManifest = {
137
149
  {
138
150
  "name": "disableGeneHeuristic",
139
151
  "type": "(JexlString | boolean)"
152
+ },
153
+ {
154
+ "name": "densityAdapter",
155
+ "type": "(JexlString | frozen)"
140
156
  }
141
157
  ],
142
158
  "shorthandKeys": [
@@ -263,6 +279,10 @@ export const configManifest = {
263
279
  {
264
280
  "name": "disableGeneHeuristic",
265
281
  "type": "(JexlString | boolean)"
282
+ },
283
+ {
284
+ "name": "densityAdapter",
285
+ "type": "(JexlString | frozen)"
266
286
  }
267
287
  ],
268
288
  "shorthandKeys": [
@@ -472,6 +492,10 @@ export const configManifest = {
472
492
  {
473
493
  "name": "aggregateField",
474
494
  "type": "(JexlString | string)"
495
+ },
496
+ {
497
+ "name": "densityAdapter",
498
+ "type": "(JexlString | frozen)"
475
499
  }
476
500
  ],
477
501
  "shorthandKeys": [
@@ -507,6 +531,10 @@ export const configManifest = {
507
531
  {
508
532
  "name": "dontRedispatch",
509
533
  "type": "(JexlString | string[])"
534
+ },
535
+ {
536
+ "name": "densityAdapter",
537
+ "type": "(JexlString | frozen)"
510
538
  }
511
539
  ],
512
540
  "shorthandKeys": [
@@ -848,6 +876,10 @@ export const configManifest = {
848
876
  {
849
877
  "name": "fetchSizeLimit",
850
878
  "type": "(JexlString | number)"
879
+ },
880
+ {
881
+ "name": "densityAdapter",
882
+ "type": "(JexlString | frozen)"
851
883
  }
852
884
  ],
853
885
  "shorthandKeys": [
@@ -881,6 +913,10 @@ export const configManifest = {
881
913
  {
882
914
  "name": "fetchSizeLimit",
883
915
  "type": "(JexlString | number)"
916
+ },
917
+ {
918
+ "name": "densityAdapter",
919
+ "type": "(JexlString | frozen)"
884
920
  }
885
921
  ],
886
922
  "shorthandKeys": []
@@ -1004,10 +1040,6 @@ export const configManifest = {
1004
1040
  "name": "type",
1005
1041
  "type": "\"BgzipMafAdapter\""
1006
1042
  },
1007
- {
1008
- "name": "samples",
1009
- "type": "(JexlString | frozen)"
1010
- },
1011
1043
  {
1012
1044
  "name": "mafGzLocation",
1013
1045
  "type": "(JexlString | (LocalPathLocation | UriLocation | BlobLocation | FileHandleLocation))"
@@ -1016,6 +1048,10 @@ export const configManifest = {
1016
1048
  "name": "taiLocation",
1017
1049
  "type": "(JexlString | (LocalPathLocation | UriLocation | BlobLocation | FileHandleLocation))"
1018
1050
  },
1051
+ {
1052
+ "name": "samples",
1053
+ "type": "(JexlString | frozen)"
1054
+ },
1019
1055
  {
1020
1056
  "name": "nhLocation",
1021
1057
  "type": "(JexlString | (LocalPathLocation | UriLocation | BlobLocation | FileHandleLocation))"
@@ -1031,7 +1067,8 @@ export const configManifest = {
1031
1067
  ],
1032
1068
  "shorthandKeys": [
1033
1069
  "uri",
1034
- "baseUri"
1070
+ "baseUri",
1071
+ "nhUri"
1035
1072
  ]
1036
1073
  },
1037
1074
  "BgzipTaffyAdapter": {
@@ -1040,10 +1077,6 @@ export const configManifest = {
1040
1077
  "name": "type",
1041
1078
  "type": "\"BgzipTaffyAdapter\""
1042
1079
  },
1043
- {
1044
- "name": "samples",
1045
- "type": "(JexlString | frozen)"
1046
- },
1047
1080
  {
1048
1081
  "name": "tafGzLocation",
1049
1082
  "type": "(JexlString | (LocalPathLocation | UriLocation | BlobLocation | FileHandleLocation))"
@@ -1052,6 +1085,10 @@ export const configManifest = {
1052
1085
  "name": "taiLocation",
1053
1086
  "type": "(JexlString | (LocalPathLocation | UriLocation | BlobLocation | FileHandleLocation))"
1054
1087
  },
1088
+ {
1089
+ "name": "samples",
1090
+ "type": "(JexlString | frozen)"
1091
+ },
1055
1092
  {
1056
1093
  "name": "nhLocation",
1057
1094
  "type": "(JexlString | (LocalPathLocation | UriLocation | BlobLocation | FileHandleLocation))"
@@ -1067,7 +1104,8 @@ export const configManifest = {
1067
1104
  ],
1068
1105
  "shorthandKeys": [
1069
1106
  "uri",
1070
- "baseUri"
1107
+ "baseUri",
1108
+ "nhUri"
1071
1109
  ]
1072
1110
  },
1073
1111
  "BigMafAdapter": {
@@ -1076,14 +1114,14 @@ export const configManifest = {
1076
1114
  "name": "type",
1077
1115
  "type": "\"BigMafAdapter\""
1078
1116
  },
1079
- {
1080
- "name": "samples",
1081
- "type": "(JexlString | frozen)"
1082
- },
1083
1117
  {
1084
1118
  "name": "bigBedLocation",
1085
1119
  "type": "(JexlString | (LocalPathLocation | UriLocation | BlobLocation | FileHandleLocation))"
1086
1120
  },
1121
+ {
1122
+ "name": "samples",
1123
+ "type": "(JexlString | frozen)"
1124
+ },
1087
1125
  {
1088
1126
  "name": "nhLocation",
1089
1127
  "type": "(JexlString | (LocalPathLocation | UriLocation | BlobLocation | FileHandleLocation))"
@@ -1105,10 +1143,6 @@ export const configManifest = {
1105
1143
  "name": "type",
1106
1144
  "type": "\"MafTabixAdapter\""
1107
1145
  },
1108
- {
1109
- "name": "samples",
1110
- "type": "(JexlString | frozen)"
1111
- },
1112
1146
  {
1113
1147
  "name": "bedGzLocation",
1114
1148
  "type": "(JexlString | (LocalPathLocation | UriLocation | BlobLocation | FileHandleLocation))"
@@ -1131,6 +1165,10 @@ export const configManifest = {
1131
1165
  }
1132
1166
  ]
1133
1167
  },
1168
+ {
1169
+ "name": "samples",
1170
+ "type": "(JexlString | frozen)"
1171
+ },
1134
1172
  {
1135
1173
  "name": "nhLocation",
1136
1174
  "type": "(JexlString | (LocalPathLocation | UriLocation | BlobLocation | FileHandleLocation))"
@@ -1167,11 +1205,11 @@ export const configManifest = {
1167
1205
  "baseUri"
1168
1206
  ]
1169
1207
  },
1170
- "AllVsAllPAFAdapter": {
1208
+ "MultiGenomePAFAdapter": {
1171
1209
  "slots": [
1172
1210
  {
1173
1211
  "name": "type",
1174
- "type": "\"AllVsAllPAFAdapter\""
1212
+ "type": "\"MultiGenomePAFAdapter\""
1175
1213
  },
1176
1214
  {
1177
1215
  "name": "assemblyNames",
@@ -1189,13 +1227,16 @@ export const configManifest = {
