@jbrowse/bandage-core 9.9.2 → 9.10.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +3 -0
- package/dist/bubbles/superbubbles.js +2 -2
- package/dist/chunks/{chunk-IZ3W5IU2.js → chunk-2FLBFVMO.js} +33 -33
- package/dist/chunks/{chunk-BQ33OOLC.js → chunk-2VTM3DHG.js} +1 -1
- package/dist/chunks/{chunk-F4BKWWLS.js → chunk-4IYP43W6.js} +4 -4
- package/dist/chunks/{chunk-RK3MF4FD.js → chunk-BDWQQK33.js} +1 -1
- package/dist/chunks/{chunk-HOZI3FBG.js → chunk-CXKZYLYS.js} +1 -1
- package/dist/chunks/{chunk-MECWJY2R.js → chunk-DMH4NL2M.js} +4 -4
- package/dist/chunks/{chunk-P6O4RSOQ.js → chunk-FJZ2TB46.js} +5 -5
- package/dist/chunks/{chunk-IJRNMO4D.js → chunk-FUUJ76KD.js} +1 -1
- package/dist/chunks/{chunk-FPTI3WAV.js → chunk-HRAU4VTB.js} +12 -7
- package/dist/chunks/{chunk-YGN4KL7W.js → chunk-IZI7KIVX.js} +1 -1
- package/dist/chunks/{chunk-YS7VA5SI.js → chunk-K5NYTPLC.js} +1 -1
- package/dist/chunks/{chunk-F5BYHLIN.js → chunk-KYY5363X.js} +1 -1
- package/dist/chunks/{chunk-WVBYR6Y7.js → chunk-LZWSZRUY.js} +1 -1
- package/dist/chunks/{chunk-EE37PVQY.js → chunk-MVMP6AGI.js} +1 -1
- package/dist/chunks/chunk-NGODVSCA.js +292 -0
- package/dist/chunks/chunk-OPPVSPEF.js +57 -0
- package/dist/chunks/{chunk-ZBLKAWSD.js → chunk-PT37VS5B.js} +1 -1
- package/dist/chunks/{chunk-YAN2ZPNV.js → chunk-Q6UIUY6X.js} +1 -1
- package/dist/chunks/{chunk-KJEMKHVB.js → chunk-TFAFIRZB.js} +1 -1
- package/dist/cli/figure.js +41 -40
- package/dist/cli/fold.js +4 -3
- package/dist/figure.js +25 -24
- package/dist/figureData.js +62 -0
- package/dist/figureSettings.js +5 -4
- package/dist/index.js +150 -143
- package/dist/layout/forceCache.js +5 -4
- package/dist/layout/smoothChains.js +6 -0
- package/dist/layout/tubeMapLayout.js +4 -4
- package/dist/layout/walkRowDraw.js +9 -9
- package/dist/layout/walkStrip.js +10 -10
- package/dist/layoutModes.js +7 -7
- package/dist/pathColors.js +3 -3
- package/dist/pipeline.js +4 -3
- package/dist/referenceRampCss.js +7 -7
- package/dist/referenceStrip.js +7 -7
- package/dist/renderer/GeometryBuilder.js +6 -6
- package/dist/tubeMap/bundle.js +5 -5
- package/dist/tubeMap/coarsen.js +4 -4
- package/dist/tubeMap/nodeColors.js +7 -7
- package/dist/types/figureData.d.ts +146 -0
- package/dist/types/index.d.ts +2 -0
- package/dist/types/layout/smoothChains.d.ts +2 -0
- package/dist/types/version.d.ts +1 -1
- package/dist/version.js +1 -1
- package/dist/viewport.js +5 -4
- package/dist/walkEncoding.js +7 -7
- package/dist/walkHighlight.js +8 -8
- package/package.json +1 -1
- package/dist/chunks/{chunk-ROQGMTFB.js → chunk-5GZEPPEW.js} +5 -5
- package/dist/chunks/{chunk-EDASNMLY.js → chunk-XZ2BLAA6.js} +3 -3
package/dist/index.js
CHANGED
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@@ -1,6 +1,13 @@
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import {
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wheelZoomFactor
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} from "./chunks/chunk-TDQLINVI.js";
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import {
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drawTubeMap,
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drawTubeMapHighlight,
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tubeMapMismatchAt,
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tubeMapPicture,
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tubeMapTrackAt
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} from "./chunks/chunk-PIN7ZMTZ.js";
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import {
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tubeMapFrame,
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tubeMapNodeAt
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drawTubeMapGenes,
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tubeMapGenes
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} from "./chunks/chunk-WEDZ76AK.js";
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import "./chunks/chunk-XXT2JCAC.js";
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import {
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tubeMapNodeColors
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} from "./chunks/chunk-
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} from "./chunks/chunk-TFAFIRZB.js";
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import {
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connectorAt,
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drawLitConnector,
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drawTubeMapConnectors,
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tubeMapConnectors
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} from "./chunks/chunk-2ZT7ZF7A.js";
