@jbrowse/cli 3.5.1 → 3.6.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (72) hide show
  1. package/README.md +291 -607
  2. package/bin/run +1 -6
  3. package/bundle/index.js +4459 -0
  4. package/dist/base.js +5 -0
  5. package/dist/bin.js +3 -0
  6. package/dist/commands/add-assembly.js +143 -0
  7. package/dist/commands/add-connection.js +177 -0
  8. package/dist/commands/add-track-json.js +81 -0
  9. package/dist/commands/add-track-utils/adapter-utils.js +304 -0
  10. package/dist/commands/add-track-utils/file-operations.js +36 -0
  11. package/dist/commands/add-track-utils/track-config.js +63 -0
  12. package/dist/commands/add-track-utils/validators.js +74 -0
  13. package/dist/commands/add-track.js +193 -0
  14. package/dist/commands/admin-server-utils.js +238 -0
  15. package/dist/commands/admin-server.js +51 -0
  16. package/dist/commands/assembly-utils.js +410 -0
  17. package/dist/commands/create.js +121 -0
  18. package/dist/commands/make-pif-utils/cigar-utils.js +29 -0
  19. package/dist/commands/make-pif-utils/file-utils.js +38 -0
  20. package/dist/commands/make-pif-utils/pif-generator.js +64 -0
  21. package/dist/commands/make-pif-utils/validators.js +22 -0
  22. package/dist/commands/make-pif.js +58 -0
  23. package/dist/commands/remove-track.js +58 -0
  24. package/dist/commands/set-default-session.js +104 -0
  25. package/dist/commands/sort-bed-utils/constants.js +12 -0
  26. package/dist/commands/sort-bed-utils/process-utils.js +23 -0
  27. package/dist/commands/sort-bed-utils/sort-utils.js +24 -0
  28. package/dist/commands/sort-bed-utils/validators.js +22 -0
  29. package/dist/commands/sort-bed.js +49 -0
  30. package/dist/commands/sort-gff-utils/constants.js +13 -0
  31. package/dist/commands/sort-gff-utils/process-utils.js +23 -0
  32. package/dist/commands/sort-gff-utils/sort-utils.js +55 -0
  33. package/dist/commands/sort-gff-utils/validators.js +21 -0
  34. package/dist/commands/sort-gff.js +49 -0
  35. package/dist/commands/text-index-utils/adapter-utils.js +63 -0
  36. package/dist/commands/text-index-utils/aggregate.js +87 -0
  37. package/dist/commands/text-index-utils/config-utils.js +59 -0
  38. package/dist/commands/text-index-utils/file-list.js +31 -0
  39. package/dist/commands/text-index-utils/index.js +9 -0
  40. package/dist/commands/text-index-utils/indexing-utils.js +84 -0
  41. package/dist/commands/text-index-utils/per-track.js +65 -0
  42. package/dist/commands/text-index-utils/validators.js +20 -0
  43. package/dist/commands/text-index.js +113 -0
  44. package/dist/commands/track-utils.js +85 -0
  45. package/dist/commands/upgrade.js +122 -0
  46. package/dist/index.js +119 -0
  47. package/dist/utils.js +154 -0
  48. package/package.json +13 -38
  49. package/bin/dev +0 -17
  50. package/bin/dev.cmd +0 -3
  51. package/bin/run.cmd +0 -3
  52. package/lib/base.js +0 -157
  53. package/lib/commands/add-assembly.js +0 -491
  54. package/lib/commands/add-connection.js +0 -170
  55. package/lib/commands/add-track-json.js +0 -67
  56. package/lib/commands/add-track.js +0 -564
  57. package/lib/commands/admin-server.js +0 -153
  58. package/lib/commands/create.js +0 -111
  59. package/lib/commands/make-pif.js +0 -116
  60. package/lib/commands/remove-track.js +0 -37
  61. package/lib/commands/set-default-session.js +0 -98
  62. package/lib/commands/sort-bed.js +0 -45
  63. package/lib/commands/sort-gff.js +0 -45
  64. package/lib/commands/text-index.js +0 -380
  65. package/lib/commands/upgrade.js +0 -109
  66. package/lib/index.js +0 -6
  67. package/oclif.manifest.json +0 -1169
  68. /package/{lib → dist}/fetchWithProxy.js +0 -0
  69. /package/{lib → dist}/types/common.js +0 -0
  70. /package/{lib → dist}/types/gff3Adapter.js +0 -0
  71. /package/{lib → dist}/types/vcfAdapter.js +0 -0
  72. /package/{lib → dist}/util.js +0 -0

There are too many changes on this page to be displayed.

The amount of changes on this page would crash your brower.

You can still verify the content by downloading the package file manually.