1189
1227
  "shorthandKeys": [
1190
1228
  "uri",
1191
1229
  "baseUri"
1230
+ ],
1231
+ "aliases": [
1232
+ "AllVsAllPAFAdapter"
1192
1233
  ]
1193
1234
  },
1194
- "AllVsAllIndexedPAFAdapter": {
1235
+ "MultiGenomeIndexedPAFAdapter": {
1195
1236
  "slots": [
1196
1237
  {
1197
1238
  "name": "type",
1198
- "type": "\"AllVsAllIndexedPAFAdapter\""
1239
+ "type": "\"MultiGenomeIndexedPAFAdapter\""
1199
1240
  },
1200
1241
  {
1201
1242
  "name": "assemblyNames",
@@ -1232,6 +1273,9 @@ export const configManifest = {
1232
1273
  "uri",
1233
1274
  "baseUri",
1234
1275
  "csi"
1276
+ ],
1277
+ "aliases": [
1278
+ "AllVsAllIndexedPAFAdapter"
1235
1279
  ]
1236
1280
  },
1237
1281
  "PAFAdapter": {
@@ -1309,6 +1353,23 @@ export const configManifest = {
1309
1353
  "csi"
1310
1354
  ]
1311
1355
  },
1356
+ "MultiPairwiseSyntenyAdapter": {
1357
+ "slots": [
1358
+ {
1359
+ "name": "type",
1360
+ "type": "\"MultiPairwiseSyntenyAdapter\""
1361
+ },
1362
+ {
1363
+ "name": "adapters",
1364
+ "type": "(JexlString | frozen)"
1365
+ },
1366
+ {
1367
+ "name": "coarseBpPerPxThreshold",
1368
+ "type": "(JexlString | number)"
1369
+ }
1370
+ ],
1371
+ "shorthandKeys": []
1372
+ },
1312
1373
  "DeltaAdapter": {
1313
1374
  "slots": [
1314
1375
  {
@@ -1562,6 +1623,10 @@ export const configManifest = {
1562
1623
  "name": "disableGeneHeuristic",
1563
1624
  "type": "(JexlString | boolean)"
1564
1625
  },
1626
+ {
1627
+ "name": "densityAdapter",
1628
+ "type": "(JexlString | frozen)"
1629
+ },
1565
1630
  {
1566
1631
  "name": "scoreTransform",
1567
1632
  "type": "(JexlString | string)"
@@ -1611,7 +1676,7 @@ export const configManifest = {
1611
1676
  },
1612
1677
  {
1613
1678
  "name": "adapter",
1614
- "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | AllVsAllPAFAdapterConfigurationSchema | AllVsAllIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
1679
+ "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | MultiGenomePAFAdapterConfigurationSchema | MultiGenomeIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | MultiPairwiseSyntenyAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
1615
1680
  },
1616
1681
  {
1617
1682
  "name": "textSearching",
@@ -1637,7 +1702,7 @@ export const configManifest = {
1637
1702
  },
1638
1703
  {
1639
1704
  "name": "displays",
1640
- "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
1705
+ "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
1641
1706
  },
1642
1707
  {
1643
1708
  "name": "formatDetails",
@@ -1714,7 +1779,7 @@ export const configManifest = {
1714
1779
  },
1715
1780
  {
1716
1781
  "name": "adapter",
1717
- "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | AllVsAllPAFAdapterConfigurationSchema | AllVsAllIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
1782
+ "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | MultiGenomePAFAdapterConfigurationSchema | MultiGenomeIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | MultiPairwiseSyntenyAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
1718
1783
  },
1719
1784
  {
1720
1785
  "name": "textSearching",
@@ -1740,7 +1805,7 @@ export const configManifest = {
1740
1805
  },
1741
1806
  {
1742
1807
  "name": "displays",
1743
- "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
1808
+ "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
1744
1809
  },
1745
1810
  {
1746
1811
  "name": "formatDetails",
@@ -1815,7 +1880,7 @@ export const configManifest = {
1815
1880
  },
1816
1881
  {
1817
1882
  "name": "adapter",
1818
- "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | AllVsAllPAFAdapterConfigurationSchema | AllVsAllIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
1883
+ "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | MultiGenomePAFAdapterConfigurationSchema | MultiGenomeIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | MultiPairwiseSyntenyAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
1819
1884
  },
1820
1885
  {
1821
1886
  "name": "textSearching",
@@ -1841,7 +1906,7 @@ export const configManifest = {
1841
1906
  },
1842
1907
  {
1843
1908
  "name": "displays",
1844
- "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
1909
+ "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
1845
1910
  },
1846
1911
  {
1847
1912
  "name": "formatDetails",
@@ -1899,11 +1964,11 @@ export const configManifest = {
1899
1964
  },
1900
1965
  {
1901
1966
  "name": "adapter",
1902
- "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | AllVsAllPAFAdapterConfigurationSchema | AllVsAllIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
1967
+ "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | MultiGenomePAFAdapterConfigurationSchema | MultiGenomeIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | MultiPairwiseSyntenyAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
1903
1968
  },
1904
1969
  {
1905
1970
  "name": "displays",
1906
- "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
1971
+ "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
1907
1972
  },
1908
1973
  {
1909
1974
  "name": "name",
@@ -1973,7 +2038,7 @@ export const configManifest = {
1973
2038
  },
1974
2039
  {
1975
2040
  "name": "adapter",
1976
- "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | AllVsAllPAFAdapterConfigurationSchema | AllVsAllIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
2041
+ "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | MultiGenomePAFAdapterConfigurationSchema | MultiGenomeIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | MultiPairwiseSyntenyAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