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referenceKnots,
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warpX
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} from "./chunks/chunk-HK5Y2YWV.js";
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import {
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drawTubeMapRuler,
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referenceBoxes,
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tubeX
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} from "./chunks/chunk-BPRXQ2SS.js";
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import {
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tubeMapMismatchAt,
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tubeMapPicture,
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tubeMapTrackAt
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} from "./chunks/chunk-PIN7ZMTZ.js";
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import "./chunks/chunk-XXT2JCAC.js";
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bundleRoutes
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} from "./chunks/chunk-LZWSZRUY.js";
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import {
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connectorAt,
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drawLitConnector,
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drawTubeMapConnectors,
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tubeMapConnectors
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} from "./chunks/chunk-2ZT7ZF7A.js";
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import {
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createForceLayoutCache
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} from "./chunks/chunk-
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} from "./chunks/chunk-Q6UIUY6X.js";
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import {
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graphBubbles,
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superbubblesFromGraph
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} from "./chunks/chunk-
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} from "./chunks/chunk-5GZEPPEW.js";
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import {
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bubblesFromGraph
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} from "./chunks/chunk-CLOP7UVD.js";
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import {
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bubbleSubgraph
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} from "./chunks/chunk-A6PSWTLX.js";
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classifyBubble
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} from "./chunks/chunk-XKWD2RY3.js";
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import {
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bubblesFromGraph
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} from "./chunks/chunk-CLOP7UVD.js";
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import "./chunks/chunk-FX4RDMDN.js";
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import {
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REFERENCE_STRIP_ZONE_PX,
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drawReferenceStrip,
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referenceStripBlocks,
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stripBlockAt
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} from "./chunks/chunk-
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import {
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LAYOUT_ENGINES,
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layoutEngine
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} from "./chunks/chunk-VK6XMP6B.js";
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import {
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stressLayout
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} from "./chunks/chunk-Q6FRNVDU.js";
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import "./chunks/chunk-LYJ4US66.js";
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import {
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FORCE_LAYOUT_LABEL,
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LAYOUT_MODES,
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layoutModeByValue,
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modeUsesLayoutEngine
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} from "./chunks/chunk-IJRNMO4D.js";
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import "./chunks/chunk-LOEA5IHZ.js";
