@jbrowse/cli 2.6.2 → 2.7.0

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Files changed (22) hide show
  1. package/README.md +274 -206
  2. package/bin/dev +17 -0
  3. package/bin/dev.cmd +3 -0
  4. package/bin/run +6 -3
  5. package/lib/base.js +32 -80
  6. package/lib/commands/add-assembly.js +29 -27
  7. package/lib/commands/add-connection.js +43 -37
  8. package/lib/commands/add-track-json.js +9 -10
  9. package/lib/commands/add-track.js +74 -73
  10. package/lib/commands/admin-server.js +7 -7
  11. package/lib/commands/create.js +14 -16
  12. package/lib/commands/remove-track.js +9 -11
  13. package/lib/commands/set-default-session.js +14 -17
  14. package/lib/commands/text-index.js +86 -101
  15. package/lib/commands/upgrade.js +13 -14
  16. package/lib/fetchWithProxy.js +1 -1
  17. package/lib/index.js +2 -2
  18. package/lib/types/common.js +2 -2
  19. package/lib/types/gff3Adapter.js +54 -88
  20. package/lib/types/vcfAdapter.js +58 -93
  21. package/oclif.manifest.json +918 -1
  22. package/package.json +10 -12
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@jbrowse/cli",
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- "version": "2.6.2",
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+ "version": "2.7.0",
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  "description": "A command line tool for working with JBrowse 2",
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  "keywords": [
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  "jbrowse",
@@ -28,26 +28,24 @@
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  "/oclif.manifest.json"
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  ],
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  "engines": {
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- "node": ">=10.4.0"
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+ "node": ">=16"
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  },
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  "scripts": {
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- "build": "oclif-dev pack",
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- "build:typescript": "tsc --build",
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+ "build": "tsc --build",
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  "postpack": "rimraf oclif.manifest.json",
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  "clean": "rimraf lib",
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- "prepack": "npm run clean && npm run build:typescript && npm run manifest && npm run docs",
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- "manifest": "oclif-dev manifest",
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+ "prepack": "npm run clean && npm run build && npm run manifest && npm run docs",
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+ "manifest": "oclif manifest",
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  "version": "npm run docs && npm run docs:version:add",
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+ "predocs": "npm run build",
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  "docs": "npm run docs:create && npm run docs:format",
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- "docs:create": "oclif-dev readme",
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+ "docs:create": "oclif readme",
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  "docs:format": "prettier --write README.md",
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  "docs:version:add": "git add README.md"
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  },
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  "dependencies": {
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- "@oclif/command": "^1.8.11",
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- "@oclif/config": "^1.18.2",
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- "@oclif/errors": "^1",
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- "@oclif/plugin-help": "3.2.14",
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+ "@oclif/core": "^2.12.0",
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+ "@oclif/plugin-help": "^5.2.18",
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  "boxen": "^4.2.0",
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  "chalk": "^4.1.0",
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  "cli-progress": "^3.9.0",
@@ -75,5 +73,5 @@
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  "publishConfig": {
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  "access": "public"
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  },
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- "gitHead": "bbea587a402d9974acdd804a33f4b77f31a2fd5f"
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+ "gitHead": "dbe7fb1af01fc89f833d2744635eb44a17365b41"
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  }