1977
2042
  },
1978
2043
  {
1979
2044
  "name": "textSearching",
@@ -1999,7 +2064,7 @@ export const configManifest = {
1999
2064
  },
2000
2065
  {
2001
2066
  "name": "displays",
2002
- "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
2067
+ "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
2003
2068
  },
2004
2069
  {
2005
2070
  "name": "formatDetails",
@@ -2043,7 +2108,6 @@ export const configManifest = {
2043
2108
  "LinearVariantDisplay",
2044
2109
  "LinearMultiSampleVariantDisplay",
2045
2110
  "LinearMultiSampleVariantMatrixDisplay",
2046
- "LDDisplay",
2047
2111
  "LinearPairedArcDisplay"
2048
2112
  ]
2049
2113
  },
@@ -2079,7 +2143,7 @@ export const configManifest = {
2079
2143
  },
2080
2144
  {
2081
2145
  "name": "adapter",
2082
- "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | AllVsAllPAFAdapterConfigurationSchema | AllVsAllIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
2146
+ "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | MultiGenomePAFAdapterConfigurationSchema | MultiGenomeIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | MultiPairwiseSyntenyAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
2083
2147
  },
2084
2148
  {
2085
2149
  "name": "textSearching",
@@ -2105,7 +2169,7 @@ export const configManifest = {
2105
2169
  },
2106
2170
  {
2107
2171
  "name": "displays",
2108
- "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
2172
+ "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
2109
2173
  },
2110
2174
  {
2111
2175
  "name": "formatDetails",
@@ -2180,7 +2244,7 @@ export const configManifest = {
2180
2244
  },
2181
2245
  {
2182
2246
  "name": "adapter",
2183
- "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | AllVsAllPAFAdapterConfigurationSchema | AllVsAllIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
2247
+ "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | MultiGenomePAFAdapterConfigurationSchema | MultiGenomeIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | MultiPairwiseSyntenyAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
2184
2248
  },
2185
2249
  {
2186
2250
  "name": "textSearching",
@@ -2206,7 +2270,7 @@ export const configManifest = {
2206
2270
  },
2207
2271
  {
2208
2272
  "name": "displays",
2209
- "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
2273
+ "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
2210
2274
  },
2211
2275
  {
2212
2276
  "name": "formatDetails",
@@ -2281,7 +2345,7 @@ export const configManifest = {
2281
2345
  },
2282
2346
  {
2283
2347
  "name": "adapter",
2284
- "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | AllVsAllPAFAdapterConfigurationSchema | AllVsAllIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
2348
+ "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | MultiGenomePAFAdapterConfigurationSchema | MultiGenomeIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | MultiPairwiseSyntenyAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
2285
2349
  },
2286
2350
  {
2287
2351
  "name": "textSearching",
@@ -2307,7 +2371,7 @@ export const configManifest = {
2307
2371
  },
2308
2372
  {
2309
2373
  "name": "displays",
2310
- "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
2374
+ "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
2311
2375
  },
2312
2376
  {
2313
2377
  "name": "formatDetails",
@@ -2382,7 +2446,7 @@ export const configManifest = {
2382
2446
  },
2383
2447
  {
2384
2448
  "name": "adapter",
2385
- "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | AllVsAllPAFAdapterConfigurationSchema | AllVsAllIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
2449
+ "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | MultiGenomePAFAdapterConfigurationSchema | MultiGenomeIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | MultiPairwiseSyntenyAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
2386
2450
  },
2387
2451
  {
2388
2452
  "name": "textSearching",
@@ -2408,7 +2472,7 @@ export const configManifest = {
2408
2472
  },
2409
2473
  {
2410
2474
  "name": "displays",
2411
- "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
2475
+ "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
2412
2476
  },
2413
2477
  {
2414
2478
  "name": "formatDetails",
@@ -2483,7 +2547,7 @@ export const configManifest = {
2483
2547
  },
2484
2548
  {
2485
2549
  "name": "adapter",
2486
- "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | AllVsAllPAFAdapterConfigurationSchema | AllVsAllIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
2550
+ "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | MultiGenomePAFAdapterConfigurationSchema | MultiGenomeIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | MultiPairwiseSyntenyAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
2487
2551
  },
2488
2552
  {
2489
2553
  "name": "textSearching",
@@ -2509,7 +2573,7 @@ export const configManifest = {
2509
2573
  },
2510
2574
  {
2511
2575
  "name": "displays",
2512
- "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
2576
+ "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
2513
2577
  },
2514
2578
  {
2515
2579
  "name": "formatDetails",
@@ -2584,7 +2648,7 @@ export const configManifest = {
2584
2648
  },
2585
2649
  {
2586
2650
  "name": "adapter",
2587
- "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | AllVsAllPAFAdapterConfigurationSchema | AllVsAllIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
2651
+ "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | MultiGenomePAFAdapterConfigurationSchema | MultiGenomeIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | MultiPairwiseSyntenyAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