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import "./chunks/chunk-HOZI3FBG.js";
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import "./chunks/chunk-CWFNEKST.js";
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import "./chunks/chunk-L3O7AWLI.js";
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import "./chunks/chunk-TZFWUT2C.js";
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import "./chunks/chunk-C44YRP5F.js";
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import "./chunks/chunk-RVS2QCOX.js";
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import "./chunks/chunk-HNQPEMYE.js";
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} from "./chunks/chunk-BDWQQK33.js";
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import {
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openGbz,
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parseRegion
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} from "./chunks/chunk-73RSLGZT.js";
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import {
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resolveReferenceSample
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} from "./chunks/chunk-LTUWJKHD.js";
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import "./chunks/chunk-WSIFAZU7.js";
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FIGURE_DEFAULTS,
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figureSpecSettings
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} from "./chunks/chunk-IZI7KIVX.js";
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} from "../chunks/chunk-
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CHANGED
|
@@ -9,22 +9,22 @@ import {
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|
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9
|
walkStripApplies,
|
|
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|
walkStripFrame,
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|
walkStripLabelsTree
|
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|
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} from "../chunks/chunk-
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|
+
} from "../chunks/chunk-DMH4NL2M.js";
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import {
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|
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|
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|
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} from "../chunks/chunk-FJZ2TB46.js";
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|
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|
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|
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import "../chunks/chunk-ES2N6V56.js";
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|
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CHANGED
|
@@ -4,23 +4,23 @@ import {
|
|
|
4
4
|
LAYOUT_MODE_VALUES,
|
|
5
5
|
layoutModeByValue,
|
|
6
6
|
modeUsesLayoutEngine
|
|
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|
-
} from "./chunks/chunk-
|
|
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|
+
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|
|
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|
import "./chunks/chunk-LOEA5IHZ.js";
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import "./chunks/chunk-
|
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|
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|
|
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10
|
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|
import "./chunks/chunk-L3O7AWLI.js";
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import "./chunks/chunk-TZFWUT2C.js";
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|
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14
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|
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15
|
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|
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|
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import "./chunks/chunk-HNQPEMYE.js";
|
|
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|
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|
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|
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|
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|
|
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|
-
import "./chunks/chunk-3ZZSX5HN.js";
|
|
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|
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import "./chunks/chunk-AB35TJST.js";