2588
2652
  },
2589
2653
  {
2590
2654
  "name": "textSearching",
@@ -2610,7 +2674,7 @@ export const configManifest = {
2610
2674
  },
2611
2675
  {
2612
2676
  "name": "displays",
2613
- "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
2677
+ "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
2614
2678
  },
2615
2679
  {
2616
2680
  "name": "formatDetails",
@@ -2685,7 +2749,7 @@ export const configManifest = {
2685
2749
  },
2686
2750
  {
2687
2751
  "name": "adapter",
2688
- "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | AllVsAllPAFAdapterConfigurationSchema | AllVsAllIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
2752
+ "type": "(CytobandAdapterConfigurationSchema | CramAdapterConfigurationSchema | BamAdapterConfigurationSchema | SamAdapterConfigurationSchema | HtsgetBamAdapterConfigurationSchema | BigBedAdapterConfigurationSchema | BedAdapterConfigurationSchema | BedpeAdapterConfigurationSchema | StarFusionAdapterConfigurationSchema | BedTabixAdapterConfigurationSchema | BedGraphAdapterConfigurationSchema | BedGraphTabixAdapterConfigurationSchema | FromConfigAdapterConfigurationSchema | FromConfigRegionsAdapterConfigurationSchema | FromConfigSequenceAdapterConfigurationSchema | RefNameAliasAdapterConfigurationSchema | NcbiSequenceReportAliasAdapterConfigurationSchema | GtfAdapterConfigurationSchema | GtfTabixAdapterConfigurationSchema | Gff3TabixAdapterConfigurationSchema | Gff3AdapterConfigurationSchema | NCListAdapterConfigurationSchema | SPARQLAdapterConfigurationSchema | TwoBitAdapterConfigurationSchema | BgzipFastaAdapterConfigurationSchema | ChromSizesAdapterConfigurationSchema | IndexedFastaAdapterConfigurationSchema | UnindexedFastaAdapterConfigurationSchema | SequenceSearchAdapterConfigurationSchema | CrisprGuideAdapterConfigurationSchema | MotifListAdapterConfigurationSchema | VcfAdapterConfigurationSchema | VcfTabixAdapterConfigurationSchema | SplitVcfTabixAdapterConfigurationSchema | PlinkLDAdapterConfigurationSchema | PlinkLDTabixAdapterConfigurationSchema | MultiWiggleAdapterConfigurationSchema | BigWigAdapterConfigurationSchema | GCContentAdapterConfigurationSchema | BgzipMafAdapterConfigurationSchema | BgzipTaffyAdapterConfigurationSchema | BigMafAdapterConfigurationSchema | MafTabixAdapterConfigurationSchema | HicAdapterConfigurationSchema | MultiGenomePAFAdapterConfigurationSchema | MultiGenomeIndexedPAFAdapterConfigurationSchema | PAFAdapterConfigurationSchema | PairwiseIndexedPAFAdapterConfigurationSchema | MultiPairwiseSyntenyAdapterConfigurationSchema | DeltaAdapterConfigurationSchema | ChainAdapterConfigurationSchema | MCScanAnchorsAdapterConfigurationSchema | MCScanBlocksAdapterConfigurationSchema | MCScanSimpleAnchorsAdapterConfigurationSchema | MashMapAdapterConfigurationSchema | BlastTabularAdapterConfigurationSchema | GWASAdapterConfigurationSchema)"
2689
2753
  },
2690
2754
  {
2691
2755
  "name": "textSearching",
@@ -2711,7 +2775,7 @@ export const configManifest = {
2711
2775
  },
2712
2776
  {
2713
2777
  "name": "displays",
2714
- "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
2778
+ "type": "(LinearBasicDisplayConfigurationSchema | LinearMultiRowFeatureDisplayConfigurationSchema | LinearAlignmentsDisplayConfigurationSchema | ChordVariantDisplayConfigurationSchema | DotplotDisplayConfigurationSchema | LinearSyntenyDisplayConfigurationSchema | LGVSyntenyDisplayConfigurationSchema | MultiWaySyntenyDisplayConfigurationSchema | LinearReferenceSequenceDisplayConfigurationSchema | LinearVariantDisplayConfigurationSchema | LinearMultiSampleVariantDisplayConfigurationSchema | LinearMultiSampleVariantMatrixDisplayConfigurationSchema | LDTrackDisplayConfigurationSchema | LinearWiggleDisplayConfigurationSchema | MultiLinearWiggleDisplayConfigurationSchema | LinearGCContentDisplayConfigurationSchema | LinearGCContentTrackDisplayConfigurationSchema | LinearMafDisplayConfigurationSchema | LinearHicDisplayConfigurationSchema | LinearArcDisplayConfigurationSchema | LinearPairedArcDisplayConfigurationSchema | LinearManhattanDisplayConfigurationSchema)[]"
2715
2779
  },
2716
2780
  {
2717
2781
  "name": "formatDetails",
@@ -2766,10 +2830,6 @@ export const configManifest = {
2766
2830
  "name": "displayId",
2767
2831
  "type": "identifier"
2768
2832
  },
2769
- {
2770
- "name": "maxFeatureScreenDensity",
2771
- "type": "(JexlString | number)"
2772
- },
2773
2833
  {
2774
2834
  "name": "fetchSizeLimit",
2775
2835
  "type": "(JexlString | number)"
@@ -2790,10 +2850,6 @@ export const configManifest = {
2790
2850
  "name": "jexlFilters",
2791
2851
  "type": "(JexlString | string[])"
2792
2852
  },
2793
- {
2794
- "name": "maxHeight",
2795
- "type": "(JexlString | number)"
2796
- },
2797
2853
  {
2798
2854
  "name": "heightMode",
2799
2855
  "type": "(JexlString | (heightMode | undefined))"
@@ -2802,6 +2858,18 @@ export const configManifest = {
2802
2858
  "name": "growMaxHeight",
2803
2859
  "type": "(JexlString | number)"
2804
2860
  },
2861
+ {
2862
+ "name": "densityTier",
2863
+ "type": "(JexlString | Density tier)"
2864
+ },
2865
+ {
2866
+ "name": "densityTierBpPerPx",
2867
+ "type": "(JexlString | number)"
2868
+ },
2869
+ {
2870
+ "name": "maxFeatureScreenDensity",
2871
+ "type": "(JexlString | number)"
2872
+ },
2805
2873
  {
2806
2874
  "name": "showLegend",
2807
2875
  "type": "(JexlString | (boolean | undefined))"
@@ -2940,10 +3008,6 @@ export const configManifest = {
2940
3008
  "name": "displayId",
2941
3009
  "type": "identifier"
2942
3010
  },
2943
- {
2944
- "name": "maxFeatureScreenDensity",
2945
- "type": "(JexlString | number)"
2946
- },
2947
3011
  {
2948
3012
  "name": "fetchSizeLimit",
2949
3013
  "type": "(JexlString | number)"
@@ -2996,6 +3060,14 @@ export const configManifest = {
2996
3060
  "name": "showRowSeparators",
2997
3061
  "type": "(JexlString | boolean)"
2998
3062
  },
3063
+ {
3064
+ "name": "densityTier",
3065
+ "type": "(JexlString | Density tier)"
3066
+ },
3067
+ {
3068
+ "name": "densityTierBpPerPx",
3069
+ "type": "(JexlString | number)"
3070
+ },
2999
3071
  {
3000
3072
  "name": "colorRowLabels",
3001
3073
  "type": "(JexlString | boolean)"
@@ -3050,10 +3122,6 @@ export const configManifest = {
3050
3122
  "name": "displayId",
3051
3123
  "type": "identifier"
3052
3124
  },
3053
- {
3054
- "name": "maxFeatureScreenDensity",
3055
- "type": "(JexlString | number)"
3056
- },
3057
3125
  {
3058
3126
  "name": "fetchSizeLimit",
3059
3127
  "type": "(JexlString | number)"
@@ -3086,6 +3154,14 @@ export const configManifest = {
3086
3154
  "name": "growMaxHeight",
3087
3155
  "type": "(JexlString | number)"
3088
3156
  },
3157
+ {
3158
+ "name": "densityTier",
3159
+ "type": "(JexlString | Density tier)"
3160
+ },
3161
+ {
3162
+ "name": "densityTierBpPerPx",
3163
+ "type": "(JexlString | number)"
3164
+ },
3089
3165
  {
3090
3166
  "name": "readConnectionsLineWidth",
3091
3167
  "type": "(JexlString | number)"
@@ -3338,6 +3414,14 @@ export const configManifest = {
3338
3414
  {
3339
3415
  "name": "displayId",
3340
3416
  "type": "identifier"
3417
+ },
3418
+ {
3419
+ "name": "drawCurves",
3420
+ "type": "(JexlString | (boolean | undefined))"
3421
+ },
3422
+ {
3423
+ "name": "drawLocationMarkers",
3424
+ "type": "(JexlString | (boolean | undefined))"
3341
3425
  }
3342
3426
  ],
3343
3427
  "stateModelProps": [
@@ -3356,10 +3440,6 @@ export const configManifest = {
3356
3440
  "name": "displayId",
3357
3441
  "type": "identifier"
3358
3442
  },
3359
- {
3360
- "name": "maxFeatureScreenDensity",
3361
- "type": "(JexlString | number)"
3362
- },
3363
3443
  {
3364
3444
  "name": "fetchSizeLimit",
3365
3445
  "type": "(JexlString | number)"
@@ -3392,6 +3472,14 @@ export const configManifest = {
3392
3472
  "name": "growMaxHeight",
3393
3473
  "type": "(JexlString | number)"
3394
3474
  },
3475
+ {
3476
+ "name": "densityTier",
3477
+ "type": "(JexlString | Density tier)"
3478
+ },
3479
+ {
3480
+ "name": "densityTierBpPerPx",
3481
+ "type": "(JexlString | number)"
3482
+ },
3395
3483
  {
3396
3484
  "name": "readConnectionsLineWidth",
3397
3485
  "type": "(JexlString | number)"
@@ -3590,10 +3678,6 @@ export const configManifest = {
3590
3678
  "name": "displayId",
3591
3679
  "type": "identifier"
3592
3680
  },
3593
- {
3594
- "name": "maxFeatureScreenDensity",
3595
- "type": "(JexlString | number)"
3596
- },
3597
3681
  {
3598
3682
  "name": "fetchSizeLimit",
3599
3683
  "type": "(JexlString | number)"
@@ -3628,7 +3712,7 @@ export const configManifest = {
3628
3712
  },
3629
3713
  {
3630
3714
  "name": "ribbonColorBy",
3631
- "type": "(JexlString | ribbonColorBy)"
3715
+ "type": "(JexlString | string)"
3632
3716
  },
3633
3717
  {
3634
3718
  "name": "drawCurves",
@@ -3638,17 +3722,27 @@ export const configManifest = {
3638
3722
  "name": "bridgeSkippedLanes",
3639
3723
  "type": "(JexlString | boolean)"
3640
3724
  },
3725
+ {
3726
+ "name": "showLegend",
3727
+ "type": "(JexlString | (boolean | undefined))"
3728
+ },
3641
3729
  {
3642
3730
  "name": "showLaneTicks",
3643
3731
  "type": "(JexlString | boolean)"
3732
+ },
3733
+ {
3734
+ "name": "lanes",
3735
+ "type": "(JexlString | string[])"
3644
3736
  }
3645
3737
  ],
3646
3738
  "stateModelProps": [
3647
3739
  "id",
3648
3740
  "type",
3649
3741
  "configuration",
3742
+ "lodMode",
3650
3743
  "rowOrder",
3651
- "hiddenLanes"
3744
+ "hiddenLanes",
3745
+ "selectedLanes"
3652
3746
  ]
3653
3747
  },
3654
3748
  "LinearReferenceSequenceDisplay": {
@@ -3702,10 +3796,6 @@ export const configManifest = {
3702
3796
  "name": "displayId",
3703
3797
  "type": "identifier"
3704
3798
  },
3705
- {
3706
- "name": "maxFeatureScreenDensity",
3707
- "type": "(JexlString | number)"
3708
- },
3709
3799
  {
3710
3800
  "name": "fetchSizeLimit",
3711
3801
  "type": "(JexlString | number)"
@@ -3726,10 +3816,6 @@ export const configManifest = {
3726
3816
  "name": "jexlFilters",
3727
3817
  "type": "(JexlString | string[])"
3728
3818
  },
3729
- {
3730
- "name": "maxHeight",
3731
- "type": "(JexlString | number)"
3732
- },
3733
3819
  {
3734
3820
  "name": "heightMode",
3735
3821
  "type": "(JexlString | (heightMode | undefined))"
@@ -3738,6 +3824,18 @@ export const configManifest = {
3738
3824
  "name": "growMaxHeight",
3739
3825
  "type": "(JexlString | number)"
3740
3826
  },
3827
+ {
3828
+ "name": "densityTier",
3829
+ "type": "(JexlString | Density tier)"
3830
+ },
3831
+ {
3832
+ "name": "densityTierBpPerPx",
3833
+ "type": "(JexlString | number)"
3834
+ },
3835
+ {
3836
+ "name": "maxFeatureScreenDensity",
3837
+ "type": "(JexlString | number)"
3838
+ },
3741
3839
  {
3742
3840
  "name": "showLegend",
3743
3841
  "type": "(JexlString | (boolean | undefined))"
@@ -3865,10 +3963,6 @@ export const configManifest = {
3865
3963
  "name": "displayId",
3866
3964
  "type": "identifier"
3867
3965
  },
3868
- {
3869
- "name": "maxFeatureScreenDensity",
3870
- "type": "(JexlString | number)"
3871
- },
3872
3966
  {
3873
3967
  "name": "fetchSizeLimit",
3874
3968
  "type": "(JexlString | number)"
@@ -3889,10 +3983,6 @@ export const configManifest = {
3889
3983