|
|
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|
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import "./chunks/chunk-ES2N6V56.js";
|
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|
+
import "./chunks/chunk-XZ2BLAA6.js";
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19
|
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|
+
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|
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21
|
import "./chunks/chunk-BPLIXMH7.js";
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|
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|
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|
24
24
|
import "./chunks/chunk-TAMCZHLW.js";
|
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25
25
|
import "./chunks/chunk-N6FECAXP.js";
|
|
26
26
|
import "./chunks/chunk-2CVHXFK7.js";
|
package/dist/pathColors.js
CHANGED
|
@@ -9,11 +9,11 @@ import {
|
|
|
9
9
|
pathHueAt,
|
|
10
10
|
pathLegend,
|
|
11
11
|
walkLabelsOf
|
|
12
|
-
} from "./chunks/chunk-
|
|
13
|
-
import "./chunks/chunk-3ZZSX5HN.js";
|
|
14
|
-
import "./chunks/chunk-AB35TJST.js";
|
|
12
|
+
} from "./chunks/chunk-XZ2BLAA6.js";
|
|
15
13
|
import "./chunks/chunk-IGJCTPFB.js";
|
|
16
14
|
import "./chunks/chunk-BPLIXMH7.js";
|
|
15
|
+
import "./chunks/chunk-3ZZSX5HN.js";
|
|
16
|
+
import "./chunks/chunk-AB35TJST.js";
|
|
17
17
|
import "./chunks/chunk-TAMCZHLW.js";
|
|
18
18
|
import "./chunks/chunk-N6FECAXP.js";
|
|
19
19
|
import "./chunks/chunk-2CVHXFK7.js";
|
package/dist/pipeline.js
CHANGED
|
@@ -11,17 +11,18 @@ import {
|
|
|
11
11
|
forceLayout,
|
|
12
12
|
layoutExtent,
|
|
13
13
|
loadGraph
|
|
14
|
-
} from "./chunks/chunk-
|
|
15
|
-
import "./chunks/chunk-PUG7LXDF.js";
|
|
14
|
+
} from "./chunks/chunk-HRAU4VTB.js";
|
|
16
15
|
import "./chunks/chunk-IGVV37VI.js";
|
|
16
|
+
import "./chunks/chunk-OPPVSPEF.js";
|
|
17
|
+
import "./chunks/chunk-PUG7LXDF.js";
|
|
17
18
|
import "./chunks/chunk-J7YKQ5YW.js";
|
|
18
19
|
import "./chunks/chunk-G45YY72K.js";
|
|
19
20
|
import "./chunks/chunk-OA7RIMZ2.js";
|
|
20
21
|
import "./chunks/chunk-QYBZZI5H.js";
|
|
21
22
|
import "./chunks/chunk-CDLPYR5O.js";
|
|
22
23
|
import "./chunks/chunk-JVLURPFW.js";
|
|
23
|
-
import "./chunks/chunk-ES2N6V56.js";
|
|
24
24
|
import "./chunks/chunk-IGJCTPFB.js";
|
|
25
|
+
import "./chunks/chunk-ES2N6V56.js";
|
|
25
26
|
import "./chunks/chunk-BPLIXMH7.js";
|
|
26
27
|
import "./chunks/chunk-TAMCZHLW.js";
|
|
27
28
|
import "./chunks/chunk-UVBGRJQX.js";
|
package/dist/referenceRampCss.js
CHANGED
|
@@ -4,17 +4,17 @@ import {
|
|
|
4
4
|
rampHue,
|
|
5
5
|
rampHueCss,
|
|
6
6
|
rampStops
|
|
7
|
-
} from "./chunks/chunk-
|
|
8
|
-
import "./chunks/chunk-
|
|
7
|
+
} from "./chunks/chunk-K5NYTPLC.js";
|
|
8
|
+
import "./chunks/chunk-4IYP43W6.js";
|
|
9
9
|
import "./chunks/chunk-G2FD7S3C.js";
|
|
10
|
-
import "./chunks/chunk-EDASNMLY.js";
|
|
11
|
-
import "./chunks/chunk-PBENCR5L.js";
|
|
12
10
|
import "./chunks/chunk-WFB5TXRA.js";
|
|
13
|
-
import "./chunks/chunk-
|
|
14
|
-
import "./chunks/chunk-
|
|
15
|
-
import "./chunks/chunk-ES2N6V56.js";
|
|
11
|
+
import "./chunks/chunk-XZ2BLAA6.js";
|
|
12
|
+
import "./chunks/chunk-PBENCR5L.js";
|
|
16
13
|
import "./chunks/chunk-IGJCTPFB.js";
|
|
14
|
+
import "./chunks/chunk-ES2N6V56.js";
|
|
17
15
|
import "./chunks/chunk-BPLIXMH7.js";
|
|
16
|
+
import "./chunks/chunk-3ZZSX5HN.js";
|
|
17
|
+
import "./chunks/chunk-AB35TJST.js";
|
|
18
18
|
import "./chunks/chunk-TAMCZHLW.js";
|
|
19
19
|
import "./chunks/chunk-N6FECAXP.js";
|
|
20
20
|
import "./chunks/chunk-2CVHXFK7.js";
|
package/dist/referenceStrip.js
CHANGED
|
@@ -7,17 +7,17 @@ import {
|
|
|
7
7
|
stripBlockAt,
|
|
8
8
|
stripOverhang,
|
|
9
9
|
stripPixels
|
|
10
|
-
} from "./chunks/chunk-
|
|
11
|
-
import "./chunks/chunk-
|
|
10
|
+
} from "./chunks/chunk-BDWQQK33.js";
|
|
11
|
+
import "./chunks/chunk-4IYP43W6.js";
|
|
12
12
|
import "./chunks/chunk-G2FD7S3C.js";
|
|
13
|
-
import "./chunks/chunk-EDASNMLY.js";
|
|
14
|
-
import "./chunks/chunk-PBENCR5L.js";
|
|
15
13
|
import "./chunks/chunk-WFB5TXRA.js";
|
|
16
|
-
import "./chunks/chunk-
|
|
17
|
-
import "./chunks/chunk-
|
|
18
|
-
import "./chunks/chunk-ES2N6V56.js";
|
|
14
|
+
import "./chunks/chunk-XZ2BLAA6.js";
|
|
15
|
+
import "./chunks/chunk-PBENCR5L.js";
|
|
19
16
|
import "./chunks/chunk-IGJCTPFB.js";
|
|
17
|
+
import "./chunks/chunk-ES2N6V56.js";
|
|
20
18
|
import "./chunks/chunk-BPLIXMH7.js";
|
|
19
|
+
import "./chunks/chunk-3ZZSX5HN.js";
|
|
20
|
+
import "./chunks/chunk-AB35TJST.js";
|
|
21
21
|
import "./chunks/chunk-TAMCZHLW.js";
|
|
22
22
|
import "./chunks/chunk-N6FECAXP.js";
|
|
23
23
|
import "./chunks/chunk-2CVHXFK7.js";
|