  "name": "jexlFilters",
3890
3984
  "type": "(JexlString | string[])"
3891
3985
  },
3892
- {
3893
- "name": "showReferenceAlleles",
3894
- "type": "(JexlString | boolean)"
3895
- },
3896
3986
  {
3897
3987
  "name": "lineZoneHeight",
3898
3988
  "type": "(JexlString | number)"
@@ -3998,10 +4088,6 @@ export const configManifest = {
3998
4088
  "name": "displayId",
3999
4089
  "type": "identifier"
4000
4090
  },
4001
- {
4002
- "name": "maxFeatureScreenDensity",
4003
- "type": "(JexlString | number)"
4004
- },
4005
4091
  {
4006
4092
  "name": "fetchSizeLimit",
4007
4093
  "type": "(JexlString | number)"
@@ -4022,10 +4108,6 @@ export const configManifest = {
4022
4108
  "name": "jexlFilters",
4023
4109
  "type": "(JexlString | string[])"
4024
4110
  },
4025
- {
4026
- "name": "showReferenceAlleles",
4027
- "type": "(JexlString | boolean)"
4028
- },
4029
4111
  {
4030
4112
  "name": "lineZoneHeight",
4031
4113
  "type": "(JexlString | number)"
@@ -4105,112 +4187,6 @@ export const configManifest = {
4105
4187
  "jexlFiltersSetting"
4106
4188
  ]
4107
4189
  },
4108
- "LDDisplay": {
4109
- "slots": [
4110
- {
4111
- "name": "type",
4112
- "type": "\"LDDisplay\""
4113
- },
4114
- {
4115
- "name": "displayId",
4116
- "type": "identifier"
4117
- },
4118
- {
4119
- "name": "maxFeatureScreenDensity",
4120
- "type": "(JexlString | number)"
4121
- },
4122
- {
4123
- "name": "fetchSizeLimit",
4124
- "type": "(JexlString | number)"
4125
- },
4126
- {
4127
- "name": "forceLoad",
4128
- "type": "(JexlString | boolean)"
4129
- },
4130
- {
4131
- "name": "height",
4132
- "type": "(JexlString | number)"
4133
- },
4134
- {
4135
- "name": "mouseover",
4136
- "type": "(JexlString | string)"
4137
- },
4138
- {
4139
- "name": "jexlFilters",
4140
- "type": "(JexlString | string[])"
4141
- },
4142
- {
4143
- "name": "minorAlleleFrequencyFilter",
4144
- "type": "(JexlString | number)"
4145
- },
4146
- {
4147
- "name": "lengthCutoffFilter",
4148
- "type": "(JexlString | number)"
4149
- },
4150
- {
4151
- "name": "lineZoneHeight",
4152
- "type": "(JexlString | number)"
4153
- },
4154
- {
4155
- "name": "ldMetric",
4156
- "type": "(JexlString | LDMetric)"
4157
- },
4158
- {
4159
- "name": "showLegend",
4160
- "type": "(JexlString | (boolean | undefined))"
4161
- },
4162
- {
4163
- "name": "showLDTriangle",
4164
- "type": "(JexlString | boolean)"
4165
- },
4166
- {
4167
- "name": "squashToHeight",
4168
- "type": "(JexlString | boolean)"
4169
- },
4170
- {
4171
- "name": "hweFilterThreshold",
4172
- "type": "(JexlString | number)"
4173
- },
4174
- {
4175
- "name": "callRateFilter",
4176
- "type": "(JexlString | number)"
4177
- },
4178
- {
4179
- "name": "maxVariantSeparation",
4180
- "type": "(JexlString | number)"
4181
- },
4182
- {
4183
- "name": "showVerticalGuides",
4184
- "type": "(JexlString | boolean)"
4185
- },
4186
- {
4187
- "name": "showLabels",
4188
- "type": "(JexlString | boolean)"
4189
- },
4190
- {
4191
- "name": "tickHeight",
4192
- "type": "(JexlString | number)"
4193
- },
4194
- {
4195
- "name": "useGenomicPositions",
4196
- "type": "(JexlString | boolean)"
4197
- },
4198
- {
4199
- "name": "signedLD",
4200
- "type": "(JexlString | boolean)"
4201
- },
4202
- {
4203
- "name": "ldMethod",
4204
- "type": "(JexlString | LDMethod)"
4205
- }
4206
- ],
4207
- "stateModelProps": [
4208
- "id",
4209
- "type",
4210
- "configuration",
4211
- "jexlFiltersSetting"
4212
- ]
4213
- },
4214
4190
  "LDTrackDisplay": {
4215
4191
  "slots": [
4216
4192
  {
@@ -4221,10 +4197,6 @@ export const configManifest = {
4221
4197
  "name": "displayId",
4222
4198
  "type": "identifier"
4223
4199
  },
4224
- {
4225
- "name": "maxFeatureScreenDensity",
4226
- "type": "(JexlString | number)"
4227
- },
4228
4200
  {
4229
4201
  "name": "fetchSizeLimit",
4230
4202
  "type": "(JexlString | number)"
@@ -4245,14 +4217,6 @@ export const configManifest = {
4245
4217
  "name": "jexlFilters",
4246
4218
  "type": "(JexlString | string[])"
4247
4219
  },
4248
- {
4249
- "name": "minorAlleleFrequencyFilter",
4250
- "type": "(JexlString | number)"
4251
- },
4252
- {
4253
- "name": "lengthCutoffFilter",
4254
- "type": "(JexlString | number)"
4255
- },
4256
4220
  {
4257
4221
  "name": "lineZoneHeight",
4258
4222
  "type": "(JexlString | number)"
@@ -4273,14 +4237,6 @@ export const configManifest = {
4273
4237
  "name": "squashToHeight",
4274
4238
  "type": "(JexlString | boolean)"
4275
4239
  },
4276
- {
4277
- "name": "hweFilterThreshold",
4278
- "type": "(JexlString | number)"
4279
- },
4280
- {
4281
- "name": "callRateFilter",
4282
- "type": "(JexlString | number)"
4283
- },
4284
4240
  {
4285
4241
  "name": "maxVariantSeparation",
4286
4242
  "type": "(JexlString | number)"
@@ -4300,21 +4256,12 @@ export const configManifest = {
4300
4256
  {
4301
4257
  "name": "useGenomicPositions",
4302
4258
  "type": "(JexlString | boolean)"
4303
- },
4304
- {
4305
- "name": "signedLD",
4306
- "type": "(JexlString | boolean)"
4307
- },
4308
- {
4309
- "name": "ldMethod",
4310
- "type": "(JexlString | LDMethod)"
4311
4259
  }
4312
4260
  ],
4313
4261
  "stateModelProps": [
4314
4262
  "id",
4315
4263
  "type",
4316
- "configuration",
4317
- "jexlFiltersSetting"
4264
+ "configuration"
4318
4265
  ]
4319
4266
  },
4320
4267
  "LinearWiggleDisplay": {
@@ -4414,14 +4361,6 @@ export const configManifest = {
4414
4361
  {
4415
4362
  "name": "summaryScoreMode",
4416
4363
  "type": "(JexlString | Score type)"
4417
- },
4418
- {
4419
- "name": "fetchSizeLimit",
4420
- "type": "(JexlString | number)"
4421
- },
4422
- {
4423
- "name": "forceLoad",
4424
- "type": "(JexlString | boolean)"
4425
4364
  }
4426
4365
  ],
4427
4366
  "stateModelProps": [
@@ -4536,14 +4475,6 @@ export const configManifest = {
4536
4475
  {
4537
4476
  "name": "showLegend",
4538
4477
  "type": "(JexlString | (boolean | undefined))"
4539
- },
4540
- {
4541
- "name": "fetchSizeLimit",
4542
- "type": "(JexlString | number)"
4543
- },
4544
- {
4545
- "name": "forceLoad",
4546
- "type": "(JexlString | boolean)"
4547
4478
  }
4548
4479
  ],
4549
4480
  "stateModelProps": [
@@ -4659,14 +4590,6 @@ export const configManifest = {
4659
4590
  "name": "summaryScoreMode",
4660
4591
  "type": "(JexlString | Score type)"
4661
4592
  },
4662
- {
4663
- "name": "fetchSizeLimit",
4664
- "type": "(JexlString | number)"
4665
- },
4666
- {
4667
- "name": "forceLoad",
4668
- "type": "(JexlString | boolean)"
4669
- },
4670
4593
  {
4671
4594
  "name": "windowSize",
4672
4595
  "type": "(JexlString | number)"
@@ -4785,14 +4708,6 @@ export const configManifest = {
4785
4708
  "name": "summaryScoreMode",
4786
4709
  "type": "(JexlString | Score type)"
4787
4710
  },
4788
- {
4789
- "name": "fetchSizeLimit",
4790
- "type": "(JexlString | number)"
4791
- },
4792
- {
4793
- "name": "forceLoad",
4794
- "type": "(JexlString | boolean)"
4795
- },
4796
4711
  {
4797
4712
  "name": "windowSize",
4798
4713
  "type": "(JexlString | number)"
@@ -4823,10 +4738,6 @@ export const configManifest = {
4823
4738
  "name": "displayId",
4824
4739
  "type": "identifier"
4825
4740
  },
4826
- {
4827
- "name": "maxFeatureScreenDensity",
4828
- "type": "(JexlString | number)"
4829
- },
4830
4741
  {
4831
4742
  "name": "fetchSizeLimit",
4832
4743
  "type": "(JexlString | number)"
@@ -4879,6 +4790,10 @@ export const configManifest = {
4879
4790
  "name": "showRowLabels",
4880
4791
  "type": "(JexlString | boolean)"
4881
4792
  },
4793
+ {
4794
+ "name": "showLegend",
4795
+ "type": "(JexlString | (boolean | undefined))"
4796
+ },
4882
4797
  {
4883
4798
  "name": "showCoverage",
4884
4799
  "type": "(JexlString | boolean)"
@@ -4923,6 +4838,10 @@ export const configManifest = {
4923
4838
  "name": "colorByChromosome",
4924
4839
  "type": "(JexlString | boolean)"
4925
4840
  },
4841
+ {
4842
+ "name": "showReferenceRow",
4843
+ "type": "(JexlString | boolean)"
4844
+ },
4926
4845
  {
4927
4846
  "name": "showInversions",
4928
4847
  "type": "(JexlString | boolean)"
@@ -4952,30 +4871,10 @@ export const configManifest = {
4952
4871
  "name": "displayId",
4953
4872
  "type": "identifier"
4954
4873
  },
4955
- {
4956
- "name": "maxFeatureScreenDensity",
4957
- "type": "(JexlString | number)"
4958
- },
4959
- {
4960
- "name": "fetchSizeLimit",
4961
- "type": "(JexlString | number)"
4962
- },
4963
- {
4964
- "name": "forceLoad",
4965
- "type": "(JexlString | boolean)"
4966
- },
4967
4874
  {
4968
4875
  "name": "height",
4969
4876
  "type": "(JexlString | number)"
4970
4877
  },
4971
- {
4972
- "name": "mouseover",
4973
- "type": "(JexlString | string)"
4974
- },
4975
- {
4976
- "name": "jexlFilters",
4977
- "type": "(JexlString | string[])"
4978
- },
4979
4878
  {
4980
4879
  "name": "colorScheme",
4981
4880
  "type": "(JexlString | HicColorScheme)"
@@ -5025,30 +4924,10 @@ export const configManifest = {
5025
4924
  "name": "displayId",
5026
4925
  "type": "identifier"
5027
4926
  },
5028
- {
5029
- "name": "maxFeatureScreenDensity",
5030
- "type": "(JexlString | number)"
5031
- },
5032
- {
5033
- "name": "fetchSizeLimit",
5034
- "type": "(JexlString | number)"
5035
- },
5036
- {
5037
- "name": "forceLoad",
5038
- "type": "(JexlString | boolean)"
5039
- },
5040
4927
  {
5041
4928
  "name": "height",
5042
4929
  "type": "(JexlString | number)"
5043
4930
  },
5044
- {
5045
- "name": "mouseover",
5046
- "type": "(JexlString | string)"
5047
- },
5048
- {
5049
- "name": "jexlFilters",
5050
- "type": "(JexlString | string[])"
5051
- },
5052
4931
  {
5053
4932
  "name": "color",
5054
4933
  "type": "(JexlString | string)"
@@ -5076,6 +4955,14 @@ export const configManifest = {
5076
4955
  {
5077
4956
  "name": "minScore",
5078
4957
  "type": "(JexlString | number)"
4958
+ },
4959
+ {
4960
+ "name": "fetchSizeLimit",
4961
+ "type": "(JexlString | number)"
4962
+ },
4963
+ {
4964
+ "name": "forceLoad",
4965
+ "type": "(JexlString | boolean)"
5079
4966
  }
5080
4967
  ],
5081
4968
  "legacyKeys": [
@@ -5097,30 +4984,10 @@ export const configManifest = {
5097
4984
  "name": "displayId",
5098
4985
  "type": "identifier"
5099
4986
  },
5100
- {
5101
- "name": "maxFeatureScreenDensity",
5102
- "type": "(JexlString | number)"
5103
- },
5104
- {
5105
- "name": "fetchSizeLimit",
5106
- "type": "(JexlString | number)"
5107
- },
5108
- {
5109
- "name": "forceLoad",
5110
- "type": "(JexlString | boolean)"
5111
- },
5112
4987
  {
5113
4988
  "name": "height",
5114
4989
  "type": "(JexlString | number)"
5115
4990
  },
5116
- {
5117
- "name": "mouseover",
5118
- "type": "(JexlString | string)"
5119
- },
5120
- {
5121
- "name": "jexlFilters",
5122
- "type": "(JexlString | string[])"
5123
- },
5124
4991
  {
5125
4992
  "name": "color",
5126
4993
  "type": "(JexlString | string)"
@@ -5132,6 +4999,14 @@ export const configManifest = {
5132
4999
  {
5133
5000
  "name": "minScore",
5134
5001
  "type": "(JexlString | number)"
5002
+ },
5003
+ {
5004
+ "name": "fetchSizeLimit",
5005
+ "type": "(JexlString | number)"
5006
+ },
5007
+ {
5008
+ "name": "forceLoad",
5009
+ "type": "(JexlString | boolean)"
5135
5010
  }
5136
5011
  ],
5137
5012
  "stateModelProps": [
@@ -5150,30 +5025,10 @@ export const configManifest = {
5150
5025
  "name": "displayId",
5151
5026
  "type": "identifier"
5152
5027
  },
5153
- {
5154
- "name": "maxFeatureScreenDensity",
5155
- "type": "(JexlString | number)"
5156
- },
5157
- {
5158
- "name": "fetchSizeLimit",
5159
- "type": "(JexlString | number)"
5160
- },
5161
- {
5162
- "name": "forceLoad",
5163
- "type": "(JexlString | boolean)"
5164
- },
5165
5028
  {
5166
5029
  "name": "height",
5167
5030
  "type": "(JexlString | number)"
5168
5031
  },
5169
- {
5170
- "name": "mouseover",
5171
- "type": "(JexlString | string)"
5172
- },
5173
- {
5174
- "name": "jexlFilters",
5175
- "type": "(JexlString | string[])"
5176
- },
5177
5032
  {
5178
5033
  "name": "color",
5179
5034
  "type": "(JexlString | string)"
@@ -5276,14 +5131,6 @@ export const configManifest = {
5276
5131
  "name": "ixxFilePath",
5277
5132
  "type": "(JexlString | (LocalPathLocation | UriLocation | BlobLocation | FileHandleLocation))"
5278
5133
  },
5279
- {
5280
- "name": "metaFilePath",
5281
- "type": "(JexlString | (LocalPathLocation | UriLocation | BlobLocation | FileHandleLocation))"
5282
- },
5283
- {
5284
- "name": "tracks",
5285
- "type": "(JexlString | string[])"
5286
- },
5287
5134
  {
5288
5135
  "name": "assemblyNames",
5289
5136
  "type": "(JexlString | string[])"
@@ -5369,6 +5216,210 @@ export const configManifest = {
5369
5216
  ]
5370
5217
  }
5371
5218
  },
5219
+ "views": {
5220
+ "LinearGenomeView": {
5221
+ "stateModelProps": [
5222
+ "id",
5223
+ "displayName",
5224
+ "minimized",
5225
+ "highlight",
5226
+ "showHighlightChips",
5227
+ "type",
5228
+ "windowStartBp",
5229
+ "windowWidthBp",
5230
+ "legacyBpPerPx",
5231
+ "displayedRegions",
5232
+ "tracks",
5233
+ "hideHeader",
5234
+ "hideHeaderOverview",
5235
+ "hideNoTracksActive",
5236
+ "trackSelectorType",
5237
+ "showCenterLine",
5238
+ "showCytobands",
5239
+ "trackLabels",
5240
+ "showGridlines",
5241
+ "labelsVisible",
5242
+ "colorByCDS",
5243
+ "showAminoAcids",
5244
+ "showTrackOutlines",
5245
+ "scalebarOnly",
5246
+ "launch"
5247
+ ],
5248
+ "launchKeys": [
5249
+ "assembly",
5250
+ "displayedRegionNames",
5251
+ "grow",
5252
+ "highlight",
5253
+ "loc",
5254
+ "nav",
5255
+ "tracklist",
5256
+ "tracks"
5257
+ ],
5258
+ "passThrough": [
5259
+ "bpPerPx",
5260
+ "offsetPx"
5261
+ ]
5262
+ },
5263
+ "CircularView": {
5264
+ "stateModelProps": [
5265
+ "id",
5266
+ "displayName",
5267
+ "minimized",
5268
+ "type",
5269
+ "offsetRadians",
5270
+ "bpPerPx",
5271
+ "autoFit",
5272
+ "tracks",
5273
+ "hideVerticalResizeHandle",
5274
+ "hideTrackSelectorButton",
5275
+ "disableImportForm",
5276
+ "height",
5277
+ "displayedRegions",
5278
+ "minimumRadiusPx",
5279
+ "spacingPx",
5280
+ "paddingPx",
5281
+ "minVisibleWidth",
5282
+ "trackSelectorType",
5283
+ "launch"
5284
+ ],
5285
+ "launchKeys": [
5286
+ "assembly",
5287
+ "displayedRegionNames",
5288
+ "tracks"
5289
+ ]
5290
+ },
5291
+ "DotplotView": {
5292
+ "stateModelProps": [
5293
+ "id",
5294
+ "displayName",
5295
+ "minimized",
5296
+ "highlight",
5297
+ "showHighlightChips",
5298
+ "colorBy",
5299
+ "trackColors",
5300
+ "hideUnlabelled",
5301
+ "type",
5302
+ "height",
5303
+ "trackSelectorType",
5304
+ "assemblyNames",
5305
+ "drawCigar",
5306
+ "showGridlines",
5307
+ "lodMode",
5308
+ "lockAspectRatio",
5309
+ "lineWidth",
5310
+ "alpha",
5311
+ "minAlignmentLength",
5312
+ "minIdentity",
5313
+ "hview",
5314
+ "vview",
5315
+ "tracks",
5316
+ "launch"
5317
+ ],
5318
+ "launchKeys": [
5319
+ "autoDiagonalize",
5320
+ "highlight",
5321
+ "tracks",
5322
+ "views"
5323
+ ]
5324
+ },
5325
+ "LinearSyntenyView": {
5326
+ "stateModelProps": [
5327
+ "id",
5328
+ "displayName",
5329
+ "minimized",
5330
+ "type",
5331
+ "trackSelectorType",
5332
+ "linkViews",
5333
+ "followSynteny",
5334
+ "sameScale",
5335
+ "followAnchorIndex",
5336
+ "followMatchOrientation",
5337
+ "levels",
5338
+ "views",
5339
+ "colorBy",
5340
+ "trackColors",
5341
+ "hideUnlabelled",
5342
+ "cigarMode",
5343
+ "showOffscreenMates",
5344
+ "overdrawPx",
5345
+ "alpha",
5346
+ "minAlignmentLength",
5347
+ "lodMode",
5348
+ "opacityByIdentity",
5349
+ "fadeThinAlignmentsMode",
5350
+ "launch"
5351
+ ],
5352
+ "launchKeys": [
5353
+ "autoDiagonalize",
5354
+ "collapseEmptyRows",
5355
+ "drawCurves",
5356
+ "drawLocationMarkers",
5357
+ "levelHeights",
5358
+ "sameScale",
5359
+ "tracks",
5360
+ "views"
5361
+ ]
5362
+ },
5363
+ "SpreadsheetView": {
5364
+ "stateModelProps": [
5365
+ "id",
5366
+ "displayName",
5367
+ "minimized",
5368
+ "type",
5369
+ "height",
5370
+ "hideVerticalResizeHandle",
5371
+ "importWizard",
5372
+ "spreadsheet",
5373
+ "launch"
5374
+ ],
5375
+ "launchKeys": [
5376
+ "assembly",
5377
+ "baseUri",
5378
+ "fileType",
5379
+ "filterText",
5380
+ "uri"
5381
+ ]
5382
+ },
5383
+ "SvInspectorView": {
5384
+ "stateModelProps": [
5385
+ "id",
5386
+ "displayName",
5387
+ "minimized",
5388
+ "type",
5389
+ "height",
5390
+ "onlyDisplayRelevantRegionsInCircularView",
5391
+ "spreadsheetWidthFraction",
5392
+ "spreadsheetView",
5393
+ "circularView",
5394
+ "launch"
5395
+ ],
5396
+ "launchKeys": [
5397
+ "assembly",
5398
+ "baseUri",
5399
+ "fileType",
5400
+ "filterText",
5401
+ "uri"
5402
+ ]
5403
+ },
5404
+ "BreakpointSplitView": {
5405
+ "stateModelProps": [
5406
+ "id",
5407
+ "displayName",
5408
+ "minimized",
5409
+ "type",
5410
+ "height",
5411
+ "showIntraviewLinks",
5412
+ "linkViews",
5413
+ "interactiveOverlay",
5414
+ "showHeader",
5415
+ "views",
5416
+ "launch"
5417
+ ],
5418
+ "launchKeys": [
5419
+ "views"
5420
+ ]
5421
+ }
5422
+ },
5372
5423
  "migratedDisplayKeys": {
5373
5424
  "*": [
5374
5425
  "heightPreConfig"